[INFO] cloning repository https://github.com/Bartrcarlson/vrt_buffer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Bartrcarlson/vrt_buffer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBartrcarlson%2Fvrt_buffer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBartrcarlson%2Fvrt_buffer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c730b792eb5f2f3d5ec8e7bed725eb680944e95d
[INFO] checking Bartrcarlson/vrt_buffer against master#46424fb5054f211ec836c5c03159f92e46bb35ac for pr-139042
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBartrcarlson%2Fvrt_buffer" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Bartrcarlson/vrt_buffer on toolchain 46424fb5054f211ec836c5c03159f92e46bb35ac
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Bartrcarlson/vrt_buffer
[INFO] finished tweaking git repo https://github.com/Bartrcarlson/vrt_buffer
[INFO] tweaked toml for git repo https://github.com/Bartrcarlson/vrt_buffer written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Bartrcarlson/vrt_buffer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 5 packages to latest compatible versions
[INFO] [stderr]     Updating bindgen v0.66.1 -> v0.69.5 (available: v0.71.1)
[INFO] [stderr]     Updating bitflags v2.3.2 -> v2.9.0
[INFO] [stderr]     Updating gdal v0.15.0 -> v0.16.0 (available: v0.18.0)
[INFO] [stderr]     Updating geo-types v0.7.10 -> v0.7.16
[INFO] [stderr]       Adding itertools v0.12.1
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded clap_derive v4.3.2
[INFO] [stderr]   Downloaded geo-types v0.7.16
[INFO] [stderr]   Downloaded clap v4.3.9
[INFO] [stderr]   Downloaded prettyplease v0.2.9
[INFO] [stderr]   Downloaded libm v0.2.7
[INFO] [stderr]   Downloaded matrixmultiply v0.3.7
[INFO] [stderr]   Downloaded chrono v0.4.26
[INFO] [stderr]   Downloaded clap_builder v4.3.9
[INFO] [stderr]   Downloaded regex v1.8.4
[INFO] [stderr]   Downloaded bindgen v0.69.5
[INFO] [stderr]   Downloaded bindgen v0.65.1
[INFO] [stderr]   Downloaded regex-syntax v0.7.2
[INFO] [stderr]   Downloaded gdal-sys v0.9.0
[INFO] [stderr]   Downloaded gdal v0.16.0
[INFO] [stderr]   Downloaded rustix v0.37.20
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5bbd28edbb01a730a3fe015f76dbd2e1a48dfc9c4824ee61006e8258c9bcafa0
[INFO] running `Command { std: "docker" "start" "-a" "5bbd28edbb01a730a3fe015f76dbd2e1a48dfc9c4824ee61006e8258c9bcafa0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5bbd28edbb01a730a3fe015f76dbd2e1a48dfc9c4824ee61006e8258c9bcafa0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5bbd28edbb01a730a3fe015f76dbd2e1a48dfc9c4824ee61006e8258c9bcafa0", kill_on_drop: false }`
[INFO] [stdout] 5bbd28edbb01a730a3fe015f76dbd2e1a48dfc9c4824ee61006e8258c9bcafa0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+46424fb5054f211ec836c5c03159f92e46bb35ac" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 001a912ee619e0765217888a38db8f98739af46a54c9cbe2952245d9745c7bbc
[INFO] running `Command { std: "docker" "start" "-a" "001a912ee619e0765217888a38db8f98739af46a54c9cbe2952245d9745c7bbc", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.63
[INFO] [stderr]    Compiling quote v1.0.28
[INFO] [stderr]    Compiling unicode-ident v1.0.9
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling prettyplease v0.2.9
[INFO] [stderr]    Compiling libm v0.2.7
[INFO] [stderr]    Compiling semver v1.0.17
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling io-lifetimes v1.0.11
[INFO] [stderr]    Compiling bindgen v0.65.1
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling libloading v0.7.4
[INFO] [stderr]    Compiling regex-syntax v0.7.2
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling rustix v0.37.20
[INFO] [stderr]    Compiling log v0.4.19
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling shlex v1.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]     Checking linux-raw-sys v0.3.8
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]     Checking anstyle-parse v0.2.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]     Checking anstyle-query v1.0.0
[INFO] [stderr]     Checking anstyle v1.0.1
[INFO] [stderr]    Compiling clang-sys v1.6.1
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking nom v7.1.3
[INFO] [stderr]    Compiling gdal v0.16.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking clap_lex v0.5.0
[INFO] [stderr]    Compiling which v4.4.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking syn v2.0.22
[INFO] [stderr]     Checking bitflags v2.9.0
[INFO] [stderr]     Checking itertools v0.12.1
[INFO] [stderr]     Checking geo-types v0.7.16
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]     Checking chrono v0.4.26
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling regex v1.8.4
[INFO] [stderr]     Checking cexpr v0.6.0
[INFO] [stderr]     Checking is-terminal v0.4.7
[INFO] [stderr]     Checking anstream v0.3.2
[INFO] [stderr]     Checking clap_builder v4.3.9
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling clap_derive v4.3.2
[INFO] [stderr]     Checking clap v4.3.9
[INFO] [stderr]    Compiling gdal-sys v0.9.0
[INFO] [stderr] error: failed to run custom build command for `gdal-sys v0.9.0`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/gdal-sys-0f1b27238cf66b14/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_INCLUDE_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_LIB_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_HOME
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_VERSION
[INFO] [stderr]   cargo:rerun-if-env-changed=GDAL_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   wrapper.h:5:10: fatal error: 'cpl_atomic_ops.h' file not found
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/gdal-sys-0.9.0/build.rs:37:10:
[INFO] [stderr]   Unable to generate bindings: ClangDiagnostic("wrapper.h:5:10: fatal error: 'cpl_atomic_ops.h' file not found\n")
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5fabf5947292 - std::backtrace_rs::backtrace::libunwind::trace::hfe33f3fca02d9d49
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5fabf5947292 - std::backtrace_rs::backtrace::trace_unsynchronized::hf8c1336b7abecebc
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5fabf5947292 - std::sys::backtrace::_print_fmt::h1cc3b7371fcb02ce
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5fabf5947292 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h3fdbad3682625d65
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5fabf5970f43 - core::fmt::rt::Argument::fmt::hac739edf89f473e5
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/core/src/fmt/rt.rs:184:76
[INFO] [stderr]      5:     0x5fabf5970f43 - core::fmt::write::h46b3661118fd93d9
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/core/src/fmt/mod.rs:1480:21
[INFO] [stderr]      6:     0x5fabf5944093 - std::io::default_write_fmt::h07a956b98e0e549f
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5fabf5944093 - std::io::Write::write_fmt::hefeac8c5ed2b4ca0
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/io/mod.rs:1914:13
[INFO] [stderr]      8:     0x5fabf59470e2 - std::sys::backtrace::BacktraceLock::print::hc92ef2ccd32eaf3d
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5fabf5948b82 - std::panicking::default_hook::{{closure}}::h26c6ecc533f19c32
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:300:22
[INFO] [stderr]     10:     0x5fabf5948985 - std::panicking::default_hook::he6d1a5a8f8627255
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x5fabf59495a2 - std::panicking::rust_panic_with_hook::hc6a05938888c0a6d
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x5fabf594932a - std::panicking::begin_panic_handler::{{closure}}::hce41832356916883
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:706:13
[INFO] [stderr]     13:     0x5fabf5947799 - std::sys::backtrace::__rust_end_short_backtrace::h809ad2921436b614
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/sys/backtrace.rs:168:18
[INFO] [stderr]     14:     0x5fabf5948fbd - __rustc[13f85059a3e01eb3]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x5fabf596f270 - core::panicking::panic_fmt::h7e568a56ffdf448b
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x5fabf596f706 - core::result::unwrap_failed::hf571b8dac5f7d98d
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/core/src/result.rs:1704:5
[INFO] [stderr]     17:     0x5fabf5493414 - core::result::Result<T,E>::expect::hbc8999577509b769
[INFO] [stderr]     18:     0x5fabf5495011 - build_script_build::write_bindings::he04ae6ceae8077e6
[INFO] [stderr]     19:     0x5fabf54969fd - build_script_build::main::hc32213a28d39a89e
[INFO] [stderr]     20:     0x5fabf5492573 - core::ops::function::FnOnce::call_once::h31aca22d6d5439d0
[INFO] [stderr]     21:     0x5fabf5492396 - std::sys::backtrace::__rust_begin_short_backtrace::h95b8f904d317e8fc
[INFO] [stderr]     22:     0x5fabf5492359 - std::rt::lang_start::{{closure}}::h17ae37f632a535f6
[INFO] [stderr]     23:     0x5fabf593edb0 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h07820d99f666c4f4
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     24:     0x5fabf593edb0 - std::panicking::try::do_call::hcb349621034e7d22
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:589:40
[INFO] [stderr]     25:     0x5fabf593edb0 - std::panicking::try::h14d805015e715701
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:552:19
[INFO] [stderr]     26:     0x5fabf593edb0 - std::panic::catch_unwind::he07ff3323b1b1ad4
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panic.rs:359:14
[INFO] [stderr]     27:     0x5fabf593edb0 - std::rt::lang_start_internal::{{closure}}::he746c4aa7e6c87ae
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/rt.rs:168:24
[INFO] [stderr]     28:     0x5fabf593edb0 - std::panicking::try::do_call::h5c36b323e35fe62d
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:589:40
[INFO] [stderr]     29:     0x5fabf593edb0 - std::panicking::try::hb9a2d1353ef314fe
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panicking.rs:552:19
[INFO] [stderr]     30:     0x5fabf593edb0 - std::panic::catch_unwind::he0661a914ab09041
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/panic.rs:359:14
[INFO] [stderr]     31:     0x5fabf593edb0 - std::rt::lang_start_internal::h690c392d3d3c052a
[INFO] [stderr]                                  at /rustc/46424fb5054f211ec836c5c03159f92e46bb35ac/library/std/src/rt.rs:164:5
[INFO] [stderr]     32:     0x5fabf5492341 - std::rt::lang_start::hb39afa8fd9df087f
[INFO] [stderr]     33:     0x5fabf5497175 - main
[INFO] [stderr]     34:     0x789759cfc1ca - <unknown>
[INFO] [stderr]     35:     0x789759cfc28b - __libc_start_main
[INFO] [stderr]     36:     0x5fabf5491965 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "001a912ee619e0765217888a38db8f98739af46a54c9cbe2952245d9745c7bbc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "001a912ee619e0765217888a38db8f98739af46a54c9cbe2952245d9745c7bbc", kill_on_drop: false }`
[INFO] [stdout] 001a912ee619e0765217888a38db8f98739af46a54c9cbe2952245d9745c7bbc
