[INFO] cloning repository https://github.com/OWissett/PeptideMassScanner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/OWissett/PeptideMassScanner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FOWissett%2FPeptideMassScanner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FOWissett%2FPeptideMassScanner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1c5b93fc3ca5477a738db08c4f70296a63a19c16
[INFO] checking OWissett/PeptideMassScanner against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-139493-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FOWissett%2FPeptideMassScanner" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/OWissett/PeptideMassScanner
[INFO] finished tweaking git repo https://github.com/OWissett/PeptideMassScanner
[INFO] tweaked toml for git repo https://github.com/OWissett/PeptideMassScanner written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/OWissett/PeptideMassScanner on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/OWissett/PeptideMassScanner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded clap_derive v3.1.7
[INFO] [stderr]   Downloaded clap_lex v0.1.1
[INFO] [stderr]   Downloaded proc-macro2 v1.0.37
[INFO] [stderr]   Downloaded syn v1.0.91
[INFO] [stderr]   Downloaded clap v3.1.12
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d8a23a012e458df78405cf5e6d1b833f58ae15be83d602ff60df28b84008371d
[INFO] running `Command { std: "docker" "start" "-a" "d8a23a012e458df78405cf5e6d1b833f58ae15be83d602ff60df28b84008371d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d8a23a012e458df78405cf5e6d1b833f58ae15be83d602ff60df28b84008371d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d8a23a012e458df78405cf5e6d1b833f58ae15be83d602ff60df28b84008371d", kill_on_drop: false }`
[INFO] [stdout] d8a23a012e458df78405cf5e6d1b833f58ae15be83d602ff60df28b84008371d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7138a5e93cf21abd4200e367d935e8c21e61f8bebb5a4cf4cdef4f9f93191f48
[INFO] running `Command { std: "docker" "start" "-a" "7138a5e93cf21abd4200e367d935e8c21e61f8bebb5a4cf4cdef4f9f93191f48", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.37
[INFO] [stderr]    Compiling syn v1.0.91
[INFO] [stderr]    Compiling libc v0.2.124
[INFO] [stderr]     Checking os_str_bytes v6.0.0
[INFO] [stderr]    Compiling indexmap v1.8.1
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking textwrap v0.15.0
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking clap_lex v0.1.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.1.7
[INFO] [stderr]     Checking clap v3.1.12
[INFO] [stderr]     Checking mass_scanner v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unexpected `cfg` condition name: `debug_assertion`
[INFO] [stdout]   --> src/scanner/protein.rs:77:17
[INFO] [stdout]    |
[INFO] [stdout] 77 |         if cfg!(debug_assertion) {
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^ help: there is a config with a similar name: `debug_assertions`
[INFO] [stdout]    |
[INFO] [stdout]    = help: consider using a Cargo feature instead
[INFO] [stdout]    = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[INFO] [stdout]             [lints.rust]
[INFO] [stdout]             unexpected_cfgs = { level = "warn", check-cfg = ['cfg(debug_assertion)'] }
[INFO] [stdout]    = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(debug_assertion)");` to the top of the `build.rs`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `frag_mat`
[INFO] [stdout]   --> src/scanner/mod.rs:63:13
[INFO] [stdout]    |
[INFO] [stdout] 63 |         let frag_mat = self.calculate_frags_and_search();
[INFO] [stdout]    |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_frag_mat`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unexpected `cfg` condition name: `debug_assertion`
[INFO] [stdout]   --> src/scanner/protein.rs:77:17
[INFO] [stdout]    |
[INFO] [stdout] 77 |         if cfg!(debug_assertion) {
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^ help: there is a config with a similar name: `debug_assertions`
[INFO] [stdout]    |
[INFO] [stdout]    = help: consider using a Cargo feature instead
[INFO] [stdout]    = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint:
[INFO] [stdout]             [lints.rust]
[INFO] [stdout]             unexpected_cfgs = { level = "warn", check-cfg = ['cfg(debug_assertion)'] }
[INFO] [stdout]    = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(debug_assertion)");` to the top of the `build.rs`
[INFO] [stdout]    = note: see <https://doc.rust-lang.org/nightly/rustc/check-cfg/cargo-specifics.html> for more information about checking conditional configuration
[INFO] [stdout]    = note: `#[warn(unexpected_cfgs)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `save_frag_mat` is never read
[INFO] [stdout]   --> src/scanner/mod.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | struct Scanner {
[INFO] [stdout]    |        ------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 23 |     save_frag_mat: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `length` is never read
[INFO] [stdout]   --> src/scanner/protein.rs:37:9
[INFO] [stdout]    |
[INFO] [stdout] 35 | pub struct Protein {
[INFO] [stdout]    |            ------- field in this struct
[INFO] [stdout] 36 |     pub primary_seq: String,
[INFO] [stdout] 37 |     pub length: usize,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Protein` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `frag_mat`
[INFO] [stdout]   --> src/scanner/mod.rs:63:13
[INFO] [stdout]    |
[INFO] [stdout] 63 |         let frag_mat = self.calculate_frags_and_search();
[INFO] [stdout]    |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_frag_mat`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `save_frag_mat` is never read
[INFO] [stdout]   --> src/scanner/mod.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | struct Scanner {
[INFO] [stdout]    |        ------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 23 |     save_frag_mat: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `length` is never read
[INFO] [stdout]   --> src/scanner/protein.rs:37:9
[INFO] [stdout]    |
[INFO] [stdout] 35 | pub struct Protein {
[INFO] [stdout]    |            ------- field in this struct
[INFO] [stdout] 36 |     pub primary_seq: String,
[INFO] [stdout] 37 |     pub length: usize,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Protein` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.49s
[INFO] running `Command { std: "docker" "inspect" "7138a5e93cf21abd4200e367d935e8c21e61f8bebb5a4cf4cdef4f9f93191f48", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7138a5e93cf21abd4200e367d935e8c21e61f8bebb5a4cf4cdef4f9f93191f48", kill_on_drop: false }`
[INFO] [stdout] 7138a5e93cf21abd4200e367d935e8c21e61f8bebb5a4cf4cdef4f9f93191f48
