[INFO] cloning repository https://github.com/amsesk/protein2contig
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/amsesk/protein2contig" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d2c1b32d69b4e995f0f4fa3bfc6735cd60222d8d
[INFO] checking amsesk/protein2contig against master#bca37a20bd376ce3fd138e7cdee7fe704e0f8814 for pr-139493-3
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Famsesk%2Fprotein2contig" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/amsesk/protein2contig
[INFO] finished tweaking git repo https://github.com/amsesk/protein2contig
[INFO] tweaked toml for git repo https://github.com/amsesk/protein2contig written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/amsesk/protein2contig on toolchain bca37a20bd376ce3fd138e7cdee7fe704e0f8814
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/amsesk/protein2contig already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-bio`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded version_check v0.9.1
[INFO] [stderr]   Downloaded bytecount v0.6.0
[INFO] [stderr]   Downloaded snafu-derive v0.6.8
[INFO] [stderr]   Downloaded snafu v0.6.8
[INFO] [stderr]   Downloaded derive-new v0.5.8
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded indexmap v1.3.2
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded bit-vec v0.6.2
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded ordermap v0.3.5
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded serde_derive v1.0.110
[INFO] [stderr]   Downloaded serde v1.0.110
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded aho-corasick v0.7.10
[INFO] [stderr]   Downloaded syn v1.0.20
[INFO] [stderr]   Downloaded ndarray v0.13.1
[INFO] [stderr]   Downloaded regex v1.3.7
[INFO] [stderr]   Downloaded regex-syntax v0.6.17
[INFO] [stderr]   Downloaded libc v0.2.70
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6cd670abb0164b0336ff37232efca225b2aa95b0861e69371de44237c3d1b5da
[INFO] running `Command { std: "docker" "start" "-a" "6cd670abb0164b0336ff37232efca225b2aa95b0861e69371de44237c3d1b5da", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6cd670abb0164b0336ff37232efca225b2aa95b0861e69371de44237c3d1b5da", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6cd670abb0164b0336ff37232efca225b2aa95b0861e69371de44237c3d1b5da", kill_on_drop: false }`
[INFO] [stdout] 6cd670abb0164b0336ff37232efca225b2aa95b0861e69371de44237c3d1b5da
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:aa71247004a7fa38d13ec170f48f06cdedf5bc50b2a8645e56ed7e992e6fa513" "/opt/rustwide/cargo-home/bin/cargo" "+bca37a20bd376ce3fd138e7cdee7fe704e0f8814" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 130f7103da3dc2bcdb538c4903d32efab1678c7f5390f7bf4fc59fbd6a8dab07
[INFO] running `Command { std: "docker" "start" "-a" "130f7103da3dc2bcdb538c4903d32efab1678c7f5390f7bf4fc59fbd6a8dab07", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.12
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.20
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling libc v0.2.70
[INFO] [stderr]    Compiling serde v1.0.110
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ryu v1.0.4
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking ppv-lite86 v0.2.6
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking regex-syntax v0.6.17
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]     Checking itoa v0.4.5
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking aho-corasick v0.7.10
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling bio v0.30.1-alpha.0 (https://github.com/rust-bio/rust-bio#0fe46244)
[INFO] [stderr]    Compiling proc-macro-error-attr v0.4.12
[INFO] [stderr]    Compiling proc-macro-error v0.4.12
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking bit-vec v0.6.2
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling indexmap v1.3.2
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]    Compiling quote v1.0.4
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking termcolor v1.1.0
[INFO] [stderr]     Checking os_str_bytes v2.3.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking regex v1.3.7
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.110
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.1
[INFO] [stderr]     Checking snafu v0.6.8
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking bio-types v0.6.0
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking multimap v0.6.0
[INFO] [stderr]     Checking clap v3.0.0-beta.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking protein2contig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: found module declaration for lib.rs
[INFO] [stdout]  --> src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | mod lib;
[INFO] [stdout]   | ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: lib.rs is the root of this crate's library target
[INFO] [stdout]   = help: to refer to it from other targets, use the library's name as the path
[INFO] [stdout]   = note: `#[warn(special_module_name)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: found module declaration for lib.rs
[INFO] [stdout]  --> src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | mod lib;
[INFO] [stdout]   | ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: lib.rs is the root of this crate's library target
[INFO] [stdout]   = help: to refer to it from other targets, use the library's name as the path
[INFO] [stdout]   = note: `#[warn(special_module_name)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.31s
[INFO] running `Command { std: "docker" "inspect" "130f7103da3dc2bcdb538c4903d32efab1678c7f5390f7bf4fc59fbd6a8dab07", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "130f7103da3dc2bcdb538c4903d32efab1678c7f5390f7bf4fc59fbd6a8dab07", kill_on_drop: false }`
[INFO] [stdout] 130f7103da3dc2bcdb538c4903d32efab1678c7f5390f7bf4fc59fbd6a8dab07
