[INFO] cloning repository https://github.com/koisland/rs-gavisunk [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/koisland/rs-gavisunk" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-gavisunk", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-gavisunk'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fa98778c07b76b4a4d0015f568b4ccb4ecb50b5c [INFO] checking koisland/rs-gavisunk against master#19f42cb9bb65555e7d95dab7d17573ae6c5d634c for pr-139087 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-gavisunk" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/koisland/rs-gavisunk on toolchain 19f42cb9bb65555e7d95dab7d17573ae6c5d634c [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+19f42cb9bb65555e7d95dab7d17573ae6c5d634c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/koisland/rs-gavisunk [INFO] finished tweaking git repo https://github.com/koisland/rs-gavisunk [INFO] tweaked toml for git repo https://github.com/koisland/rs-gavisunk written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/koisland/rs-gavisunk already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+19f42cb9bb65555e7d95dab7d17573ae6c5d634c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded polars-schema v0.45.1 [INFO] [stderr] Downloaded polars-time v0.45.1 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded polars-error v0.45.1 [INFO] [stderr] Downloaded distmat v0.3.0 [INFO] [stderr] Downloaded noodles v0.85.0 [INFO] [stderr] Downloaded noodles-fasta v0.45.0 [INFO] [stderr] Downloaded polars-utils v0.45.1 [INFO] [stderr] Downloaded noodles-bgzf v0.33.0 [INFO] [stderr] Downloaded coitrees v0.4.0 [INFO] [stderr] Downloaded polars-row v0.45.1 [INFO] [stderr] Downloaded polars-compute v0.45.1 [INFO] [stderr] Downloaded polars-expr v0.45.1 [INFO] [stderr] Downloaded polars-sql v0.45.1 [INFO] [stderr] Downloaded polars-mem-engine v0.45.1 [INFO] [stderr] Downloaded comfy-table v7.1.3 [INFO] [stderr] Downloaded polars-pipe v0.45.1 [INFO] [stderr] Downloaded polars-stream v0.45.1 [INFO] [stderr] Downloaded polars-lazy v0.45.1 [INFO] [stderr] Downloaded polars v0.45.1 [INFO] [stderr] Downloaded polars-ops v0.45.1 [INFO] [stderr] Downloaded polars-io v0.45.1 [INFO] [stderr] Downloaded polars-parquet v0.45.1 [INFO] [stderr] Downloaded sqlparser v0.52.0 [INFO] [stderr] Downloaded polars-plan v0.45.1 [INFO] [stderr] Downloaded polars-arrow v0.45.1 [INFO] [stderr] Downloaded kmers v0.2.2 [INFO] [stderr] Downloaded chrono-tz v0.10.0 [INFO] [stderr] Downloaded polars-core v0.45.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+19f42cb9bb65555e7d95dab7d17573ae6c5d634c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4c212889fd9cf039cd9b6a223ba2726d4317f5462b1c5e693e328d52ba042b1c [INFO] running `Command { std: "docker" "start" "-a" "4c212889fd9cf039cd9b6a223ba2726d4317f5462b1c5e693e328d52ba042b1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4c212889fd9cf039cd9b6a223ba2726d4317f5462b1c5e693e328d52ba042b1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4c212889fd9cf039cd9b6a223ba2726d4317f5462b1c5e693e328d52ba042b1c", kill_on_drop: false }` [INFO] [stdout] 4c212889fd9cf039cd9b6a223ba2726d4317f5462b1c5e693e328d52ba042b1c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+19f42cb9bb65555e7d95dab7d17573ae6c5d634c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f52b6e68bcdf9cee603f7b226e9eea8e14fe3403977c0b7fd1e68e622644ab4f [INFO] running `Command { std: "docker" "start" "-a" "f52b6e68bcdf9cee603f7b226e9eea8e14fe3403977c0b7fd1e68e622644ab4f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.168 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling serde v1.0.216 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling rustversion v1.0.18 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling siphasher v0.3.11 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Checking bitflags v2.6.0 [INFO] [stderr] Compiling cc v1.2.4 [INFO] [stderr] Compiling phf_shared v0.11.2 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Checking bytes v1.9.0 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling target-features v0.1.6 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling thiserror v2.0.7 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking array-init-cursor v0.2.0 [INFO] [stderr] Checking once_cell v1.20.2 [INFO] [stderr] Checking foldhash v0.1.3 [INFO] [stderr] Compiling phf_generator v0.11.2 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Checking itoa v1.0.14 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling phf_codegen v0.11.2 [INFO] [stderr] Checking planus v0.3.1 [INFO] [stderr] Compiling syn v2.0.90 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking smallvec v1.13.2 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking castaway v0.2.3 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Compiling polars-utils v0.45.1 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Checking iana-time-zone v0.1.61 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Checking memmap2 v0.9.5 [INFO] [stderr] Checking raw-cpuid v11.2.0 [INFO] [stderr] Compiling polars-schema v0.45.1 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Compiling polars-arrow v0.45.1 [INFO] [stderr] Compiling polars-compute v0.45.1 [INFO] [stderr] Checking phf v0.11.2 [INFO] [stderr] Checking strength_reduce v0.2.4 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking ethnum v1.5.0 [INFO] [stderr] Checking dyn-clone v1.0.17 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Compiling rustix v0.38.42 [INFO] [stderr] Checking atoi_simd v0.16.0 [INFO] [stderr] Checking itoap v1.0.1 [INFO] [stderr] Checking fast-float2 v0.2.3 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Compiling polars-core v0.45.1 [INFO] [stderr] Checking unicode-width v0.2.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Compiling polars-ops v0.45.1 [INFO] [stderr] Checking xxhash-rust v0.8.12 [INFO] [stderr] Compiling polars-plan v0.45.1 [INFO] [stderr] Checking home v0.5.9 [INFO] [stderr] Checking adler2 v2.0.0 [INFO] [stderr] Checking glob v0.3.1 [INFO] [stderr] Checking percent-encoding v2.3.1 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Checking chrono v0.4.39 [INFO] [stderr] Checking argminmax v0.6.2 [INFO] [stderr] Compiling psm v0.1.24 [INFO] [stderr] Compiling stacker v0.1.17 [INFO] [stderr] Checking atoi v2.0.0 [INFO] [stderr] Checking miniz_oxide v0.8.0 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Checking bstr v1.11.1 [INFO] [stderr] Checking crossbeam-channel v0.5.14 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Compiling polars-lazy v0.45.1 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling time-core v0.1.2 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling num-conv v0.1.0 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Checking powerfmt v0.2.0 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking deranged v0.3.11 [INFO] [stderr] Checking streaming-decompression v0.1.2 [INFO] [stderr] Compiling chrono-tz-build v0.4.0 [INFO] [stderr] Checking noodles-core v0.15.0 [INFO] [stderr] Checking flate2 v1.0.35 [INFO] [stderr] Compiling time-macros v0.2.19 [INFO] [stderr] Compiling polars v0.45.1 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Checking now v0.1.3 [INFO] [stderr] Compiling eyre v0.6.12 [INFO] [stderr] Checking polars-parquet-format v0.1.0 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking clap_builder v4.5.23 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking colored v2.2.0 [INFO] [stderr] Compiling chrono-tz v0.10.0 [INFO] [stderr] Checking log v0.4.22 [INFO] [stderr] Checking indenter v0.3.3 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking noodles-bgzf v0.33.0 [INFO] [stderr] Checking coitrees v0.4.0 [INFO] [stderr] Checking crossterm v0.28.1 [INFO] [stderr] Checking kmers v0.2.2 [INFO] [stderr] Checking noodles-fasta v0.45.0 [INFO] [stderr] Checking noodles v0.85.0 [INFO] [stderr] Checking time v0.3.37 [INFO] [stderr] Compiling serde_derive v1.0.216 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling thiserror-impl v2.0.7 [INFO] [stderr] Compiling bytemuck_derive v1.8.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling recursive-proc-macro-impl v0.1.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Checking simple_logger v5.0.0 [INFO] [stderr] Checking recursive v0.1.1 [INFO] [stderr] Checking bytemuck v1.20.0 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking distmat v0.3.0 [INFO] [stderr] Compiling multiversion-macros v0.7.4 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking comfy-table v7.1.3 [INFO] [stderr] Checking clap v4.5.23 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking multiversion v0.7.4 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking hashbrown v0.15.2 [INFO] [stderr] Checking polars-arrow-format v0.1.0 [INFO] [stderr] Checking compact_str v0.8.0 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking indexmap v2.7.0 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking polars-error v0.45.1 [INFO] [stderr] Checking polars-row v0.45.1 [INFO] [stderr] Checking polars-parquet v0.45.1 [INFO] [stderr] Checking polars-time v0.45.1 [INFO] [stderr] Checking polars-io v0.45.1 [INFO] [stderr] Checking polars-expr v0.45.1 [INFO] [stderr] Checking polars-mem-engine v0.45.1 [INFO] [stderr] Checking rs-gavisunk v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: type alias `RegionIntervals` is never used [INFO] [stdout] --> src/io.rs:18:10 [INFO] [stdout] | [INFO] [stdout] 18 | pub type RegionIntervals = HashMap>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `RegionIntervalTrees` is never used [INFO] [stdout] --> src/io.rs:19:10 [INFO] [stdout] | [INFO] [stdout] 19 | pub type RegionIntervalTrees = HashMap>; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_bed` is never used [INFO] [stdout] --> src/io.rs:42:8 [INFO] [stdout] | [INFO] [stdout] 42 | pub fn read_bed( [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `test_run` is never used [INFO] [stdout] --> src/sunk_graph.rs:374:8 [INFO] [stdout] | [INFO] [stdout] 374 | fn test_run() { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `RegionIntervals` is never used [INFO] [stdout] --> src/io.rs:18:10 [INFO] [stdout] | [INFO] [stdout] 18 | pub type RegionIntervals = HashMap>>; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: type alias `RegionIntervalTrees` is never used [INFO] [stdout] --> src/io.rs:19:10 [INFO] [stdout] | [INFO] [stdout] 19 | pub type RegionIntervalTrees = HashMap>; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `read_bed` is never used [INFO] [stdout] --> src/io.rs:42:8 [INFO] [stdout] | [INFO] [stdout] 42 | pub fn read_bed( [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 15s [INFO] running `Command { std: "docker" "inspect" "f52b6e68bcdf9cee603f7b226e9eea8e14fe3403977c0b7fd1e68e622644ab4f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f52b6e68bcdf9cee603f7b226e9eea8e14fe3403977c0b7fd1e68e622644ab4f", kill_on_drop: false }` [INFO] [stdout] f52b6e68bcdf9cee603f7b226e9eea8e14fe3403977c0b7fd1e68e622644ab4f