[INFO] cloning repository https://github.com/Inuen/biogenie
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Inuen/biogenie" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FInuen%2Fbiogenie", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FInuen%2Fbiogenie'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] d259c3c3e880d281a06dc512d414a0bab9d0dc34
[INFO] testing Inuen/biogenie/d259c3c3e880d281a06dc512d414a0bab9d0dc34 against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FInuen%2Fbiogenie" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Inuen/biogenie
[INFO] finished tweaking git repo https://github.com/Inuen/biogenie
[INFO] tweaked toml for git repo https://github.com/Inuen/biogenie written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Inuen/biogenie on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Inuen/biogenie already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded nucgen v0.1.2
[INFO] [stderr]   Downloaded timeit v0.1.2
[INFO] [stderr]   Downloaded libdeflater v0.12.0
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[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded enum-map-derive v0.17.0
[INFO] [stderr]   Downloaded enum-map v2.7.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded ordered-float v5.0.0
[INFO] [stderr]   Downloaded core_affinity v0.8.3
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded csv-core v0.1.12
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded clap_derive v4.5.28
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded clap v4.5.31
[INFO] [stderr]   Downloaded serde_derive v1.0.218
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[INFO] [stderr]   Downloaded wide v0.7.32
[INFO] [stderr]   Downloaded libdeflate-sys v0.12.0
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded syn v2.0.99
[INFO] [stderr]   Downloaded clap_builder v4.5.31
[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded bitap v0.2.0
[INFO] [stderr]   Downloaded libc v0.2.170
[INFO] [stderr]   Downloaded libz-sys v1.1.21
[INFO] [stderr]   Downloaded gzp v0.11.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e08ebf19f4a6b6557fb5c03648c0209d0f1054e16d0977373f16776e44556750
[INFO] running `Command { std: "docker" "start" "-a" "e08ebf19f4a6b6557fb5c03648c0209d0f1054e16d0977373f16776e44556750", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e08ebf19f4a6b6557fb5c03648c0209d0f1054e16d0977373f16776e44556750", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e08ebf19f4a6b6557fb5c03648c0209d0f1054e16d0977373f16776e44556750", kill_on_drop: false }`
[INFO] [stdout] e08ebf19f4a6b6557fb5c03648c0209d0f1054e16d0977373f16776e44556750
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 54728e78db0bc0293c15ef287a12d29fd45fb080b8a26c5665be84b7bda26ebf
[INFO] running `Command { std: "docker" "start" "-a" "54728e78db0bc0293c15ef287a12d29fd45fb080b8a26c5665be84b7bda26ebf", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.170
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling serde v1.0.218
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling quote v1.0.39
[INFO] [stderr]    Compiling cc v1.2.16
[INFO] [stderr]    Compiling getrandom v0.3.1
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling syn v2.0.99
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling zerocopy v0.8.23
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling rand_core v0.9.3
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[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling futures-sink v0.3.31
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[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling futures-core v0.3.31
[INFO] [stderr]    Compiling indexmap v2.7.1
[INFO] [stderr]    Compiling core_affinity v0.8.3
[INFO] [stderr]    Compiling clap_builder v4.5.31
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling regex v1.11.1
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[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling time v0.1.45
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling unchecked-index v0.2.2
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling twoway v0.2.2
[INFO] [stderr]    Compiling timeit v0.1.2
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling bitap v0.2.0
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.218
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling pin-project-internal v1.1.10
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling flate2 v1.1.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.28
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling rand v0.9.0
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling pin-project v1.1.10
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.31
[INFO] [stderr]    Compiling nucgen v0.1.2
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling biogenie v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 5m 58s
[INFO] running `Command { std: "docker" "inspect" "54728e78db0bc0293c15ef287a12d29fd45fb080b8a26c5665be84b7bda26ebf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "54728e78db0bc0293c15ef287a12d29fd45fb080b8a26c5665be84b7bda26ebf", kill_on_drop: false }`
[INFO] [stdout] 54728e78db0bc0293c15ef287a12d29fd45fb080b8a26c5665be84b7bda26ebf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9f1ff559060aaa00c8ded0dcc833254377b5810c33becd6d833379f3add567a1
[INFO] running `Command { std: "docker" "start" "-a" "9f1ff559060aaa00c8ded0dcc833254377b5810c33becd6d833379f3add567a1", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.218
[INFO] [stderr]    Compiling half v2.5.0
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling is-terminal v0.4.16
[INFO] [stderr]    Compiling once_cell v1.20.3
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling biogenie v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 21s
[INFO] running `Command { std: "docker" "inspect" "9f1ff559060aaa00c8ded0dcc833254377b5810c33becd6d833379f3add567a1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9f1ff559060aaa00c8ded0dcc833254377b5810c33becd6d833379f3add567a1", kill_on_drop: false }`
[INFO] [stdout] 9f1ff559060aaa00c8ded0dcc833254377b5810c33becd6d833379f3add567a1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e8bbad1a833e852e20e9e225233143e889bd5f4e9c239c274a89fcf478dabada
[INFO] running `Command { std: "docker" "start" "-a" "e8bbad1a833e852e20e9e225233143e889bd5f4e9c239c274a89fcf478dabada", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.31s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/biogenie-17fff77bf6b56f2f)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/biogenie-42b7122821600d99)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests biogenie
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "e8bbad1a833e852e20e9e225233143e889bd5f4e9c239c274a89fcf478dabada", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8bbad1a833e852e20e9e225233143e889bd5f4e9c239c274a89fcf478dabada", kill_on_drop: false }`
[INFO] [stdout] e8bbad1a833e852e20e9e225233143e889bd5f4e9c239c274a89fcf478dabada