[INFO] cloning repository https://github.com/ARU-life-sciences/gfa_recomb
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/gfa_recomb" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fgfa_recomb", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fgfa_recomb'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fe5fb3959c9710a376b8c65320ca4050742e251c
[INFO] testing ARU-life-sciences/gfa_recomb against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fgfa_recomb" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/gfa_recomb
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/gfa_recomb
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/gfa_recomb written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/gfa_recomb on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/gfa_recomb already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded anyhow v1.0.97
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.7
[INFO] [stderr]   Downloaded bytemuck_derive v1.9.2
[INFO] [stderr]   Downloaded once_cell v1.21.1
[INFO] [stderr]   Downloaded clap v4.5.32
[INFO] [stderr]   Downloaded nom v5.1.3
[INFO] [stderr]   Downloaded clap_lex v0.7.4
[INFO] [stderr]   Downloaded clap_builder v4.5.32
[INFO] [stderr]   Downloaded bstr v0.2.17
[INFO] [stderr]   Downloaded lexical-core v0.7.6
[INFO] [stderr]   Downloaded gfa v0.10.1
[INFO] [stderr]   Downloaded bstr v1.11.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9e5290b71da03334ede674eec777bd14e3f89cfa23d52bcece57500ea426f7c7
[INFO] running `Command { std: "docker" "start" "-a" "9e5290b71da03334ede674eec777bd14e3f89cfa23d52bcece57500ea426f7c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9e5290b71da03334ede674eec777bd14e3f89cfa23d52bcece57500ea426f7c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9e5290b71da03334ede674eec777bd14e3f89cfa23d52bcece57500ea426f7c7", kill_on_drop: false }`
[INFO] [stdout] 9e5290b71da03334ede674eec777bd14e3f89cfa23d52bcece57500ea426f7c7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fd70fbe87675f84ae378372d19df63e1c338a6cb4ded4f500064385acffda442
[INFO] running `Command { std: "docker" "start" "-a" "fd70fbe87675f84ae378372d19df63e1c338a6cb4ded4f500064385acffda442", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling anyhow v1.0.97
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling clap_builder v4.5.32
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling memmap v0.7.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling clap v4.5.32
[INFO] [stderr]    Compiling bytemuck_derive v1.9.2
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling bstr v1.11.3
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling gfa v0.10.1
[INFO] [stderr]    Compiling gfa_recomb v0.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 20s
[INFO] running `Command { std: "docker" "inspect" "fd70fbe87675f84ae378372d19df63e1c338a6cb4ded4f500064385acffda442", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd70fbe87675f84ae378372d19df63e1c338a6cb4ded4f500064385acffda442", kill_on_drop: false }`
[INFO] [stdout] fd70fbe87675f84ae378372d19df63e1c338a6cb4ded4f500064385acffda442
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 75221abe8a32930892816a62a64f8001c6df89dc155aa6e910635cd1e6cf2cfb
[INFO] running `Command { std: "docker" "start" "-a" "75221abe8a32930892816a62a64f8001c6df89dc155aa6e910635cd1e6cf2cfb", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfa_recomb v0.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 2.06s
[INFO] running `Command { std: "docker" "inspect" "75221abe8a32930892816a62a64f8001c6df89dc155aa6e910635cd1e6cf2cfb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "75221abe8a32930892816a62a64f8001c6df89dc155aa6e910635cd1e6cf2cfb", kill_on_drop: false }`
[INFO] [stdout] 75221abe8a32930892816a62a64f8001c6df89dc155aa6e910635cd1e6cf2cfb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 5e51d2439ac0562d2568eea3d54fd407ab9cab3faed23d6cc4ab51b80262d966
[INFO] running `Command { std: "docker" "start" "-a" "5e51d2439ac0562d2568eea3d54fd407ab9cab3faed23d6cc4ab51b80262d966", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gfa_recomb-2f5e15554d486620)
[INFO] [stdout] 
[INFO] [stdout] running 14 tests
[INFO] [stdout] test gaf::tests::test_compute_rci_balanced ... ok
[INFO] [stdout] test gaf::tests::test_compute_rci_empty ... ok
[INFO] [stdout] test gaf::tests::test_compute_rci_unbalanced ... ok
[INFO] [stdout] test gaf::tests::test_is_reverse_2 ... ok
[INFO] [stdout] test gaf::tests::test_path_parse ... ok
[INFO] [stdout] test gaf::tests::test_split_repeats_multiple ... ok
[INFO] [stdout] test gaf::tests::test_split_repeats ... ok
[INFO] [stdout] test gaf::tests::test_split_into_repeats_merges_by_repeat_id ... ok
[INFO] [stdout] 
[INFO] [stdout] repeat_node	path_count	entropy
[INFO] [stdout] u66	3	1.522
[INFO] [stdout] 
[INFO] [stdout] Mean entropy: 1.522
[INFO] [stdout] Total entropy: 1.522
[INFO] [stdout] test gaf::tests::test_compute_path_entropy_single_node ... ok
[INFO] [stdout] test gaf::tests::test_extract_middle_segment_valid ... ok
[INFO] [stdout] test gaf::tests::test_extract_repeat_info_mismatch ... ok
[INFO] [stdout] test gaf::tests::test_extract_repeat_info_valid_pair ... ok
[INFO] [stdout] test gaf::tests::test_extract_middle_segment_invalid ... ok
[INFO] [stdout] test gaf::tests::test_is_reverse ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "5e51d2439ac0562d2568eea3d54fd407ab9cab3faed23d6cc4ab51b80262d966", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e51d2439ac0562d2568eea3d54fd407ab9cab3faed23d6cc4ab51b80262d966", kill_on_drop: false }`
[INFO] [stdout] 5e51d2439ac0562d2568eea3d54fd407ab9cab3faed23d6cc4ab51b80262d966
