[INFO] cloning repository https://github.com/monarch-initiative/semsimian
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/monarch-initiative/semsimian" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9dd28b880ce041874ccfb39dc589490ec9838b6e
[INFO] checking monarch-initiative/semsimian against try#411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51 for pr-138844
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/monarch-initiative/semsimian on toolchain 411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/monarch-initiative/semsimian
[INFO] finished tweaking git repo https://github.com/monarch-initiative/semsimian
[INFO] tweaked toml for git repo https://github.com/monarch-initiative/semsimian written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/monarch-initiative/semsimian already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: failed to save last-use data
[INFO] [stderr] This may prevent cargo from accurately tracking what is being used in its global cache. This information is used for automatically removing unused data in the cache.
[INFO] [stderr] 
[INFO] [stderr] database or disk is full
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   Error code 13: Insertion failed because database is full
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c97408c6a88f1820534b3fb37fbc06bd789efa2e4c9a9351a4f5941a64ed7ad3
[INFO] running `Command { std: "docker" "start" "-a" "c97408c6a88f1820534b3fb37fbc06bd789efa2e4c9a9351a4f5941a64ed7ad3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c97408c6a88f1820534b3fb37fbc06bd789efa2e4c9a9351a4f5941a64ed7ad3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c97408c6a88f1820534b3fb37fbc06bd789efa2e4c9a9351a4f5941a64ed7ad3", kill_on_drop: false }`
[INFO] [stdout] c97408c6a88f1820534b3fb37fbc06bd789efa2e4c9a9351a4f5941a64ed7ad3
[INFO] checking monarch-initiative/semsimian against try#411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51 for pr-138844
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/monarch-initiative/semsimian on toolchain 411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/monarch-initiative/semsimian
[INFO] finished tweaking git repo https://github.com/monarch-initiative/semsimian
[INFO] tweaked toml for git repo https://github.com/monarch-initiative/semsimian written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/monarch-initiative/semsimian already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4b26683ee3c49f365255c425c23003cbf4366de097804722c29c5bbbee3624d2" "/opt/rustwide/cargo-home/bin/cargo" "+411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 771ba5d3450c6371c2b27500e0ff7ce58ea8982615d6cef3a8a4530a9b39d751
[INFO] running `Command { std: "docker" "start" "-a" "771ba5d3450c6371c2b27500e0ff7ce58ea8982615d6cef3a8a4530a9b39d751", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "771ba5d3450c6371c2b27500e0ff7ce58ea8982615d6cef3a8a4530a9b39d751", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "771ba5d3450c6371c2b27500e0ff7ce58ea8982615d6cef3a8a4530a9b39d751", kill_on_drop: false }`
[INFO] [stdout] 771ba5d3450c6371c2b27500e0ff7ce58ea8982615d6cef3a8a4530a9b39d751
[INFO] checking monarch-initiative/semsimian against try#411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51 for pr-138844
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] error: unable to write file tests/integration_test.rs
[INFO] [stderr] error: unable to write file tests/test_associations_search.rs
[INFO] [stderr] error: unable to write file tests/test_calculate_similarity_for_association_search.rs
[INFO] [stderr] error: unable to write file tests/test_termset_pairwise_similarity.rs
[INFO] [stderr] fatal: unable to checkout working tree
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 
[INFO] checking monarch-initiative/semsimian against try#411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51 for pr-138844
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] error: unable to write file tests/data/go-nucleus.db
[INFO] [stderr] error: unable to write file tests/data/go-nucleus_ic_map.tsv
[INFO] [stderr] fatal: cannot create directory at 'tests/data/output': No space left on device
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 
[INFO] checking monarch-initiative/semsimian against try#411f3ca0d8086d5a27e2aaa79b9ff41f53ab2f51 for pr-138844
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmonarch-initiative%2Fsemsimian" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] error: unable to write file notebooks/populate_term_association.ipynb
[INFO] [stderr] error: unable to write file pyproject.toml
[INFO] [stderr] fatal: cannot create directory at 'python': No space left on device
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 


failed to checkout https://github.com/monarch-initiative/semsimian

Caused by:
    command failed: exit status: 128