[INFO] fetching crate gsetl 0.9.0...
[INFO] checking gsetl-0.9.0 against try#863511eff87e66198b396935f3b5c8a543022f53 for pr-139493-1
[INFO] extracting crate gsetl 0.9.0 into /workspace/builds/worker-2-tc2/source
[INFO] started tweaking crates.io crate gsetl 0.9.0
[INFO] finished tweaking crates.io crate gsetl 0.9.0
[INFO] tweaked toml for crates.io crate gsetl 0.9.0 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate gsetl 0.9.0 on toolchain 863511eff87e66198b396935f3b5c8a543022f53
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+863511eff87e66198b396935f3b5c8a543022f53" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate gsetl 0.9.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+863511eff87e66198b396935f3b5c8a543022f53" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] warning: unused import: `fmt::Display`
[INFO] [stdout]  --> src/non_aligned_bam_etl/mod.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 |     fmt::Display,
[INFO] [stdout]   |     ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `fmt::Display`
[INFO] [stdout]  --> src/non_aligned_bam_etl/mod.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 |     fmt::Display,
[INFO] [stdout]   |     ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `record_ext`
[INFO] [stdout]    --> src/non_aligned_bam_etl/fact_bam_basic.rs:142:17
[INFO] [stdout]     |
[INFO] [stdout] 142 |             let record_ext = BamRecordExt::new(&record);
[INFO] [stdout]     |                 ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_record_ext`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic2` is never used
[INFO] [stdout]   --> src/non_aligned_bam_etl/mod.rs:31:8
[INFO] [stdout]    |
[INFO] [stdout] 31 | pub fn fact_bam_basic2(bam_file: &str) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:101:4
[INFO] [stdout]     |
[INFO] [stdout] 101 | fn base_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_base_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:111:4
[INFO] [stdout]     |
[INFO] [stdout] 111 | fn base_level_base_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:120:4
[INFO] [stdout]     |
[INFO] [stdout] 120 | fn channel_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `speed` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:129:4
[INFO] [stdout]     |
[INFO] [stdout] 129 | fn speed(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:143:5
[INFO] [stdout]     |
[INFO] [stdout] 142 | struct Stat {
[INFO] [stdout]     |        ---- fields in this struct
[INFO] [stdout] 143 |     rng: StdRng,
[INFO] [stdout]     |     ^^^
[INFO] [stdout] 144 |     channel_sample_rate: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 154 |     cq_mean: f64,
[INFO] [stdout]     |     ^^^^^^^
[INFO] [stdout] 155 |     all_oe: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^
[INFO] [stdout] 156 |     oe_median: f64,
[INFO] [stdout]     |     ^^^^^^^^^
[INFO] [stdout] 157 |     
[INFO] [stdout] 158 |     all_read_length: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 159 |     read_length_median: f64,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 160 |
[INFO] [stdout] 161 |     speed: f64,
[INFO] [stdout]     |     ^^^^^
[INFO] [stdout] 162 |
[INFO] [stdout] 163 |     sampled_channel_dw: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 164 |     sampled_channel_ar: Vec<f64>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 165 |
[INFO] [stdout] 166 |     sampled_channel_read_length: Vec<usize>,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 172 |     channel_cnt: usize,
[INFO] [stdout]     |     ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `Stat` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `update`, `update_channel_info`, `finish`, `csv`, and `to_histgram_data` are never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:203:12
[INFO] [stdout]     |
[INFO] [stdout] 175 | impl Stat {
[INFO] [stdout]     | --------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 203 |     pub fn update(&mut self, rec: &Record) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 285 |     fn update_channel_info(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 307 |     pub fn finish(&mut self) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 322 |     pub fn csv(&self) -> String {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 356 |     pub fn to_histgram_data(&self) -> String {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic_v0` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:389:8
[INFO] [stdout]     |
[INFO] [stdout] 389 | pub fn fact_bam_basic_v0(param: &NonAlignedBamParams, output_dir: &str) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_records_num` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:440:4
[INFO] [stdout]     |
[INFO] [stdout] 440 | fn get_records_num(bam_file: &str, bam_threads: usize) -> usize {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `partition` is never used
[INFO] [stdout]  --> src/utils.rs:5:4
[INFO] [stdout]   |
[INFO] [stdout] 5 | fn partition<T: PartialOrd + Copy>(data: &mut [T], pivot_index: usize) -> usize {
[INFO] [stdout]   |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `select_nth` is never used
[INFO] [stdout]   --> src/utils.rs:21:4
[INFO] [stdout]    |
[INFO] [stdout] 21 | fn select_nth<T: PartialOrd + Copy>(data: &mut [T], n: usize) -> T {
[INFO] [stdout]    |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `median` is never used
[INFO] [stdout]   --> src/utils.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn median<T: PartialOrd + Copy + Add<Output = T> + Into<f64>>(data: &mut [T]) -> Option<f64> {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic2` is never used
[INFO] [stdout]   --> src/non_aligned_bam_etl/mod.rs:31:8
[INFO] [stdout]    |
[INFO] [stdout] 31 | pub fn fact_bam_basic2(bam_file: &str) {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:101:4
[INFO] [stdout]     |
[INFO] [stdout] 101 | fn base_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `base_level_base_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:111:4
[INFO] [stdout]     |
[INFO] [stdout] 111 | fn base_level_base_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `channel_level_overall_aggr` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:120:4
[INFO] [stdout]     |
[INFO] [stdout] 120 | fn channel_level_overall_aggr(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `speed` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:129:4
[INFO] [stdout]     |
[INFO] [stdout] 129 | fn speed(mut df: LazyFrame) {
[INFO] [stdout]     |    ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: struct `Stat` is never constructed
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:142:8
[INFO] [stdout]     |
[INFO] [stdout] 142 | struct Stat {
[INFO] [stdout]     |        ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple associated items are never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:176:12
[INFO] [stdout]     |
[INFO] [stdout] 175 | impl Stat {
[INFO] [stdout]     | --------- associated items in this implementation
[INFO] [stdout] 176 |     pub fn new(rng: StdRng, channel_sample_rate: f64) -> Self {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 203 |     pub fn update(&mut self, rec: &Record) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 241 |     fn update_base_level_info(&mut self, bases: &[u8], dws: &[f64], ars: &[f64], crs: &[f64]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 285 |     fn update_channel_info(
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 307 |     pub fn finish(&mut self) {
[INFO] [stdout]     |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 322 |     pub fn csv(&self) -> String {
[INFO] [stdout]     |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 356 |     pub fn to_histgram_data(&self) -> String {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `fact_bam_basic_v0` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:389:8
[INFO] [stdout]     |
[INFO] [stdout] 389 | pub fn fact_bam_basic_v0(param: &NonAlignedBamParams, output_dir: &str) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_records_num` is never used
[INFO] [stdout]    --> src/non_aligned_bam_etl/mod.rs:440:4
[INFO] [stdout]     |
[INFO] [stdout] 440 | fn get_records_num(bam_file: &str, bam_threads: usize) -> usize {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `partition` is never used
[INFO] [stdout]  --> src/utils.rs:5:4
[INFO] [stdout]   |
[INFO] [stdout] 5 | fn partition<T: PartialOrd + Copy>(data: &mut [T], pivot_index: usize) -> usize {
[INFO] [stdout]   |    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `select_nth` is never used
[INFO] [stdout]   --> src/utils.rs:21:4
[INFO] [stdout]    |
[INFO] [stdout] 21 | fn select_nth<T: PartialOrd + Copy>(data: &mut [T], n: usize) -> T {
[INFO] [stdout]    |    ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `median` is never used
[INFO] [stdout]   --> src/utils.rs:44:8
[INFO] [stdout]    |
[INFO] [stdout] 44 | pub fn median<T: PartialOrd + Copy + Add<Output = T> + Into<f64>>(data: &mut [T]) -> Option<f64> {
[INFO] [stdout]    |        ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 21s
[INFO] running `Command { std: "docker" "inspect" "afbf6513654e5e1c38a13f95262b2d58ff58046d2466ff0080a60ef04034592e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "afbf6513654e5e1c38a13f95262b2d58ff58046d2466ff0080a60ef04034592e", kill_on_drop: false }`
[INFO] [stdout] afbf6513654e5e1c38a13f95262b2d58ff58046d2466ff0080a60ef04034592e
