[INFO] fetching crate gtars-genomicdist 0.5.3... [INFO] checking gtars-genomicdist-0.5.3 against master#91775dbec9771aa0c1b9ebe268eb5bd271e79a7a for pr-139087-1 [INFO] extracting crate gtars-genomicdist 0.5.3 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate gtars-genomicdist 0.5.3 [INFO] finished tweaking crates.io crate gtars-genomicdist 0.5.3 [INFO] tweaked toml for crates.io crate gtars-genomicdist 0.5.3 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate gtars-genomicdist 0.5.3 on toolchain 91775dbec9771aa0c1b9ebe268eb5bd271e79a7a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91775dbec9771aa0c1b9ebe268eb5bd271e79a7a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate gtars-genomicdist 0.5.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+91775dbec9771aa0c1b9ebe268eb5bd271e79a7a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded stacker v0.1.22 [INFO] [stderr] Downloaded phf v0.12.1 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded uuid v1.20.0 [INFO] [stderr] Downloaded portable-atomic-util v0.2.5 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded unicode-xid v0.1.0 [INFO] [stderr] Downloaded proc-macro2 v0.4.30 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded gtars-overlaprs v0.5.1 [INFO] [stderr] Downloaded zerocopy-derive v0.8.38 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded polars-io v0.51.0 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded polars-ops v0.51.0 [INFO] [stderr] Downloaded polars-arrow v0.51.0 [INFO] [stderr] Downloaded syn v0.15.44 [INFO] [stderr] Downloaded sqlparser v0.53.0 [INFO] [stderr] Downloaded polars-stream v0.51.0 [INFO] [stderr] Downloaded ndarray v0.16.1 [INFO] [stderr] Downloaded nalgebra v0.33.2 [INFO] [stderr] Downloaded polars-plan v0.51.0 [INFO] [stderr] Downloaded polars-core v0.51.0 [INFO] [stderr] Downloaded lz4-sys v1.11.1+lz4-1.10.0 [INFO] [stderr] Downloaded object_store v0.12.5 [INFO] [stderr] Downloaded chrono-tz v0.10.4 [INFO] [stderr] Downloaded now v0.1.3 [INFO] [stderr] Downloaded bincode_derive v2.0.1 [INFO] [stderr] Downloaded zerocopy v0.8.38 [INFO] [stderr] Downloaded compact_str v0.9.0 [INFO] [stderr] Downloaded gtars-core v0.5.5 [INFO] [stderr] Downloaded skiplist v0.6.0 [INFO] [stderr] Downloaded safe_arch v0.7.4 [INFO] [stderr] Downloaded wide v0.7.33 [INFO] [stderr] Downloaded polars-mem-engine v0.51.0 [INFO] [stderr] Downloaded rand_distr v0.5.1 [INFO] [stderr] Downloaded polars-sql v0.51.0 [INFO] [stderr] Downloaded bincode v2.0.1 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded polars-expr v0.51.0 [INFO] [stderr] Downloaded fast-float2 v0.2.3 [INFO] [stderr] Downloaded quick-xml v0.38.4 [INFO] [stderr] Downloaded quote v0.6.13 [INFO] [stderr] Downloaded polars-parquet-format v0.1.0 [INFO] [stderr] Downloaded boxcar v0.2.14 [INFO] [stderr] Downloaded lz4 v1.28.1 [INFO] [stderr] Downloaded polars-dtype v0.51.0 [INFO] [stderr] Downloaded polars-schema v0.51.0 [INFO] [stderr] Downloaded polars-error v0.51.0 [INFO] [stderr] Downloaded md-5 v0.10.6 [INFO] [stderr] Downloaded polars-lazy v0.51.0 [INFO] [stderr] Downloaded fs4 v0.13.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded polars v0.51.0 [INFO] [stderr] Downloaded strum_macros v0.26.4 [INFO] [stderr] Downloaded recursive v0.1.1 [INFO] [stderr] Downloaded polars-compute v0.51.0 [INFO] [stderr] Downloaded atoi_simd v0.16.1 [INFO] [stderr] Downloaded ordered-float v5.1.0 [INFO] [stderr] Downloaded xxhash-rust v0.8.15 [INFO] [stderr] Downloaded array-init-cursor v0.2.1 [INFO] [stderr] Downloaded planus v1.1.1 [INFO] [stderr] Downloaded serde_stacker v0.1.14 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded strength_reduce v0.2.4 [INFO] [stderr] Downloaded unicode-reverse v1.0.9 [INFO] [stderr] Downloaded virtue v0.0.18 [INFO] [stderr] Downloaded castaway v0.2.4 [INFO] [stderr] Downloaded polars-arrow-format v0.2.1 [INFO] [stderr] Downloaded signal-hook v0.3.18 [INFO] [stderr] Downloaded zmij v1.0.19 [INFO] [stderr] Downloaded yansi v1.0.1 [INFO] [stderr] Downloaded pretty_assertions v1.4.1 [INFO] [stderr] Downloaded simba v0.9.1 [INFO] [stderr] Downloaded strum v0.26.3 [INFO] [stderr] Downloaded argminmax v0.6.3 [INFO] [stderr] Downloaded phf_shared v0.12.1 [INFO] [stderr] Downloaded polars-row v0.51.0 [INFO] [stderr] Downloaded polars-time v0.51.0 [INFO] [stderr] Downloaded unty v0.0.4 [INFO] [stderr] Downloaded polars-utils v0.51.0 [INFO] [stderr] Downloaded num-rational v0.4.2 [INFO] [stderr] Downloaded wasm-bindgen-futures v0.4.58 [INFO] [stderr] Downloaded diff v0.1.13 [INFO] [stderr] Downloaded recursive-proc-macro-impl v0.1.1 [INFO] [stderr] Downloaded psm v0.1.29 [INFO] [stderr] Downloaded toml_parser v1.0.6+spec-1.1.0 [INFO] [stderr] Downloaded streaming-decompression v0.1.2 [INFO] [stderr] Downloaded debug_unsafe v0.1.3 [INFO] [stderr] Downloaded polars-parquet v0.51.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+91775dbec9771aa0c1b9ebe268eb5bd271e79a7a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ed562347ec779583bbac50d00f184bff24a595f6d4b28ce6588637df0e1439ac [INFO] running `Command { std: "docker" "start" "-a" "ed562347ec779583bbac50d00f184bff24a595f6d4b28ce6588637df0e1439ac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ed562347ec779583bbac50d00f184bff24a595f6d4b28ce6588637df0e1439ac", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ed562347ec779583bbac50d00f184bff24a595f6d4b28ce6588637df0e1439ac", kill_on_drop: false }` [INFO] [stdout] ed562347ec779583bbac50d00f184bff24a595f6d4b28ce6588637df0e1439ac [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+91775dbec9771aa0c1b9ebe268eb5bd271e79a7a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a6917aae491e8286bf601a46775a4e1de16a56133a5818e9ad3ef1f8ac2dac27 [INFO] running `Command { std: "docker" "start" "-a" "a6917aae491e8286bf601a46775a4e1de16a56133a5818e9ad3ef1f8ac2dac27", kill_on_drop: false }` [INFO] [stderr] Compiling quote v1.0.44 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling libc v0.2.180 [INFO] [stderr] Compiling zerocopy v0.8.38 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking memchr v2.7.6 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking crypto-common v0.1.7 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Compiling hashbrown v0.16.1 [INFO] [stderr] Compiling semver v1.0.27 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling winnow v0.7.14 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Checking regex-syntax v0.8.9 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling syn v2.0.114 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling indexmap v2.13.0 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling toml_datetime v0.7.5+spec-1.1.0 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking md-5 v0.10.6 [INFO] [stderr] Compiling rstest_macros v0.26.1 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking tokio v1.49.0 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking ryu v1.0.22 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Compiling toml_parser v1.0.6+spec-1.1.0 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling relative-path v1.9.3 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking futures-timer v3.0.3 [INFO] [stderr] Checking yansi v1.0.1 [INFO] [stderr] Checking diff v0.1.13 [INFO] [stderr] Checking pretty_assertions v1.4.1 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling toml_edit v0.23.10+spec-1.0.0 [INFO] [stderr] Compiling proc-macro-crate v3.4.0 [INFO] [stderr] Checking regex v1.12.3 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling futures-macro v0.3.31 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking futures-util v0.3.31 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking gtars-core v0.5.5 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking gtars-overlaprs v0.5.1 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking rstest v0.26.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Checking gtars-genomicdist v0.5.3 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `crate::errors::BedClassifierError` [INFO] [stdout] --> src/bed_classifier.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use crate::errors::BedClassifierError; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gtars_core::models::RegionSet` [INFO] [stdout] --> src/bed_classifier.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use gtars_core::models::RegionSet; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `regex::Regex` [INFO] [stdout] --> src/bed_classifier.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use regex::Regex; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::errors::BedClassifierError` [INFO] [stdout] --> src/bed_classifier.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use crate::errors::BedClassifierError; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `gtars_core::models::RegionSet` [INFO] [stdout] --> src/bed_classifier.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use gtars_core::models::RegionSet; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `regex::Regex` [INFO] [stdout] --> src/bed_classifier.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use regex::Regex; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `super::*` [INFO] [stdout] --> src/bed_classifier.rs:363:9 [INFO] [stdout] | [INFO] [stdout] 363 | use super::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_test_path` is never used [INFO] [stdout] --> src/bed_classifier.rs:365:8 [INFO] [stdout] | [INFO] [stdout] 365 | fn get_test_path(file_name: &str) -> std::path::PathBuf { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 49.84s [INFO] running `Command { std: "docker" "inspect" "a6917aae491e8286bf601a46775a4e1de16a56133a5818e9ad3ef1f8ac2dac27", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a6917aae491e8286bf601a46775a4e1de16a56133a5818e9ad3ef1f8ac2dac27", kill_on_drop: false }` [INFO] [stdout] a6917aae491e8286bf601a46775a4e1de16a56133a5818e9ad3ef1f8ac2dac27