[INFO] cloning repository https://github.com/keithyin/poa
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[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fpoa'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 83d783a833cefc84942de25a4c4f6d7286fbed30
[INFO] checking keithyin/poa against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-139493-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fpoa" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
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[INFO] started tweaking git repo https://github.com/keithyin/poa
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[INFO] validating manifest of git repo https://github.com/keithyin/poa on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/poa already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d4bdae985f28d1063ba47b9d35372028cd5312754210e1d95c0a76920e407171
[INFO] running `Command { std: "docker" "start" "-a" "d4bdae985f28d1063ba47b9d35372028cd5312754210e1d95c0a76920e407171", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d4bdae985f28d1063ba47b9d35372028cd5312754210e1d95c0a76920e407171", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d4bdae985f28d1063ba47b9d35372028cd5312754210e1d95c0a76920e407171", kill_on_drop: false }`
[INFO] [stdout] d4bdae985f28d1063ba47b9d35372028cd5312754210e1d95c0a76920e407171
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 95e5aa429b473aef52255770592e4d374c54c68c7a7f1f1d6312bf5438377cca
[INFO] running `Command { std: "docker" "start" "-a" "95e5aa429b473aef52255770592e4d374c54c68c7a7f1f1d6312bf5438377cca", kill_on_drop: false }`
[INFO] [stderr]     Checking indexmap v2.1.0
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking POA v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `csr::Csr`, `graphmap::GraphMap`, and `matrix_graph::MatrixGraph`
[INFO] [stdout]  --> src/main.rs:1:16
[INFO] [stdout]   |
[INFO] [stdout] 1 | use petgraph::{graphmap::GraphMap, matrix_graph::MatrixGraph, csr::Csr};
[INFO] [stdout]   |                ^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `self`
[INFO] [stdout]  --> src/poa.rs:5:28
[INFO] [stdout]   |
[INFO] [stdout] 5 | use crate::{alignment::{*, self}, dna_utils::reverse_complement};
[INFO] [stdout]   |                            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/poa.rs:233:25
[INFO] [stdout]     |
[INFO] [stdout] 233 |                     let mut target_node = self.graph.node_weight_mut(target[target_cursor]).unwrap();
[INFO] [stdout]     |                         ----^^^^^^^^^^^
[INFO] [stdout]     |                         |
[INFO] [stdout]     |                         help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PartialOrderAlignment` is never constructed
[INFO] [stdout]  --> src/poa.rs:7:12
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub struct PartialOrderAlignment {
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/poa.rs:21:12
[INFO] [stdout]     |
[INFO] [stdout]  19 | impl PartialOrderAlignment {
[INFO] [stdout]     | -------------------------- associated items in this implementation
[INFO] [stdout]  20 |     
[INFO] [stdout]  21 |     pub fn new(align_config: AlignConfig, score_threshold: f32) -> Self{
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout]  34 |     pub fn add_read(&mut self, read: &[u8]) {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout]  43 |     pub fn get_consensus(&self) -> LinkedList<NodeIndex>{
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout]  82 |     fn add_first_read(&mut self, read: &[u8]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 105 |     fn add_more_read(&mut self, read: &[u8]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 124 |     fn alignment(&self, target: &Vec<NodeIndex>, read: &[u8]) -> AlignMatrix{
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 206 |     fn commit_add(&mut self, target: &Vec<NodeIndex>, read: &[u8], align_matrix: &AlignMatrix) {
[INFO] [stdout]     |        ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 280 |     fn spanning_dfs(&self, start: NodeIndex, end: NodeIndex) -> Vec<NodeIndex>{
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 330 |     fn tag_spanning_nodes(&mut self, spanning_nodes: &Vec<NodeIndex>) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PoaNode` is never constructed
[INFO] [stdout]    --> src/poa.rs:340:12
[INFO] [stdout]     |
[INFO] [stdout] 340 | pub struct PoaNode {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]    --> src/poa.rs:351:12
[INFO] [stdout]     |
[INFO] [stdout] 350 | impl PoaNode {
[INFO] [stdout]     | ------------ associated function in this implementation
[INFO] [stdout] 351 |     pub fn new(base: u8, num_reads: u32) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PoaEdge` is never constructed
[INFO] [stdout]    --> src/poa.rs:363:12
[INFO] [stdout]     |
[INFO] [stdout] 363 | pub struct PoaEdge {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]    --> src/poa.rs:368:12
[INFO] [stdout]     |
[INFO] [stdout] 367 | impl PoaEdge {
[INFO] [stdout]     | ------------ associated function in this implementation
[INFO] [stdout] 368 |     pub fn new(weight: u32) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignConfig` is never constructed
[INFO] [stdout]  --> src/alignment.rs:1:12
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub struct AlignConfig {
[INFO] [stdout]   |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new` and `default` are never used
[INFO] [stdout]   --> src/alignment.rs:7:12
[INFO] [stdout]    |
[INFO] [stdout]  6 | impl AlignConfig {
[INFO] [stdout]    | ---------------- associated functions in this implementation
[INFO] [stdout]  7 |     pub fn new(align_mode: AlignMode, align_params: AlignParams) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 11 |     pub fn default() -> Self {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `AlignMode` is never used
[INFO] [stdout]   --> src/alignment.rs:16:10
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub enum AlignMode {
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignParams` is never constructed
[INFO] [stdout]   --> src/alignment.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 23 | pub struct AlignParams {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new` and `default` are never used
[INFO] [stdout]   --> src/alignment.rs:31:12
[INFO] [stdout]    |
[INFO] [stdout] 30 | impl AlignParams {
[INFO] [stdout]    | ---------------- associated functions in this implementation
[INFO] [stdout] 31 |     pub fn new(match_score: i32, mismatch_score: i32, insertion_score: i32, deletion_score: i32) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 35 |     pub fn default() -> Self {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `TransMode` is never used
[INFO] [stdout]   --> src/alignment.rs:41:10
[INFO] [stdout]    |
[INFO] [stdout] 41 | pub enum TransMode {
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignPosition` is never constructed
[INFO] [stdout]   --> src/alignment.rs:50:12
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub struct AlignPosition {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new` and `default` are never used
[INFO] [stdout]   --> src/alignment.rs:57:12
[INFO] [stdout]    |
[INFO] [stdout] 56 | impl AlignPosition {
[INFO] [stdout]    | ------------------ associated functions in this implementation
[INFO] [stdout] 57 |     pub fn new(score: i32, pre_trans_mode: TransMode, pre_colunm: i32) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 65 |     pub fn default() -> Self {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignMatrix` is never constructed
[INFO] [stdout]   --> src/alignment.rs:70:12
[INFO] [stdout]    |
[INFO] [stdout] 70 | pub struct AlignMatrix {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new`, `set`, `get`, `get_max_score`, and `get_max_score_positions` are never used
[INFO] [stdout]    --> src/alignment.rs:78:12
[INFO] [stdout]     |
[INFO] [stdout]  76 | impl AlignMatrix {
[INFO] [stdout]     | ---------------- associated items in this implementation
[INFO] [stdout]  77 |     
[INFO] [stdout]  78 |     pub fn new(num_rows: usize, num_cols: usize) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout]  86 |     pub fn set(&mut self, row: usize, col: usize, align_pos: AlignPosition) {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout]  99 |     pub fn get(&self, row: usize, col: usize) -> Option<AlignPosition> {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 103 |     pub fn get_max_score(&self) -> i32 {
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 107 |     pub fn get_max_score_positions(&self) -> &Vec<(usize, usize)> {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `align` is never used
[INFO] [stdout]    --> src/alignment.rs:131:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub fn align(s1: &[u8], s2: &[u8], align_cfg: &AlignConfig) -> AlignMatrix{
[INFO] [stdout]     |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]   --> src/dna_utils.rs:18:8
[INFO] [stdout]    |
[INFO] [stdout] 18 | pub fn reverse_complement(read: &[u8]) -> Vec<u8> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `csr::Csr`, `graphmap::GraphMap`, and `matrix_graph::MatrixGraph`
[INFO] [stdout]  --> src/main.rs:1:16
[INFO] [stdout]   |
[INFO] [stdout] 1 | use petgraph::{graphmap::GraphMap, matrix_graph::MatrixGraph, csr::Csr};
[INFO] [stdout]   |                ^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `self`
[INFO] [stdout]  --> src/poa.rs:5:28
[INFO] [stdout]   |
[INFO] [stdout] 5 | use crate::{alignment::{*, self}, dna_utils::reverse_complement};
[INFO] [stdout]   |                            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/poa.rs:233:25
[INFO] [stdout]     |
[INFO] [stdout] 233 |                     let mut target_node = self.graph.node_weight_mut(target[target_cursor]).unwrap();
[INFO] [stdout]     |                         ----^^^^^^^^^^^
[INFO] [stdout]     |                         |
[INFO] [stdout]     |                         help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PartialOrderAlignment` is never constructed
[INFO] [stdout]  --> src/poa.rs:7:12
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub struct PartialOrderAlignment {
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/poa.rs:21:12
[INFO] [stdout]     |
[INFO] [stdout]  19 | impl PartialOrderAlignment {
[INFO] [stdout]     | -------------------------- associated items in this implementation
[INFO] [stdout]  20 |     
[INFO] [stdout]  21 |     pub fn new(align_config: AlignConfig, score_threshold: f32) -> Self{
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout]  34 |     pub fn add_read(&mut self, read: &[u8]) {
[INFO] [stdout]     |            ^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout]  43 |     pub fn get_consensus(&self) -> LinkedList<NodeIndex>{
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout]  82 |     fn add_first_read(&mut self, read: &[u8]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 105 |     fn add_more_read(&mut self, read: &[u8]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 124 |     fn alignment(&self, target: &Vec<NodeIndex>, read: &[u8]) -> AlignMatrix{
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 206 |     fn commit_add(&mut self, target: &Vec<NodeIndex>, read: &[u8], align_matrix: &AlignMatrix) {
[INFO] [stdout]     |        ^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 280 |     fn spanning_dfs(&self, start: NodeIndex, end: NodeIndex) -> Vec<NodeIndex>{
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 330 |     fn tag_spanning_nodes(&mut self, spanning_nodes: &Vec<NodeIndex>) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PoaNode` is never constructed
[INFO] [stdout]    --> src/poa.rs:340:12
[INFO] [stdout]     |
[INFO] [stdout] 340 | pub struct PoaNode {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]    --> src/poa.rs:351:12
[INFO] [stdout]     |
[INFO] [stdout] 350 | impl PoaNode {
[INFO] [stdout]     | ------------ associated function in this implementation
[INFO] [stdout] 351 |     pub fn new(base: u8, num_reads: u32) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `PoaEdge` is never constructed
[INFO] [stdout]    --> src/poa.rs:363:12
[INFO] [stdout]     |
[INFO] [stdout] 363 | pub struct PoaEdge {
[INFO] [stdout]     |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new` is never used
[INFO] [stdout]    --> src/poa.rs:368:12
[INFO] [stdout]     |
[INFO] [stdout] 367 | impl PoaEdge {
[INFO] [stdout]     | ------------ associated function in this implementation
[INFO] [stdout] 368 |     pub fn new(weight: u32) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignConfig` is never constructed
[INFO] [stdout]  --> src/alignment.rs:1:12
[INFO] [stdout]   |
[INFO] [stdout] 1 | pub struct AlignConfig {
[INFO] [stdout]   |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new` and `default` are never used
[INFO] [stdout]   --> src/alignment.rs:7:12
[INFO] [stdout]    |
[INFO] [stdout]  6 | impl AlignConfig {
[INFO] [stdout]    | ---------------- associated functions in this implementation
[INFO] [stdout]  7 |     pub fn new(align_mode: AlignMode, align_params: AlignParams) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 11 |     pub fn default() -> Self {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `AlignMode` is never used
[INFO] [stdout]   --> src/alignment.rs:16:10
[INFO] [stdout]    |
[INFO] [stdout] 16 | pub enum AlignMode {
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignParams` is never constructed
[INFO] [stdout]   --> src/alignment.rs:23:12
[INFO] [stdout]    |
[INFO] [stdout] 23 | pub struct AlignParams {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new` and `default` are never used
[INFO] [stdout]   --> src/alignment.rs:31:12
[INFO] [stdout]    |
[INFO] [stdout] 30 | impl AlignParams {
[INFO] [stdout]    | ---------------- associated functions in this implementation
[INFO] [stdout] 31 |     pub fn new(match_score: i32, mismatch_score: i32, insertion_score: i32, deletion_score: i32) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 35 |     pub fn default() -> Self {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `TransMode` is never used
[INFO] [stdout]   --> src/alignment.rs:41:10
[INFO] [stdout]    |
[INFO] [stdout] 41 | pub enum TransMode {
[INFO] [stdout]    |          ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignPosition` is never constructed
[INFO] [stdout]   --> src/alignment.rs:50:12
[INFO] [stdout]    |
[INFO] [stdout] 50 | pub struct AlignPosition {
[INFO] [stdout]    |            ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated functions `new` and `default` are never used
[INFO] [stdout]   --> src/alignment.rs:57:12
[INFO] [stdout]    |
[INFO] [stdout] 56 | impl AlignPosition {
[INFO] [stdout]    | ------------------ associated functions in this implementation
[INFO] [stdout] 57 |     pub fn new(score: i32, pre_trans_mode: TransMode, pre_colunm: i32) -> Self {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 65 |     pub fn default() -> Self {
[INFO] [stdout]    |            ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `AlignMatrix` is never constructed
[INFO] [stdout]   --> src/alignment.rs:70:12
[INFO] [stdout]    |
[INFO] [stdout] 70 | pub struct AlignMatrix {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `new`, `set`, `get`, `get_max_score`, and `get_max_score_positions` are never used
[INFO] [stdout]    --> src/alignment.rs:78:12
[INFO] [stdout]     |
[INFO] [stdout]  76 | impl AlignMatrix {
[INFO] [stdout]     | ---------------- associated items in this implementation
[INFO] [stdout]  77 |     
[INFO] [stdout]  78 |     pub fn new(num_rows: usize, num_cols: usize) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout]  86 |     pub fn set(&mut self, row: usize, col: usize, align_pos: AlignPosition) {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout]  99 |     pub fn get(&self, row: usize, col: usize) -> Option<AlignPosition> {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 103 |     pub fn get_max_score(&self) -> i32 {
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 107 |     pub fn get_max_score_positions(&self) -> &Vec<(usize, usize)> {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `align` is never used
[INFO] [stdout]    --> src/alignment.rs:131:8
[INFO] [stdout]     |
[INFO] [stdout] 131 | pub fn align(s1: &[u8], s2: &[u8], align_cfg: &AlignConfig) -> AlignMatrix{
[INFO] [stdout]     |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `reverse_complement` is never used
[INFO] [stdout]   --> src/dna_utils.rs:18:8
[INFO] [stdout]    |
[INFO] [stdout] 18 | pub fn reverse_complement(read: &[u8]) -> Vec<u8> {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.32s
[INFO] running `Command { std: "docker" "inspect" "95e5aa429b473aef52255770592e4d374c54c68c7a7f1f1d6312bf5438377cca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "95e5aa429b473aef52255770592e4d374c54c68c7a7f1f1d6312bf5438377cca", kill_on_drop: false }`
[INFO] [stdout] 95e5aa429b473aef52255770592e4d374c54c68c7a7f1f1d6312bf5438377cca
