[INFO] fetching crate bio 3.0.0... [INFO] testing bio-3.0.0 against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759 [INFO] extracting crate bio 3.0.0 into /workspace/builds/worker-4-tc1/source [INFO] started tweaking crates.io crate bio 3.0.0 [INFO] finished tweaking crates.io crate bio 3.0.0 [INFO] tweaked toml for crates.io crate bio 3.0.0 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate bio 3.0.0 on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate bio 3.0.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pest_generator v2.8.2 [INFO] [stderr] Downloaded multimap v0.10.1 [INFO] [stderr] Downloaded pest_derive v2.8.2 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded simba v0.9.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded pest_meta v2.8.2 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded pest v2.8.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 209e180c650737d09d78976b7b377723a426360668ee83dc586eebf646adba8e [INFO] running `Command { std: "docker" "start" "-a" "209e180c650737d09d78976b7b377723a426360668ee83dc586eebf646adba8e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "209e180c650737d09d78976b7b377723a426360668ee83dc586eebf646adba8e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "209e180c650737d09d78976b7b377723a426360668ee83dc586eebf646adba8e", kill_on_drop: false }` [INFO] [stdout] 209e180c650737d09d78976b7b377723a426360668ee83dc586eebf646adba8e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2691e53627ac98003e21e0639b8e32471d102d5318c50246deb18f3cf3371f9e [INFO] running `Command { std: "docker" "start" "-a" "2691e53627ac98003e21e0639b8e32471d102d5318c50246deb18f3cf3371f9e", kill_on_drop: false }` [INFO] [stderr] Compiling serde_core v1.0.225 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling serde v1.0.225 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling allocator-api2 v0.2.21 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling indexmap v2.11.4 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling simba v0.9.1 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling serde_derive v1.0.225 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v3.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stdout] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stdout] | [INFO] [stdout] 186 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 189 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/long.rs:583:1 [INFO] [stdout] | [INFO] [stdout] 583 | / impl_myers!( [INFO] [stdout] 584 | | usize, [INFO] [stdout] 585 | | // maximum allowed value for max_dist (see States::step) [INFO] [stdout] 586 | | usize::MAX - crate::pattern_matching::myers::word_size::(), [INFO] [stdout] ... | [INFO] [stdout] 589 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stdout] 590 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stdout] | [INFO] [stdout] 186 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 189 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/simple.rs:319:1 [INFO] [stdout] | [INFO] [stdout] 319 | / impl_myers!( [INFO] [stdout] 320 | | T::DistType, [INFO] [stdout] 321 | | T::DistType::max_value(), [INFO] [stdout] 322 | | Myers, [INFO] [stdout] 323 | | crate::pattern_matching::myers::State, [INFO] [stdout] 324 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stdout] 325 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 54s [INFO] running `Command { std: "docker" "inspect" "2691e53627ac98003e21e0639b8e32471d102d5318c50246deb18f3cf3371f9e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2691e53627ac98003e21e0639b8e32471d102d5318c50246deb18f3cf3371f9e", kill_on_drop: false }` [INFO] [stdout] 2691e53627ac98003e21e0639b8e32471d102d5318c50246deb18f3cf3371f9e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fcfcd6a73b6a0a5c0bec28760a90005a4796b737ea89e27028edc5b97e6613bf [INFO] running `Command { std: "docker" "start" "-a" "fcfcd6a73b6a0a5c0bec28760a90005a4796b737ea89e27028edc5b97e6613bf", kill_on_drop: false }` [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling bitflags v2.9.4 [INFO] [stderr] Compiling rand_chacha v0.9.0 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rand_xorshift v0.4.0 [INFO] [stderr] Compiling unarray v0.1.4 [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stdout] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stdout] | [INFO] [stdout] 186 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 189 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/long.rs:583:1 [INFO] [stdout] | [INFO] [stdout] 583 | / impl_myers!( [INFO] [stdout] 584 | | usize, [INFO] [stdout] 585 | | // maximum allowed value for max_dist (see States::step) [INFO] [stdout] 586 | | usize::MAX - crate::pattern_matching::myers::word_size::(), [INFO] [stdout] ... | [INFO] [stdout] 589 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stdout] 590 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stdout] | [INFO] [stdout] 186 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 189 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/simple.rs:319:1 [INFO] [stdout] | [INFO] [stdout] 319 | / impl_myers!( [INFO] [stdout] 320 | | T::DistType, [INFO] [stdout] 321 | | T::DistType::max_value(), [INFO] [stdout] 322 | | Myers, [INFO] [stdout] 323 | | crate::pattern_matching::myers::State, [INFO] [stdout] 324 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stdout] 325 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rand v0.9.2 [INFO] [stderr] Compiling tempfile v3.22.0 [INFO] [stderr] Compiling rusty-fork v0.3.0 [INFO] [stderr] Compiling proptest v1.7.0 [INFO] [stderr] Compiling bio v3.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition value: `nightly` [INFO] [stdout] --> src/data_structures/qgram_index.rs:411:11 [INFO] [stdout] | [INFO] [stdout] 411 | #[cfg(feature = "nightly")] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: expected values for `feature` are: `generic-simd`, `pest`, `pest_derive`, `phylogeny`, and `runtime-dispatch-simd` [INFO] [stdout] = help: consider adding `nightly` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `tests` [INFO] [stdout] --> src/data_structures/smallints.rs:198:7 [INFO] [stdout] | [INFO] [stdout] 198 | #[cfg(tests)] [INFO] [stdout] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stdout] | [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stdout] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | EnumVariantNames, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated method `ndarray::impl_methods::>::into_shape`: Use `.into_shape_with_order()` or `.to_shape()` [INFO] [stdout] --> src/pattern_matching/pssm/protmotif.rs:196:10 [INFO] [stdout] | [INFO] [stdout] 196 | .into_shape((4, 20)) [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `test_degenerate_input` is never used [INFO] [stdout] --> src/pattern_matching/pssm/protmotif.rs:242:8 [INFO] [stdout] | [INFO] [stdout] 242 | fn test_degenerate_input() { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stdout] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stdout] | [INFO] [stdout] 186 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 189 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/long.rs:583:1 [INFO] [stdout] | [INFO] [stdout] 583 | / impl_myers!( [INFO] [stdout] 584 | | usize, [INFO] [stdout] 585 | | // maximum allowed value for max_dist (see States::step) [INFO] [stdout] 586 | | usize::MAX - crate::pattern_matching::myers::word_size::(), [INFO] [stdout] ... | [INFO] [stdout] 589 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stdout] 590 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stdout] | [INFO] [stdout] 186 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 189 | ) -> Matches [INFO] [stdout] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] ::: src/pattern_matching/myers/simple.rs:319:1 [INFO] [stdout] | [INFO] [stdout] 319 | / impl_myers!( [INFO] [stdout] 320 | | T::DistType, [INFO] [stdout] 321 | | T::DistType::max_value(), [INFO] [stdout] 322 | | Myers, [INFO] [stdout] 323 | | crate::pattern_matching::myers::State, [INFO] [stdout] 324 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stdout] 325 | | ); [INFO] [stdout] | |_- in this macro invocation [INFO] [stdout] | [INFO] [stdout] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 23s [INFO] running `Command { std: "docker" "inspect" "fcfcd6a73b6a0a5c0bec28760a90005a4796b737ea89e27028edc5b97e6613bf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fcfcd6a73b6a0a5c0bec28760a90005a4796b737ea89e27028edc5b97e6613bf", kill_on_drop: false }` [INFO] [stdout] fcfcd6a73b6a0a5c0bec28760a90005a4796b737ea89e27028edc5b97e6613bf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 0cd06b34c2241e0c1d5b5ca51aaa287b82ed786b261c8b4fa7cd1eedf0fe4917 [INFO] running `Command { std: "docker" "start" "-a" "0cd06b34c2241e0c1d5b5ca51aaa287b82ed786b261c8b4fa7cd1eedf0fe4917", kill_on_drop: false }` [INFO] [stderr] warning: unexpected `cfg` condition name: `tests` [INFO] [stderr] --> src/data_structures/smallints.rs:198:7 [INFO] [stderr] | [INFO] [stderr] 198 | #[cfg(tests)] [INFO] [stderr] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stderr] | [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated macro `EnumVariantNames`: please use `#[derive(VariantNames)]` instead [INFO] [stderr] --> src/stats/bayesian/bayes_factors.rs:20:9 [INFO] [stderr] | [INFO] [stderr] 20 | EnumVariantNames, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/data_structures/interval_tree/array_backed_interval_tree.rs:175:39 [INFO] [stderr] | [INFO] [stderr] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stderr] | ^^^^^ ----------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 175 | pub fn find>>(&self, interval: I) -> Vec> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/kmp.rs:62:27 [INFO] [stderr] | [INFO] [stderr] 62 | pub fn find_all(&self, text: T) -> Matches [INFO] [stderr] | ^^^^^ ----------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 62 | pub fn find_all(&self, text: T) -> Matches<'_, C, T::IntoIter> [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stderr] | [INFO] [stderr] 186 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] ... [INFO] [stderr] 189 | ) -> Matches [INFO] [stderr] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | [INFO] [stderr] ::: src/pattern_matching/myers/long.rs:583:1 [INFO] [stderr] | [INFO] [stderr] 583 | / impl_myers!( [INFO] [stderr] 584 | | usize, [INFO] [stderr] 585 | | // maximum allowed value for max_dist (see States::step) [INFO] [stderr] 586 | | usize::MAX - crate::pattern_matching::myers::word_size::(), [INFO] [stderr] ... | [INFO] [stderr] 589 | | crate::pattern_matching::myers::long::LongStatesHandler<'a> [INFO] [stderr] 590 | | ); [INFO] [stderr] | |_- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> src/pattern_matching/myers/myers_impl.rs:186:9 [INFO] [stderr] | [INFO] [stderr] 186 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] ... [INFO] [stderr] 189 | ) -> Matches [INFO] [stderr] | -------------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | [INFO] [stderr] ::: src/pattern_matching/myers/simple.rs:319:1 [INFO] [stderr] | [INFO] [stderr] 319 | / impl_myers!( [INFO] [stderr] 320 | | T::DistType, [INFO] [stderr] 321 | | T::DistType::max_value(), [INFO] [stderr] 322 | | Myers, [INFO] [stderr] 323 | | crate::pattern_matching::myers::State, [INFO] [stderr] 324 | | crate::pattern_matching::myers::simple::ShortStatesHandler<'a> [INFO] [stderr] 325 | | ); [INFO] [stderr] | |_- in this macro invocation [INFO] [stderr] | [INFO] [stderr] = note: this warning originates in the macro `impl_myers` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 189 | ) -> Matches<'_, T, C, I::IntoIter> [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: `bio` (lib) generated 6 warnings [INFO] [stderr] warning: unexpected `cfg` condition value: `nightly` [INFO] [stderr] --> src/data_structures/qgram_index.rs:411:11 [INFO] [stderr] | [INFO] [stderr] 411 | #[cfg(feature = "nightly")] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: expected values for `feature` are: `generic-simd`, `pest`, `pest_derive`, `phylogeny`, and `runtime-dispatch-simd` [INFO] [stderr] = help: consider adding `nightly` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition name: `tests` [INFO] [stderr] --> src/data_structures/smallints.rs:198:7 [INFO] [stderr] | [INFO] [stderr] 198 | #[cfg(tests)] [INFO] [stderr] | ^^^^^ help: there is a config with a similar name: `test` [INFO] [stderr] | [INFO] [stderr] = help: consider using a Cargo feature instead [INFO] [stderr] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stderr] [lints.rust] [INFO] [stderr] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(tests)'] } [INFO] [stderr] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(tests)");` to the top of the `build.rs` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: use of deprecated method `ndarray::impl_methods::>::into_shape`: Use `.into_shape_with_order()` or `.to_shape()` [INFO] [stderr] --> src/pattern_matching/pssm/protmotif.rs:196:10 [INFO] [stderr] | [INFO] [stderr] 196 | .into_shape((4, 20)) [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `test_degenerate_input` is never used [INFO] [stderr] --> src/pattern_matching/pssm/protmotif.rs:242:8 [INFO] [stderr] | [INFO] [stderr] 242 | fn test_degenerate_input() { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `bio` (lib test) generated 9 warnings (5 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.26s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bio-d66122816542300a) [INFO] [stdout] [INFO] [stdout] running 463 tests [INFO] [stdout] test alignment::distance::tests::test_hamming_dist_good ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_bounded_levenshtein_dist ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_hamming_dist_good ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_levenshtein_dist ... ok [INFO] [stdout] test alignment::distance::tests::test_levenshtein_dist ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_add_kmer ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_add_entry ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_deletions_ouside_band ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_ends_inside ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_deletion ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global_right_del ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_blosum62 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_aligner_new ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_band_starts_inside ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_local ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_local_empty ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_only_clips ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_left_aligned_del ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion_after_clip ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_insertion_ouside_band ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs1 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs4 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_same ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs3 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_overhangs5 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_1 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_2 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue12_3 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_big ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_issue11 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_zero_score_clips ... ok [INFO] [stdout] test alignment::pairwise::tests::test_aligner_new ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_suffix_only ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_traceback_outside_band ... ok [INFO] [stdout] test alignment::pairwise::tests::test_blosum62 ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_yclip_prefix_only ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_substitutions ... ok [INFO] [stdout] test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global_affine_ins ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global_right_del ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue12_1 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue11 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue12_3 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_issue12_2 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_local_affine_ins2 ... ok [INFO] [stdout] test alignment::pairwise::tests::test_longer_string_all_operations ... ok [INFO] [stdout] test alignment::pairwise::tests::test_scoring_from_scores ... ok [INFO] [stdout] test alignment::pairwise::tests::test_blosum62_local ... ok [INFO] [stdout] test alignment::pairwise::tests::test_semiglobal ... ok [INFO] [stdout] test alignment::pairwise::tests::test_only_clips ... ok [INFO] [stdout] test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok [INFO] [stdout] test alignment::pairwise::tests::test_left_aligned_ins ... ok [INFO] [stdout] test alignment::pairwise::tests::test_local ... ok [INFO] [stdout] test alignment::pairwise::tests::test_xclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_xclip_prefix_suffix ... ok [INFO] [stdout] test alignment::pairwise::tests::test_xclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_yclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_semiglobal_simple ... ok [INFO] [stdout] test alignment::pairwise::tests::test_yclip_prefix_suffix ... ok [INFO] [stdout] test alignment::pairwise::tests::test_yclip_suffix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::traceback_cell ... ok [INFO] [stdout] test alignment::poa::tests::test_alignment ... ok [INFO] [stdout] test alignment::poa::tests::test_alt_branched_alignment ... ok [INFO] [stdout] test alignment::poa::tests::test_branched_alignment ... ok [INFO] [stdout] test alignment::poa::tests::test_xclip_prefix_custom ... ok [INFO] [stdout] test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok [INFO] [stdout] test alignment::poa::tests::test_edge_cases ... ok [INFO] [stdout] test alignment::pairwise::tests::test_insert_only_semiglobal ... ok [INFO] [stdout] test alignment::poa::tests::test_init_graph ... ok [INFO] [stdout] test alignment::poa::tests::test_insertion_on_branch ... ok [INFO] [stdout] test alignment::pairwise::tests::test_zero_score_clips ... ok [INFO] [stdout] test alignment::poa::tests::test_xclip_suffix_custom ... ok [INFO] [stdout] test alignment::poa::tests::test_yclip_prefix_custom ... ok [INFO] [stdout] test alignment::poa::tests::test_yclip_suffix_custom ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_expanded_matches ... ok [INFO] [stdout] test alignment::poa::tests::test_poa_method_chaining ... ok [INFO] [stdout] test alignment::pairwise::tests::test_left_aligned_del ... ok [INFO] [stdout] test alignment::poa::tests::test_consensus ... ok [INFO] [stdout] test alignment::pairwise::tests::test_global ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp1 ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok [INFO] [stdout] test alphabets::dna::tests::is_no_word ... ok [INFO] [stdout] test alphabets::dna::tests::is_word ... ok [INFO] [stdout] test alphabets::dna::tests::number_is_no_word ... ok [INFO] [stdout] test alphabets::dna::tests::symbol_is_no_word ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok [INFO] [stdout] test alphabets::protein::tests::is_word ... ok [INFO] [stdout] test alignment::sparse::sparse_alignment::test_sdp2 ... ok [INFO] [stdout] test alphabets::protein::tests::iupac_contains_iupac_chars ... ok [INFO] [stdout] test alphabets::protein::tests::number_is_no_word ... ok [INFO] [stdout] test alphabets::protein::tests::symbol_is_no_word ... ok [INFO] [stdout] test alphabets::rna::tests::is_no_word ... ok [INFO] [stdout] test alphabets::protein::tests::is_no_word ... ok [INFO] [stdout] test alphabets::rna::tests::is_word ... ok [INFO] [stdout] test alphabets::rna::tests::symbol_is_no_word ... ok [INFO] [stdout] test alphabets::rna::tests::test_reverse_complement ... ok [INFO] [stdout] test alphabets::tests::test_qgram_shiftleft_overflow ... ok [INFO] [stdout] test alphabets::tests::test_qgrams ... ok [INFO] [stdout] test alphabets::rna::tests::number_is_no_word ... ok [INFO] [stdout] test alphabets::tests::test_exactsize_iterator ... ok [INFO] [stdout] test alphabets::tests::test_alphabet_eq ... ok [INFO] [stdout] test data_structures::annot_map::tests::overlaps ... ok [INFO] [stdout] test data_structures::bwt::tests::test_bwtfind ... ok [INFO] [stdout] test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok [INFO] [stdout] test data_structures::bwt::tests::test_invert_bwt ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_issue29 ... ok [INFO] [stdout] test data_structures::bwt::tests::test_occ ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex_backward_search_optimization ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex_backward_search_partial_match ... ok [INFO] [stdout] test alphabets::tests::test_rev_qgrams ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_fmindex_not_found ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_init_interval ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_push_values ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_bitenc ... ok [INFO] [stdout] test data_structures::annot_map::tests::lookup ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_smems ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_issue39 ... ok [INFO] [stdout] test data_structures::fmindex::tests::test_all_smems ... ok [INFO] [stdout] test data_structures::bwt::tests::test_occwm ... ok [INFO] [stdout] test data_structures::interval_tree::array_backed_interval_tree::tests::test_disjoint_two_element_search ... ok [INFO] [stdout] test data_structures::interval_tree::array_backed_interval_tree::tests::test_example ... ok [INFO] [stdout] test data_structures::bitenc::tests::test_push_values_edge_cases ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::from_iterator ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::iter_mut ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::test_insertion_and_intersection ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::zero_width_ranges ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_exact_matches ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_exact_matches_self ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_iterator ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_matches ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_matches ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_with_max_count ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_with_max_count_index_0 ... ok [INFO] [stdout] test data_structures::qgram_index::tests::test_qgram_sizeof_pos ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_rank_select ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_rank_k ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_rank_select2 ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_select ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_select_end ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_select_start ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_buckets ... ok [INFO] [stdout] test data_structures::interval_tree::avl_interval_tree::tests::test_insertion_and_intersection_2 ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok [INFO] [stdout] test data_structures::suffix_array::tests::can_construct_sa_for_usize ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_pos ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_pos_types ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_lms_pos ... ok [INFO] [stdout] test data_structures::rank_select::tests::test_single_select ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_builddna ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_issue10_2 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_1 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_all ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_2 ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_alldna ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_firstpos ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_lastpos ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_issue10_1 ... ok [INFO] [stdout] test io::bed::tests::test_bed_from_contig ... ok [INFO] [stdout] test io::bed::tests::spliced_to_bed ... ok [INFO] [stdout] test io::bed::tests::test_reader ... ok [INFO] [stdout] test io::bed::tests::test_reader_compact ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_buildpaper ... ok [INFO] [stdout] test io::bed::tests::test_bed_from_pos ... ok [INFO] [stdout] test io::bedpe::tests::test_bed_from_pos ... ok [INFO] [stdout] test io::bed::tests::test_writer ... ok [INFO] [stdout] test io::bed::tests::test_reader_with_comment ... ok [INFO] [stdout] test io::bedpe::tests::test_reader_compact ... ok [INFO] [stdout] test io::bedpe::tests::test_writer ... ok [INFO] [stdout] test io::common::tests::test_core_reader ... ok [INFO] [stdout] test io::common::tests::test_core_reader_compact ... ok [INFO] [stdout] test io::bedpe::tests::test_reader_with_comment ... ok [INFO] [stdout] test io::bedpe::tests::test_reader ... ok [INFO] [stdout] test io::common::tests::test_core_reader_with_comment ... ok [INFO] [stdout] test io::common::tests::test_core_writer ... ok [INFO] [stdout] test io::common::tests::test_core_setters ... ok [INFO] [stdout] test io::common::tests::test_core_reader_with_implemented_record ... ok [INFO] [stdout] test io::common::tests::test_implemented_reader ... ok [INFO] [stdout] test io::common::tests::test_writer_with_implemented_reader ... ok [INFO] [stdout] test io::fasta::tests::test_faread_trait ... ok [INFO] [stdout] test io::fasta::tests::test_index_record_fetch_by_rid_second_index_returns_second_record ... ok [INFO] [stdout] test io::fasta::tests::test_index_record_idx_by_rid_invalid_index_returns_error ... ok [INFO] [stdout] test io::fasta::tests::test_index_sequences ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader ... ok [INFO] [stdout] test io::fasta::tests::test_display_record_with_desc_id_has_space_between_id_and_desc ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_bad_reader ... ok [INFO] [stdout] test data_structures::interval_tree::array_backed_interval_tree::tests::find_arbitrary ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf ... ok [INFO] [stdout] test io::common::tests::test_implemented_record_setters ... ok [INFO] [stdout] test io::fasta::tests::test_display_record_no_desc_id_without_space_after ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_read_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok [INFO] [stdout] test data_structures::interpolation_table::tests::test_interpolation_table ... ok [INFO] [stdout] test io::fasta::tests::test_indexed_reader_reused_buffer ... ok [INFO] [stdout] test io::fasta::tests::test_reader ... ok [INFO] [stdout] test io::fasta::tests::test_reader_no_id ... ok [INFO] [stdout] test io::fasta::tests::test_reader_non_ascii_sequence ... ok [INFO] [stdout] test io::fasta::tests::test_reader_read_fails ... ok [INFO] [stdout] test io::fasta::tests::test_record_with_attrs_with_description ... ok [INFO] [stdout] test io::fasta::tests::test_record_with_attrs_without_description ... ok [INFO] [stdout] test io::fasta::tests::test_reader_read_fails_iter ... ok [INFO] [stdout] test io::fasta::tests::test_reader_wrong_header ... ok [INFO] [stdout] test io::fasta::tests::test_write_with_linewrap ... ok [INFO] [stdout] test io::fasta::tests::test_writer ... ok [INFO] [stdout] test io::fasta::tests::test_writer_to_file_dir_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_id_is_empty_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_quality_and_seq_diff_len_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_seq_is_not_ascii_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_check_valid_record ... ok [INFO] [stdout] test io::fastq::tests::test_display_record_no_desc_id_without_space_after ... ok [INFO] [stdout] test io::fastq::tests::test_display_record_with_desc_id_has_space_between_id_and_desc ... ok [INFO] [stdout] test io::fastq::tests::test_fqread_trait ... ok [INFO] [stdout] test io::fastq::tests::test_read_header_does_not_start_with_correct_char_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_read_quality_is_empty_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_read_sequence_and_quality_are_wrapped_is_handled_with_one_sequence ... ok [INFO] [stdout] test io::fastq::tests::test_read_sequence_and_quality_are_wrapped_is_handled_with_three_sequences ... ok [INFO] [stdout] test io::fastq::tests::test_read_with_missing_plus ... ok [INFO] [stdout] test io::fastq::tests::test_read_wrapped_record_with_inconsistent_wrapping_errors ... ok [INFO] [stdout] test io::fastq::tests::test_reader ... ok [INFO] [stdout] test io::fastq::tests::test_check_record_quality_is_not_ascii_raises_err ... ok [INFO] [stdout] test io::fastq::tests::test_reader_from_file_path_exists_returns_ok ... ok [INFO] [stdout] test io::fastq::tests::test_record_with_attrs ... ok [INFO] [stdout] test io::fastq::tests::test_record_iterator_next_read_returns_err_causes_next_to_return_some_err ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_idx_in_range ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_qual_idx_in_range ... ok [INFO] [stdout] test io::fasta::tests::test_writer_to_file_dir_exists_returns_ok ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_len ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_name ... ok [INFO] [stdout] test alignment::distance::tests::test_hamming_dist_bad - should panic ... ok [INFO] [stdout] test alignment::distance::tests::test_simd_hamming_dist_bad - should panic ... ok [INFO] [stdout] test io::fastq::tests::test_writer ... ok [INFO] [stdout] test io::fastq::tests::test_writer_to_file_dir_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastx::tests::test_either_record_from_records ... ok [INFO] [stdout] test io::fastq::tests::test_writer_to_file_dir_exists_returns_ok ... ok [INFO] [stdout] test io::fastx::tests::test_empty_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_empty_either_records_kind ... ok [INFO] [stdout] test data_structures::wavelet_matrix::tests::test_wm_rank_overflowpanic - should panic ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_record ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_records_err ... ok [INFO] [stdout] test io::fastx::tests::test_fasta_either_records_kind ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_record ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_records_err ... ok [INFO] [stdout] test io::fastx::tests::test_fastq_either_records_kind ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_error ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_empty ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_fasta ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_fastq ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_detailed_read_invalid ... ok [INFO] [stdout] test alignment::poa::tests::test_global_banded ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_empty ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_fasta ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_fastq ... ok [INFO] [stdout] test io::fastx::tests::test_invalid_either_records ... ok [INFO] [stdout] test io::fastx::tests::test_kind_display ... ok [INFO] [stdout] test io::fastx::tests::test_records_trait ... ok [INFO] [stdout] test io::gff::tests::test_convert_gtf2_to_gff3 ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_seek_invalid ... ok [INFO] [stdout] test io::gff::tests::test_gff_type_from_str ... ok [INFO] [stdout] test io::gff::tests::test_from_u8_creates_phase_with_value ... ok [INFO] [stdout] test io::fastx::tests::test_get_kind_file ... FAILED [INFO] [stdout] test io::bedpe::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fasta::tests::test_write_record ... FAILED [INFO] [stdout] test io::common::tests::test_implemented_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fasta::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_idx_out_of_range - should panic ... ok [INFO] [stdout] test io::common::tests::test_core_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::fastq::tests::test_sequence_read_for_record_trait_method_base_qual_idx_out_of_range - should panic ... ok [INFO] [stdout] test io::fastq::tests::test_write_record ... FAILED [INFO] [stdout] test io::fastx::tests::test_either_records_from_file ... FAILED [INFO] [stdout] test io::gff::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::bed::tests::test_reader_from_file_path_doesnt_exist_returns_err ... ok [INFO] [stdout] test io::gff::tests::test_reader_gff3 ... ok [INFO] [stdout] test io::gff::tests::test_try_into_u8_returns_value_for_phase_with_value ... ok [INFO] [stdout] test io::gff::tests::test_unknown_gff_type ... ok [INFO] [stdout] test pattern_matching::bom::tests::test_delta ... ok [INFO] [stdout] test pattern_matching::bom::tests::test_find_all_at_start ... ok [INFO] [stdout] test io::gff::tests::test_reader_gtf2 ... ok [INFO] [stdout] test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok [INFO] [stdout] test pattern_matching::horspool::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::bom::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::horspool::tests::test_shift ... ok [INFO] [stdout] test io::gff::tests::test_writer_gtf2 ... ok [INFO] [stdout] test io::gff::tests::test_writer_gff3 ... ok [INFO] [stdout] test pattern_matching::bndm::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_lps ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_delta ... ok [INFO] [stdout] test io::gff::tests::test_try_into_u8_returns_error_for_phase_with_none ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::horspool::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_distance_long ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_ambig ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_distance ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_find_all_end ... ok [INFO] [stdout] test pattern_matching::kmp::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::bndm::tests::test_find_all_at_start ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_alignment ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_lazy_longer ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_large_dist ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_longest_possible ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_long_shorter ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_traceback_path ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_traceback_path2 ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_alignment ... ok [INFO] [stdout] test io::gff::tests::test_reader_gtf2_2 ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_myers_long_overflow ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_find_all_end ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_full_position ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_shorter ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_ambig ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_lazy ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_lazy_longer ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_long_shorter ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_full_position ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_large_dist ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_lazy ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_distance ... ok [INFO] [stdout] test pattern_matching::myers::long::tests::test_position_cmp ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_distance_long ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_longest_possible ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_position_cmp ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_traceback_path2 ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::find_motif ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_n ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_traceback_path ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_shorter ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_two_bases ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_input ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_degenerate_consensus_same_bases ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_same_bases ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_degenerate_consensus_x ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_info_content ... ok [INFO] [stdout] test pattern_matching::shift_and::tests::test_find_all ... ok [INFO] [stdout] test pattern_matching::shift_and::tests::test_issue_416 ... ok [INFO] [stdout] test pattern_matching::pssm::protmotif::tests::test_scoring ... ok [INFO] [stdout] test scores::pam120::tests::test_pam120 ... ok [INFO] [stdout] test pattern_matching::shift_and::tests::test_multiple_finds ... ok [INFO] [stdout] test pattern_matching::ukkonen::tests::test_find_all_end ... ok [INFO] [stdout] test pattern_matching::ukkonen::tests::test_find_start ... ok [INFO] [stdout] test scores::blosum45::tests::test_blosum45 ... ok [INFO] [stdout] test scores::blosum30::tests::test_blosum30 ... ok [INFO] [stdout] test scores::blosum62::tests::test_blosum62 ... ok [INFO] [stdout] test seq_analysis::gc::tests::test_gc_content ... ok [INFO] [stdout] test scores::pam250::tests::test_pam250 ... ok [INFO] [stdout] test scores::pam40::tests::test_pam40 ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_no_orf ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_one_orf_with_offset ... ok [INFO] [stdout] test stats::bayesian::tests::test_expected_fdr ... ok [INFO] [stdout] test pattern_matching::pssm::dnamotif::tests::test_degenerate_consensus_three_bases ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_one_orf_no_offset ... ok [INFO] [stdout] test stats::bayesian::bayes_factors::tests::test_bayes_factor ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_two_orfs_different_offsets ... ok [INFO] [stdout] test scores::pam200::tests::test_pam200 ... ok [INFO] [stdout] test seq_analysis::orf::tests::test_three_nested_and_offset_orfs ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_backward_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_baum_welch_one_iter_example ... ok [INFO] [stdout] test stats::combinatorics::tests::test_comb_scaled ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_forward_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_with_end_backward_toy_example ... ok [INFO] [stdout] test stats::combinatorics::tests::test_comb ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_backward_simple_example ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_forward_simple_example ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok [INFO] [stdout] test stats::hmm::tests::test_recriate_discrete_backward_toy_example ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_pattern_too_long - should panic ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::impossible_global_alignment ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_gap_x_2 ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_gap_x ... ok [INFO] [stdout] test pattern_matching::myers::tests::test_pattern_too_long_builder - should panic ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_hompolymer_run_in_x ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_hompolymer_run_in_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_gap_y ... ok [INFO] [stdout] test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_interleave_gaps_x ... ok [INFO] [stdout] test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok [INFO] [stdout] test stats::hmm::tests::test_baum_welch_train_example ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::impossible_global_alignment ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_gap_x ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_interleave_gaps_x ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_gap_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_mismatch ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_same ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_interleave_gaps_y ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_phmm_vs_phhmm ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_banded ... ok [INFO] [stdout] test stats::pairhmm::pairhmm::tests::test_mismatch ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_same ... ok [INFO] [stdout] test stats::probs::tests::test_cumsum ... ok [INFO] [stdout] test stats::probs::tests::test_cap_numerical_overshoot ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_interleave_gaps_y ... ok [INFO] [stdout] test stats::probs::tests::test_empty_sum ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_multigap_y ... ok [INFO] [stdout] test stats::probs::tests::test_one_minus ... ok [INFO] [stdout] test stats::probs::tests::test_simpsons_integrate ... ok [INFO] [stdout] test stats::probs::tests::test_sub ... ok [INFO] [stdout] test stats::probs::cdf::test::test_cdf ... ok [INFO] [stdout] test stats::probs::tests::test_cap_numerical_overshoot_panic - should panic ... ok [INFO] [stdout] test stats::probs::tests::test_sum ... ok [INFO] [stdout] test stats::probs::tests::test_sum_one_zero ... ok [INFO] [stdout] test stats::probs::tests::test_trapezoidal_integrate ... ok [INFO] [stdout] test stats::probs::tests::test_zero ... ok [INFO] [stdout] test utils::fastexp::tests::test_fastexp ... ok [INFO] [stdout] test stats::probs::tests::test_trapezoidal_integrate_grid ... ok [INFO] [stdout] test utils::interval::tests::range_interval_conversions ... ok [INFO] [stdout] test utils::tests::test_prescan ... ok [INFO] [stdout] test utils::tests::test_scan ... ok [INFO] [stdout] test utils::text::tests::test_print_sequence ... ok [INFO] [stdout] test utils::text::tests::test_trim_newline_from_string ... ok [INFO] [stdout] test utils::interval::tests::negative_width_range - should panic ... ok [INFO] [stdout] test stats::pairhmm::homopolypairhmm::tests::test_banded ... ok [INFO] [stdout] test seq_analysis::gc::tests::test_gc_content_large ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_sampled_matches ... ok [INFO] [stdout] test data_structures::suffix_array::tests::test_sorts_lexically ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- io::fastx::tests::test_get_kind_file stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fastx::tests::test_get_kind_file' panicked at src/io/fastx.rs:868:61: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x594d1d2336d2 - std::backtrace_rs::backtrace::libunwind::trace::hd39b1f53d3cf9745 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x594d1d2336d2 - std::backtrace_rs::backtrace::trace_unsynchronized::he91d9a75d4e3972b [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x594d1d2336d2 - std::sys::backtrace::_print_fmt::hca46938f8c6e22cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x594d1d2336d2 - ::fmt::ha499add612cccf8e [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x594d1d25c983 - core::fmt::rt::Argument::fmt::hd21145b75a833b7a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x594d1d25c983 - core::fmt::write::hb10c956f5235c8a4 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/mod.rs:1465:25 [INFO] [stdout] 6: 0x594d1d230053 - std::io::default_write_fmt::hdb7615052be2ba4d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x594d1d230053 - std::io::Write::write_fmt::he1bcd251ec6e4153 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x594d1d233522 - std::sys::backtrace::BacktraceLock::print::hb47c770ef659fd10 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x594d1d234cfc - std::panicking::default_hook::{{closure}}::hdda8afb9d457a22c [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x594d1d234b52 - std::panicking::default_hook::h7c46b44874fe5c9a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x594d1d1106b4 - as core::ops::function::Fn>::call::h178a5fcedee41e2f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 12: 0x594d1d1106b4 - test::test_main_with_exit_callback::{{closure}}::h951a41e0149d6d5d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x594d1d2357db - as core::ops::function::Fn>::call::h13602080f5b63276 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 14: 0x594d1d2357db - std::panicking::rust_panic_with_hook::ha6cb99ed099eb1c5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x594d1d2354aa - std::panicking::begin_panic_handler::{{closure}}::he11808bc797ee921 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x594d1d233bd9 - std::sys::backtrace::__rust_end_short_backtrace::h9418807cb7346258 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x594d1d23513d - __rustc[18fb429eef004894]::rust_begin_unwind [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x594d1d25a3b0 - core::panicking::panic_fmt::hd890aeb12c3a3fc3 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x594d1d25a756 - core::result::unwrap_failed::h31c9775ec1a50121 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x594d1cfc3806 - core::result::Result::unwrap::h2ef1b862f8f7b568 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x594d1cfc3806 - bio::io::fastx::tests::test_get_kind_file::h2aa055901c740aa7 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:868:61 [INFO] [stdout] 22: 0x594d1cf81af9 - bio::io::fastx::tests::test_get_kind_file::{{closure}}::h2dd7ae02f0496dad [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:867:28 [INFO] [stdout] 23: 0x594d1cf81af9 - core::ops::function::FnOnce::call_once::h42cd21e7b483a0fa [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x594d1d115e3b - core::ops::function::FnOnce::call_once::h2869fb5b0a2b0bdc [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x594d1d115e3b - test::__rust_begin_short_backtrace::h7dd7142bd62fa711 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x594d1d11502e - test::run_test_in_process::{{closure}}::h43a753f038d36b3f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x594d1d11502e - as core::ops::function::FnOnce<()>>::call_once::h0ca95dd3e12d1e16 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x594d1d11502e - std::panicking::catch_unwind::do_call::he308587d70ac34ba [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x594d1d11502e - std::panicking::catch_unwind::h30dcba31973e8fb0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x594d1d11502e - std::panic::catch_unwind::hfb68364e5621fbee [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x594d1d11502e - test::run_test_in_process::hcdcc2977903b998a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x594d1d11502e - test::run_test::{{closure}}::h544a6550958c5d14 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x594d1d0d8ba4 - test::run_test::{{closure}}::hb172e48ebe2b92c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x594d1d0d8ba4 - std::sys::backtrace::__rust_begin_short_backtrace::h7e79d8706638bea0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc4a275f1e71b8ab0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x594d1d0dc57a - as core::ops::function::FnOnce<()>>::call_once::h01ed0d242df78cfd [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x594d1d0dc57a - std::panicking::catch_unwind::do_call::h052f373fb905fee0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x594d1d0dc57a - std::panicking::catch_unwind::hb425d20c8ffb09c8 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x594d1d0dc57a - std::panic::catch_unwind::ha0d5dfbf18fdeda5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbe79182bd37949c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x594d1d0dc57a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hc096c4a06972fde5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h47377e27fb938a26 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 43: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h72f1fe5d095abf57 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 44: 0x594d1d238b37 - std::sys::pal::unix::thread::Thread::new::thread_start::h0a4d8e1b9c0d38cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] 45: 0x7f461a0f4aa4 - [INFO] [stdout] 46: 0x7f461a181a34 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- io::fasta::tests::test_write_record stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fasta::tests::test_write_record' panicked at src/io/fasta.rs:1841:43: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x594d1d2336d2 - std::backtrace_rs::backtrace::libunwind::trace::hd39b1f53d3cf9745 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x594d1d2336d2 - std::backtrace_rs::backtrace::trace_unsynchronized::he91d9a75d4e3972b [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x594d1d2336d2 - std::sys::backtrace::_print_fmt::hca46938f8c6e22cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x594d1d2336d2 - ::fmt::ha499add612cccf8e [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x594d1d25c983 - core::fmt::rt::Argument::fmt::hd21145b75a833b7a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x594d1d25c983 - core::fmt::write::hb10c956f5235c8a4 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/mod.rs:1465:25 [INFO] [stdout] 6: 0x594d1d230053 - std::io::default_write_fmt::hdb7615052be2ba4d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x594d1d230053 - std::io::Write::write_fmt::he1bcd251ec6e4153 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x594d1d233522 - std::sys::backtrace::BacktraceLock::print::hb47c770ef659fd10 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x594d1d234cfc - std::panicking::default_hook::{{closure}}::hdda8afb9d457a22c [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x594d1d234b52 - std::panicking::default_hook::h7c46b44874fe5c9a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x594d1d1106b4 - as core::ops::function::Fn>::call::h178a5fcedee41e2f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 12: 0x594d1d1106b4 - test::test_main_with_exit_callback::{{closure}}::h951a41e0149d6d5d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x594d1d2357db - as core::ops::function::Fn>::call::h13602080f5b63276 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 14: 0x594d1d2357db - std::panicking::rust_panic_with_hook::ha6cb99ed099eb1c5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x594d1d2354aa - std::panicking::begin_panic_handler::{{closure}}::he11808bc797ee921 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x594d1d233bd9 - std::sys::backtrace::__rust_end_short_backtrace::h9418807cb7346258 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x594d1d23513d - __rustc[18fb429eef004894]::rust_begin_unwind [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x594d1d25a3b0 - core::panicking::panic_fmt::hd890aeb12c3a3fc3 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x594d1d25a756 - core::result::unwrap_failed::h31c9775ec1a50121 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x594d1cfb7e86 - core::result::Result::unwrap::h2ef1b862f8f7b568 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x594d1cfb7e86 - bio::io::fasta::tests::test_write_record::h6882f3098b4c9cf9 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fasta.rs:1841:43 [INFO] [stdout] 22: 0x594d1cf81939 - bio::io::fasta::tests::test_write_record::{{closure}}::hc0dd14c5ec48214b [INFO] [stdout] at /opt/rustwide/workdir/src/io/fasta.rs:1839:27 [INFO] [stdout] 23: 0x594d1cf81939 - core::ops::function::FnOnce::call_once::h3ba1696a6a97bc2c [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x594d1d115e3b - core::ops::function::FnOnce::call_once::h2869fb5b0a2b0bdc [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x594d1d115e3b - test::__rust_begin_short_backtrace::h7dd7142bd62fa711 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x594d1d11502e - test::run_test_in_process::{{closure}}::h43a753f038d36b3f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x594d1d11502e - as core::ops::function::FnOnce<()>>::call_once::h0ca95dd3e12d1e16 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x594d1d11502e - std::panicking::catch_unwind::do_call::he308587d70ac34ba [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x594d1d11502e - std::panicking::catch_unwind::h30dcba31973e8fb0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x594d1d11502e - std::panic::catch_unwind::hfb68364e5621fbee [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x594d1d11502e - test::run_test_in_process::hcdcc2977903b998a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x594d1d11502e - test::run_test::{{closure}}::h544a6550958c5d14 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x594d1d0d8ba4 - test::run_test::{{closure}}::hb172e48ebe2b92c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x594d1d0d8ba4 - std::sys::backtrace::__rust_begin_short_backtrace::h7e79d8706638bea0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc4a275f1e71b8ab0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x594d1d0dc57a - as core::ops::function::FnOnce<()>>::call_once::h01ed0d242df78cfd [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x594d1d0dc57a - std::panicking::catch_unwind::do_call::h052f373fb905fee0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x594d1d0dc57a - std::panicking::catch_unwind::hb425d20c8ffb09c8 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x594d1d0dc57a - std::panic::catch_unwind::ha0d5dfbf18fdeda5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbe79182bd37949c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x594d1d0dc57a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hc096c4a06972fde5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h47377e27fb938a26 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 43: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h72f1fe5d095abf57 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 44: 0x594d1d238b37 - std::sys::pal::unix::thread::Thread::new::thread_start::h0a4d8e1b9c0d38cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] 45: 0x7f461a0f4aa4 - [INFO] [stdout] 46: 0x7f461a181a34 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- io::fastq::tests::test_write_record stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fastq::tests::test_write_record' panicked at src/io/fastq.rs:964:43: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x594d1d2336d2 - std::backtrace_rs::backtrace::libunwind::trace::hd39b1f53d3cf9745 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x594d1d2336d2 - std::backtrace_rs::backtrace::trace_unsynchronized::he91d9a75d4e3972b [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x594d1d2336d2 - std::sys::backtrace::_print_fmt::hca46938f8c6e22cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x594d1d2336d2 - ::fmt::ha499add612cccf8e [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x594d1d25c983 - core::fmt::rt::Argument::fmt::hd21145b75a833b7a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x594d1d25c983 - core::fmt::write::hb10c956f5235c8a4 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/mod.rs:1465:25 [INFO] [stdout] 6: 0x594d1d230053 - std::io::default_write_fmt::hdb7615052be2ba4d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x594d1d230053 - std::io::Write::write_fmt::he1bcd251ec6e4153 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x594d1d233522 - std::sys::backtrace::BacktraceLock::print::hb47c770ef659fd10 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x594d1d234cfc - std::panicking::default_hook::{{closure}}::hdda8afb9d457a22c [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x594d1d234b52 - std::panicking::default_hook::h7c46b44874fe5c9a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x594d1d1106b4 - as core::ops::function::Fn>::call::h178a5fcedee41e2f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 12: 0x594d1d1106b4 - test::test_main_with_exit_callback::{{closure}}::h951a41e0149d6d5d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x594d1d2357db - as core::ops::function::Fn>::call::h13602080f5b63276 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 14: 0x594d1d2357db - std::panicking::rust_panic_with_hook::ha6cb99ed099eb1c5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x594d1d2354aa - std::panicking::begin_panic_handler::{{closure}}::he11808bc797ee921 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x594d1d233bd9 - std::sys::backtrace::__rust_end_short_backtrace::h9418807cb7346258 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x594d1d23513d - __rustc[18fb429eef004894]::rust_begin_unwind [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x594d1d25a3b0 - core::panicking::panic_fmt::hd890aeb12c3a3fc3 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x594d1d25a756 - core::result::unwrap_failed::h31c9775ec1a50121 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x594d1cfbedb3 - core::result::Result::unwrap::h2ef1b862f8f7b568 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x594d1cfbedb3 - bio::io::fastq::tests::test_write_record::hd03d4481926892b7 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastq.rs:964:43 [INFO] [stdout] 22: 0x594d1cf82299 - bio::io::fastq::tests::test_write_record::{{closure}}::h2198cf130cb3e344 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastq.rs:962:27 [INFO] [stdout] 23: 0x594d1cf82299 - core::ops::function::FnOnce::call_once::h5caa6b617c7f09f0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x594d1d115e3b - core::ops::function::FnOnce::call_once::h2869fb5b0a2b0bdc [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x594d1d115e3b - test::__rust_begin_short_backtrace::h7dd7142bd62fa711 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x594d1d11502e - test::run_test_in_process::{{closure}}::h43a753f038d36b3f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x594d1d11502e - as core::ops::function::FnOnce<()>>::call_once::h0ca95dd3e12d1e16 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x594d1d11502e - std::panicking::catch_unwind::do_call::he308587d70ac34ba [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x594d1d11502e - std::panicking::catch_unwind::h30dcba31973e8fb0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x594d1d11502e - std::panic::catch_unwind::hfb68364e5621fbee [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x594d1d11502e - test::run_test_in_process::hcdcc2977903b998a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x594d1d11502e - test::run_test::{{closure}}::h544a6550958c5d14 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x594d1d0d8ba4 - test::run_test::{{closure}}::hb172e48ebe2b92c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x594d1d0d8ba4 - std::sys::backtrace::__rust_begin_short_backtrace::h7e79d8706638bea0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc4a275f1e71b8ab0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x594d1d0dc57a - as core::ops::function::FnOnce<()>>::call_once::h01ed0d242df78cfd [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x594d1d0dc57a - std::panicking::catch_unwind::do_call::h052f373fb905fee0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x594d1d0dc57a - std::panicking::catch_unwind::hb425d20c8ffb09c8 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x594d1d0dc57a - std::panic::catch_unwind::ha0d5dfbf18fdeda5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbe79182bd37949c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x594d1d0dc57a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hc096c4a06972fde5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h47377e27fb938a26 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 43: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h72f1fe5d095abf57 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 44: 0x594d1d238b37 - std::sys::pal::unix::thread::Thread::new::thread_start::h0a4d8e1b9c0d38cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] 45: 0x7f461a0f4aa4 - [INFO] [stdout] 46: 0x7f461a181a34 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- io::fastx::tests::test_either_records_from_file stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'io::fastx::tests::test_either_records_from_file' panicked at src/io/fastx.rs:781:72: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x594d1d2336d2 - std::backtrace_rs::backtrace::libunwind::trace::hd39b1f53d3cf9745 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x594d1d2336d2 - std::backtrace_rs::backtrace::trace_unsynchronized::he91d9a75d4e3972b [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x594d1d2336d2 - std::sys::backtrace::_print_fmt::hca46938f8c6e22cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x594d1d2336d2 - ::fmt::ha499add612cccf8e [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x594d1d25c983 - core::fmt::rt::Argument::fmt::hd21145b75a833b7a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x594d1d25c983 - core::fmt::write::hb10c956f5235c8a4 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/mod.rs:1465:25 [INFO] [stdout] 6: 0x594d1d230053 - std::io::default_write_fmt::hdb7615052be2ba4d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x594d1d230053 - std::io::Write::write_fmt::he1bcd251ec6e4153 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x594d1d233522 - std::sys::backtrace::BacktraceLock::print::hb47c770ef659fd10 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x594d1d234cfc - std::panicking::default_hook::{{closure}}::hdda8afb9d457a22c [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x594d1d234b52 - std::panicking::default_hook::h7c46b44874fe5c9a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x594d1d1106b4 - as core::ops::function::Fn>::call::h178a5fcedee41e2f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 12: 0x594d1d1106b4 - test::test_main_with_exit_callback::{{closure}}::h951a41e0149d6d5d [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x594d1d2357db - as core::ops::function::Fn>::call::h13602080f5b63276 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 14: 0x594d1d2357db - std::panicking::rust_panic_with_hook::ha6cb99ed099eb1c5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x594d1d2354aa - std::panicking::begin_panic_handler::{{closure}}::he11808bc797ee921 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x594d1d233bd9 - std::sys::backtrace::__rust_end_short_backtrace::h9418807cb7346258 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x594d1d23513d - __rustc[18fb429eef004894]::rust_begin_unwind [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x594d1d25a3b0 - core::panicking::panic_fmt::hd890aeb12c3a3fc3 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x594d1d25a756 - core::result::unwrap_failed::h31c9775ec1a50121 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1761:5 [INFO] [stdout] 20: 0x594d1cfc2872 - core::result::Result::unwrap::h2ef1b862f8f7b568 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1167:23 [INFO] [stdout] 21: 0x594d1cfc2872 - bio::io::fastx::tests::test_either_records_from_file::h650ae632be2d4c35 [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:781:72 [INFO] [stdout] 22: 0x594d1cf829d9 - bio::io::fastx::tests::test_either_records_from_file::{{closure}}::h9d52289fbbf219ce [INFO] [stdout] at /opt/rustwide/workdir/src/io/fastx.rs:780:39 [INFO] [stdout] 23: 0x594d1cf829d9 - core::ops::function::FnOnce::call_once::h71d2f68c3299bba1 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x594d1d115e3b - core::ops::function::FnOnce::call_once::h2869fb5b0a2b0bdc [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x594d1d115e3b - test::__rust_begin_short_backtrace::h7dd7142bd62fa711 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x594d1d11502e - test::run_test_in_process::{{closure}}::h43a753f038d36b3f [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x594d1d11502e - as core::ops::function::FnOnce<()>>::call_once::h0ca95dd3e12d1e16 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x594d1d11502e - std::panicking::catch_unwind::do_call::he308587d70ac34ba [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x594d1d11502e - std::panicking::catch_unwind::h30dcba31973e8fb0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x594d1d11502e - std::panic::catch_unwind::hfb68364e5621fbee [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x594d1d11502e - test::run_test_in_process::hcdcc2977903b998a [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x594d1d11502e - test::run_test::{{closure}}::h544a6550958c5d14 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x594d1d0d8ba4 - test::run_test::{{closure}}::hb172e48ebe2b92c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x594d1d0d8ba4 - std::sys::backtrace::__rust_begin_short_backtrace::h7e79d8706638bea0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc4a275f1e71b8ab0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x594d1d0dc57a - as core::ops::function::FnOnce<()>>::call_once::h01ed0d242df78cfd [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x594d1d0dc57a - std::panicking::catch_unwind::do_call::h052f373fb905fee0 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x594d1d0dc57a - std::panicking::catch_unwind::hb425d20c8ffb09c8 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x594d1d0dc57a - std::panic::catch_unwind::ha0d5dfbf18fdeda5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x594d1d0dc57a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbe79182bd37949c7 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x594d1d0dc57a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hc096c4a06972fde5 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h47377e27fb938a26 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 43: 0x594d1d238b37 - as core::ops::function::FnOnce>::call_once::h72f1fe5d095abf57 [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9 [INFO] [stdout] 44: 0x594d1d238b37 - std::sys::pal::unix::thread::Thread::new::thread_start::h0a4d8e1b9c0d38cf [INFO] [stdout] at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] 45: 0x7f461a0f4aa4 - [INFO] [stdout] 46: 0x7f461a181a34 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] io::fasta::tests::test_write_record [INFO] [stdout] io::fastq::tests::test_write_record [INFO] [stdout] io::fastx::tests::test_either_records_from_file [INFO] [stdout] io::fastx::tests::test_get_kind_file [INFO] [stdout] [INFO] [stdout] test result: FAILED. 459 passed; 4 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.52s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "0cd06b34c2241e0c1d5b5ca51aaa287b82ed786b261c8b4fa7cd1eedf0fe4917", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0cd06b34c2241e0c1d5b5ca51aaa287b82ed786b261c8b4fa7cd1eedf0fe4917", kill_on_drop: false }` [INFO] [stdout] 0cd06b34c2241e0c1d5b5ca51aaa287b82ed786b261c8b4fa7cd1eedf0fe4917