[INFO] cloning repository https://github.com/bluenote-1577/haplotype_phaser
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bluenote-1577/haplotype_phaser" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fhaplotype_phaser", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fhaplotype_phaser'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e3f281875173515a17b85611fc74a1ae598c120d
[INFO] checking bluenote-1577/haplotype_phaser/e3f281875173515a17b85611fc74a1ae598c120d against master#46424fb5054f211ec836c5c03159f92e46bb35ac for pr-139042
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbluenote-1577%2Fhaplotype_phaser" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/bluenote-1577/haplotype_phaser on toolchain 46424fb5054f211ec836c5c03159f92e46bb35ac
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/bluenote-1577/haplotype_phaser
[INFO] finished tweaking git repo https://github.com/bluenote-1577/haplotype_phaser
[INFO] tweaked toml for git repo https://github.com/bluenote-1577/haplotype_phaser written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/bluenote-1577/haplotype_phaser already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded permute v0.1.0
[INFO] [stderr]   Downloaded bio-types v0.7.0
[INFO] [stderr]   Downloaded predicates v1.0.5
[INFO] [stderr]   Downloaded statrs v0.13.0
[INFO] [stderr]   Downloaded rust-htslib v0.32.0
[INFO] [stderr]   Downloaded libz-sys v1.1.0
[INFO] [stderr]   Downloaded hts-sys v1.10.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f395fc78b39e86fcf143cad97d8663ff9cabc90845ba07f851349af11148cff8
[INFO] running `Command { std: "docker" "start" "-a" "f395fc78b39e86fcf143cad97d8663ff9cabc90845ba07f851349af11148cff8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f395fc78b39e86fcf143cad97d8663ff9cabc90845ba07f851349af11148cff8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f395fc78b39e86fcf143cad97d8663ff9cabc90845ba07f851349af11148cff8", kill_on_drop: false }`
[INFO] [stdout] f395fc78b39e86fcf143cad97d8663ff9cabc90845ba07f851349af11148cff8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5bf1af12cb3dd570251066956e87653d1e16cbd3a05790d04f4bae934a3c8395
[INFO] running `Command { std: "docker" "start" "-a" "5bf1af12cb3dd570251066956e87653d1e16cbd3a05790d04f4bae934a3c8395", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling libc v0.2.74
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.19
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.38
[INFO] [stderr]    Compiling version_check v0.9.2
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling typenum v1.12.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.9
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking regex-syntax v0.6.18
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking tinyvec v0.3.4
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling standback v0.2.9
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling rayon-core v1.7.1
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling serde v1.0.115
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling serde_derive v1.0.115
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]     Checking unicode-normalization v0.1.13
[INFO] [stderr]     Checking aho-corasick v0.7.13
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling proc-macro-hack v0.5.18
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling time v0.2.16
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking crossbeam-queue v0.2.3
[INFO] [stderr]    Compiling rayon v1.3.1
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking either v1.6.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]     Checking ansi_term v0.11.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rand_pcg v0.2.1
[INFO] [stderr]     Checking permute v0.1.0
[INFO] [stderr]     Checking predicates-core v1.0.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]     Checking float-cmp v0.8.0
[INFO] [stderr]     Checking treeline v0.1.0
[INFO] [stderr]     Checking difference v2.0.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking predicates-tree v1.0.0
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking generic-array v0.13.2
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]    Compiling libz-sys v1.1.0
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking regex v1.3.9
[INFO] [stderr]     Checking nalgebra v0.19.0
[INFO] [stderr]     Checking predicates v1.0.5
[INFO] [stderr]     Checking assert_cmd v1.0.1
[INFO] [stderr]    Compiling time-macros-impl v0.1.1
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]     Checking time-macros v0.1.0
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking rust-htslib v0.32.0
[INFO] [stderr]     Checking statrs v0.13.0
[INFO] [stderr]     Checking flopp v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused macro definition: `debug`
[INFO] [stdout]   --> src/local_clustering.rs:11:14
[INFO] [stdout]    |
[INFO] [stdout] 11 | macro_rules! debug {
[INFO] [stdout]    |              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_macros)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused macro definition: `debug`
[INFO] [stdout]   --> src/local_clustering.rs:11:14
[INFO] [stdout]    |
[INFO] [stdout] 11 | macro_rules! debug {
[INFO] [stdout]    |              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_macros)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `block`
[INFO] [stdout]    --> src/file_reader.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |     for (i, block) in blocks.iter().enumerate() {
[INFO] [stdout]     |             ^^^^^ help: if this is intentional, prefix it with an underscore: `_block`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `number_references` is assigned to, but never used
[INFO] [stdout]    --> src/file_reader.rs:262:13
[INFO] [stdout]     |
[INFO] [stdout] 262 |     let mut number_references = 0;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: consider using `_number_references` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `number_references` is never read
[INFO] [stdout]    --> src/file_reader.rs:265:13
[INFO] [stdout]     |
[INFO] [stdout] 265 |             number_references = content.len();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `dist`
[INFO] [stdout]    --> src/vcf_polishing.rs:717:17
[INFO] [stdout]     |
[INFO] [stdout] 717 |             let dist = &part_size_distribution_sum[j];
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_dist`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `all_frags`
[INFO] [stdout]    --> src/vcf_polishing.rs:641:5
[INFO] [stdout]     |
[INFO] [stdout] 641 |     all_frags: &'a Vec<Frag>,
[INFO] [stdout]     |     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_all_frags`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `populate_clusters2_binom` is never used
[INFO] [stdout]    --> src/local_clustering.rs:427:4
[INFO] [stdout]     |
[INFO] [stdout] 427 | fn populate_clusters2_binom(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `populate_clusters1` is never used
[INFO] [stdout]    --> src/local_clustering.rs:525:4
[INFO] [stdout]     |
[INFO] [stdout] 525 | fn populate_clusters1(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_best_perms_mec` is never used
[INFO] [stdout]    --> src/vcf_polishing.rs:118:4
[INFO] [stdout]     |
[INFO] [stdout] 118 | fn get_best_perms_mec(part1: &Vec<FxHashSet<&Frag>>, part2: &Vec<FxHashSet<&Frag>>) -> Vec<Vec<usize>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_mec_from_part` is never used
[INFO] [stdout]    --> src/vcf_polishing.rs:249:4
[INFO] [stdout]     |
[INFO] [stdout] 249 | fn get_mec_from_part(part : &Vec<FxHashSet<&Frag>>) -> i32{
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&[u8]` instead of cloning the inner type
[INFO] [stdout]    --> src/file_reader.rs:365:30
[INFO] [stdout]     |
[INFO] [stdout] 365 |         keys.insert(ref_chrom.clone());
[INFO] [stdout]     |                              ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `block`
[INFO] [stdout]    --> src/file_reader.rs:134:13
[INFO] [stdout]     |
[INFO] [stdout] 134 |     for (i, block) in blocks.iter().enumerate() {
[INFO] [stdout]     |             ^^^^^ help: if this is intentional, prefix it with an underscore: `_block`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable `number_references` is assigned to, but never used
[INFO] [stdout]    --> src/file_reader.rs:262:13
[INFO] [stdout]     |
[INFO] [stdout] 262 |     let mut number_references = 0;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: consider using `_number_references` instead
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `number_references` is never read
[INFO] [stdout]    --> src/file_reader.rs:265:13
[INFO] [stdout]     |
[INFO] [stdout] 265 |             number_references = content.len();
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `dist`
[INFO] [stdout]    --> src/vcf_polishing.rs:717:17
[INFO] [stdout]     |
[INFO] [stdout] 717 |             let dist = &part_size_distribution_sum[j];
[INFO] [stdout]     |                 ^^^^ help: if this is intentional, prefix it with an underscore: `_dist`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `all_frags`
[INFO] [stdout]    --> src/vcf_polishing.rs:641:5
[INFO] [stdout]     |
[INFO] [stdout] 641 |     all_frags: &'a Vec<Frag>,
[INFO] [stdout]     |     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_all_frags`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `populate_clusters2_binom` is never used
[INFO] [stdout]    --> src/local_clustering.rs:427:4
[INFO] [stdout]     |
[INFO] [stdout] 427 | fn populate_clusters2_binom(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `populate_clusters1` is never used
[INFO] [stdout]    --> src/local_clustering.rs:525:4
[INFO] [stdout]     |
[INFO] [stdout] 525 | fn populate_clusters1(
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_best_perms_mec` is never used
[INFO] [stdout]    --> src/vcf_polishing.rs:118:4
[INFO] [stdout]     |
[INFO] [stdout] 118 | fn get_best_perms_mec(part1: &Vec<FxHashSet<&Frag>>, part2: &Vec<FxHashSet<&Frag>>) -> Vec<Vec<usize>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `get_mec_from_part` is never used
[INFO] [stdout]    --> src/vcf_polishing.rs:249:4
[INFO] [stdout]     |
[INFO] [stdout] 249 | fn get_mec_from_part(part : &Vec<FxHashSet<&Frag>>) -> i32{
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&[u8]` instead of cloning the inner type
[INFO] [stdout]    --> src/file_reader.rs:365:30
[INFO] [stdout]     |
[INFO] [stdout] 365 |         keys.insert(ref_chrom.clone());
[INFO] [stdout]     |                              ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(suspicious_double_ref_op)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `predicates::prelude::*`
[INFO] [stdout]  --> tests/integration_test.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use predicates::prelude::*; // Used for writing assertions
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::time::Instant`
[INFO] [stdout]  --> tests/frag_reader_test.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::time::Instant;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `FxHashMap`
[INFO] [stdout]  --> tests/frag_reader_test.rs:5:24
[INFO] [stdout]   |
[INFO] [stdout] 5 | use fxhash::{FxHashSet,FxHashMap};
[INFO] [stdout]   |                        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BTreeMap` and `HashSet`
[INFO] [stdout]  --> tests/frag_reader_test.rs:6:24
[INFO] [stdout]   |
[INFO] [stdout] 6 | use std::collections::{HashSet,BTreeMap};
[INFO] [stdout]   |                        ^^^^^^^ ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `indexed_reads`
[INFO] [stdout]   --> tests/frag_reader_test.rs:57:9
[INFO] [stdout]    |
[INFO] [stdout] 57 |     let indexed_reads = utils_frags::get_all_overlaps(frags);
[INFO] [stdout]    |         ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_indexed_reads`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 1m 12s
[INFO] running `Command { std: "docker" "inspect" "5bf1af12cb3dd570251066956e87653d1e16cbd3a05790d04f4bae934a3c8395", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5bf1af12cb3dd570251066956e87653d1e16cbd3a05790d04f4bae934a3c8395", kill_on_drop: false }`
[INFO] [stdout] 5bf1af12cb3dd570251066956e87653d1e16cbd3a05790d04f4bae934a3c8395
