[INFO] fetching crate minimap2-sys 0.1.21+minimap2.2.28... [INFO] checking minimap2-sys-0.1.21+minimap2.2.28 against master#17ffbc81a30c094193836a5d7f90dff273b5df93 for pr-138785 [INFO] extracting crate minimap2-sys 0.1.21+minimap2.2.28 into /workspace/builds/worker-5-tc2/source [INFO] validating manifest of crates.io crate minimap2-sys 0.1.21+minimap2.2.28 on toolchain 17ffbc81a30c094193836a5d7f90dff273b5df93 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17ffbc81a30c094193836a5d7f90dff273b5df93" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate minimap2-sys 0.1.21+minimap2.2.28 [INFO] finished tweaking crates.io crate minimap2-sys 0.1.21+minimap2.2.28 [INFO] tweaked toml for crates.io crate minimap2-sys 0.1.21+minimap2.2.28 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17ffbc81a30c094193836a5d7f90dff273b5df93" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 38 packages to latest compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+17ffbc81a30c094193836a5d7f90dff273b5df93" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+17ffbc81a30c094193836a5d7f90dff273b5df93" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a49a1b4c006301d6644cdbd113a10816b4f475f1bf1ba8a77019e3faf394a68e [INFO] running `Command { std: "docker" "start" "-a" "a49a1b4c006301d6644cdbd113a10816b4f475f1bf1ba8a77019e3faf394a68e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a49a1b4c006301d6644cdbd113a10816b4f475f1bf1ba8a77019e3faf394a68e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a49a1b4c006301d6644cdbd113a10816b4f475f1bf1ba8a77019e3faf394a68e", kill_on_drop: false }` [INFO] [stdout] a49a1b4c006301d6644cdbd113a10816b4f475f1bf1ba8a77019e3faf394a68e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:b0b074c097205a61b89e8ad263052f976b2b332c4dc5f02aef1fe52501660d6e" "/opt/rustwide/cargo-home/bin/cargo" "+17ffbc81a30c094193836a5d7f90dff273b5df93" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9daf81b85bc9aca594b0231a04ad7c4473edbaaa6fa51ccf8cca58fa25617791 [INFO] running `Command { std: "docker" "start" "-a" "9daf81b85bc9aca594b0231a04ad7c4473edbaaa6fa51ccf8cca58fa25617791", kill_on_drop: false }` [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling libc v0.2.171 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling cc v1.2.18 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 (/opt/rustwide/workdir) [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c: In function 'mm_idx_load': [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:520:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 520 | fread(&l, 1, 1, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:523:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 523 | fread(s->name, 1, l, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:526:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 526 | fread(&s->len, 4, 1, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:536:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 536 | fread(&b->n, 4, 1, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:538:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 538 | fread(b->p, 8, b->n, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:539:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 539 | fread(&size, 4, 1, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:546:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 546 | fread(x, 8, 2, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/index.c:554:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 554 | fread(mi->S, 4, (sum_len + 7) / 8, fp); [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: minimap2/ksw2_extd2_sse.c:401:1: fatal error: error writing to /tmp/ccrJ2EKD.s: No space left on device [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: 401 | } [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: | ^ [INFO] [stderr] warning: minimap2-sys@0.1.21+minimap2.2.28: compilation terminated. [INFO] [stderr] error: failed to run custom build command for `minimap2-sys v0.1.21+minimap2.2.28 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/minimap2-sys-e5db6a634221c26d/build-script-build` (exit status: 1) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rustc-link-lib=m [INFO] [stderr] cargo:rustc-link-lib=z [INFO] [stderr] cargo:rustc-link-lib=pthread [INFO] [stderr] cargo:rerun-if-changed=minimap2/*.c [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=SYSROOT [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rustc-link-search=native=/usr/lib/x86_64-linux-gnu [INFO] [stderr] cargo:rustc-link-lib=z [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=ZLIB_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] TARGET = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] HOST = Some(x86_64-unknown-linux-gnu) [INFO] [stderr] cargo:rerun-if-env-changed=CC_x86_64-unknown-linux-gnu [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_x86_64_unknown_linux_gnu [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CC [INFO] [stderr] HOST_CC = None [INFO] [stderr] cargo:rerun-if-env-changed=CC [INFO] [stderr] CC = None [INFO] [stderr] cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT [INFO] [stderr] RUSTC_WRAPPER = None [INFO] [stderr] cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some(true) [INFO] [stderr] CARGO_CFG_TARGET_FEATURE = Some(fxsr,sse,sse2,x87) [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS [INFO] [stderr] CFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=HOST_CFLAGS [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS_x86_64_unknown_linux_gnu [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] cargo:rerun-if-env-changed=CFLAGS_x86_64-unknown-linux-gnu [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CARGO_ENCODED_RUSTFLAGS = Some(--cap-lints=forbid) [INFO] [stderr] cargo:warning=minimap2/index.c: In function 'mm_idx_load': [INFO] [stderr] cargo:warning=minimap2/index.c:520:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 520 | fread(&l, 1, 1, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:523:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 523 | fread(s->name, 1, l, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:526:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 526 | fread(&s->len, 4, 1, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:536:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 536 | fread(&b->n, 4, 1, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:538:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 538 | fread(b->p, 8, b->n, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:539:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 539 | fread(&size, 4, 1, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:546:25: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 546 | fread(x, 8, 2, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/index.c:554:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] [INFO] [stderr] cargo:warning= 554 | fread(mi->S, 4, (sum_len + 7) / 8, fp); [INFO] [stderr] cargo:warning= | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [INFO] [stderr] cargo:warning=minimap2/ksw2_extd2_sse.c:401:1: fatal error: error writing to /tmp/ccrJ2EKD.s: No space left on device [INFO] [stderr] cargo:warning= 401 | } [INFO] [stderr] cargo:warning= | ^ [INFO] [stderr] cargo:warning=compilation terminated. [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] error occurred in cc-rs: command did not execute successfully (status code exit status: 1): LC_ALL="C" "cc" "-O2" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-4" "-fno-omit-frame-pointer" "-m64" "-I" "minimap2" "-I" "minimap2/" "-I" "/usr/include" "-I" "/usr/include" "-Wc++-compat" "-msse2" "-DKSW_SSE2_ONLY" "-mno-sse4.1" "-DHAVE_KALLOC" "-o" "/opt/rustwide/target/debug/build/minimap2-sys-5fc714693c7b5539/out/1c739c8dc309e843-ksw2_extd2_sse.o" "-c" "minimap2/ksw2_extd2_sse.c" [INFO] [stderr] [INFO] [stderr] [INFO] running `Command { std: "docker" "inspect" "9daf81b85bc9aca594b0231a04ad7c4473edbaaa6fa51ccf8cca58fa25617791", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9daf81b85bc9aca594b0231a04ad7c4473edbaaa6fa51ccf8cca58fa25617791", kill_on_drop: false }` [INFO] [stdout] 9daf81b85bc9aca594b0231a04ad7c4473edbaaa6fa51ccf8cca58fa25617791