[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b463b611c347c1f23d68f2061296df531711728f
[INFO] testing ARU-life-sciences/extract_nhmmer_tblout against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded noodles-fasta v0.37.0
[INFO] [stderr]   Downloaded hmm_tblout v0.2.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.29.0
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded proc-macro2 v1.0.82
[INFO] [stderr]   Downloaded syn v2.0.61
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8a103df0af07d21fcc7251155ad7a75abdce0e729f94542cc12d4c44f8be1d3c
[INFO] running `Command { std: "docker" "start" "-a" "8a103df0af07d21fcc7251155ad7a75abdce0e729f94542cc12d4c44f8be1d3c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8a103df0af07d21fcc7251155ad7a75abdce0e729f94542cc12d4c44f8be1d3c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8a103df0af07d21fcc7251155ad7a75abdce0e729f94542cc12d4c44f8be1d3c", kill_on_drop: false }`
[INFO] [stdout] 8a103df0af07d21fcc7251155ad7a75abdce0e729f94542cc12d4c44f8be1d3c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fb076e71aa161678be953f207995aa3054a4f5177a535afe2ce90706bde66e4e
[INFO] running `Command { std: "docker" "start" "-a" "fb076e71aa161678be953f207995aa3054a4f5177a535afe2ce90706bde66e4e", kill_on_drop: false }`
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling anstyle v1.0.7
[INFO] [stderr]    Compiling colorchoice v1.0.1
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling anstyle-query v1.0.3
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling fastrand v2.1.0
[INFO] [stderr]    Compiling hmm_tblout v0.2.1
[INFO] [stderr]    Compiling anstyle-parse v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling anstream v0.6.14
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling noodles-bgzf v0.29.0
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-fasta v0.37.0
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 31.20s
[INFO] running `Command { std: "docker" "inspect" "fb076e71aa161678be953f207995aa3054a4f5177a535afe2ce90706bde66e4e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fb076e71aa161678be953f207995aa3054a4f5177a535afe2ce90706bde66e4e", kill_on_drop: false }`
[INFO] [stdout] fb076e71aa161678be953f207995aa3054a4f5177a535afe2ce90706bde66e4e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 87a3093942a86af24c10c9eb18f4809b994d2b0e0f8508c110f538a69dd762d9
[INFO] running `Command { std: "docker" "start" "-a" "87a3093942a86af24c10c9eb18f4809b994d2b0e0f8508c110f538a69dd762d9", kill_on_drop: false }`
[INFO] [stderr]    Compiling extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.46s
[INFO] running `Command { std: "docker" "inspect" "87a3093942a86af24c10c9eb18f4809b994d2b0e0f8508c110f538a69dd762d9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "87a3093942a86af24c10c9eb18f4809b994d2b0e0f8508c110f538a69dd762d9", kill_on_drop: false }`
[INFO] [stdout] 87a3093942a86af24c10c9eb18f4809b994d2b0e0f8508c110f538a69dd762d9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 760372b035359f011b81976930eb43f68aff6009cb67a31728986b2b91bb357d
[INFO] running `Command { std: "docker" "start" "-a" "760372b035359f011b81976930eb43f68aff6009cb67a31728986b2b91bb357d", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/extract_nhmmer_tblout-3b459a8830a0559e)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "760372b035359f011b81976930eb43f68aff6009cb67a31728986b2b91bb357d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "760372b035359f011b81976930eb43f68aff6009cb67a31728986b2b91bb357d", kill_on_drop: false }`
[INFO] [stdout] 760372b035359f011b81976930eb43f68aff6009cb67a31728986b2b91bb357d
