[INFO] cloning repository https://github.com/10XGenomics/vartrix
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/vartrix" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3dd49885e9c2cdce72b1c0e58e125a5285a184bc
[INFO] testing 10XGenomics/vartrix against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fvartrix" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] finished tweaking git repo https://github.com/10XGenomics/vartrix
[INFO] tweaked toml for git repo https://github.com/10XGenomics/vartrix written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/10XGenomics/vartrix on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/10XGenomics/vartrix already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 927ae21c3dbb1bb3fee7ab0e6b4e68365a914eb21198d8cb54be2c1ccaab5b09
[INFO] running `Command { std: "docker" "start" "-a" "927ae21c3dbb1bb3fee7ab0e6b4e68365a914eb21198d8cb54be2c1ccaab5b09", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "927ae21c3dbb1bb3fee7ab0e6b4e68365a914eb21198d8cb54be2c1ccaab5b09", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "927ae21c3dbb1bb3fee7ab0e6b4e68365a914eb21198d8cb54be2c1ccaab5b09", kill_on_drop: false }`
[INFO] [stdout] 927ae21c3dbb1bb3fee7ab0e6b4e68365a914eb21198d8cb54be2c1ccaab5b09
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8c36cee2099116adb9982eab9dd7dae4f432237822bae04c0240b8eab3a0d92b
[INFO] running `Command { std: "docker" "start" "-a" "8c36cee2099116adb9982eab9dd7dae4f432237822bae04c0240b8eab3a0d92b", kill_on_drop: false }`
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[INFO] [stderr]    Compiling toml v0.7.6
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[INFO] [stderr]    Compiling rust-htslib v0.36.0
[INFO] [stderr]    Compiling vartrix v1.1.22 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]    --> src/main.rs:139:5
[INFO] [stdout]     |
[INFO] [stdout] 139 |     setup_panic!(); // pretty panics for users
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]     = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]    --> src/main.rs:139:5
[INFO] [stdout]     |
[INFO] [stdout] 139 |     setup_panic!(); // pretty panics for users
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6m 05s
[INFO] running `Command { std: "docker" "inspect" "8c36cee2099116adb9982eab9dd7dae4f432237822bae04c0240b8eab3a0d92b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8c36cee2099116adb9982eab9dd7dae4f432237822bae04c0240b8eab3a0d92b", kill_on_drop: false }`
[INFO] [stdout] 8c36cee2099116adb9982eab9dd7dae4f432237822bae04c0240b8eab3a0d92b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 301abc3477c4745c8e9c841b4e2e8456f9f39591980d482c0fcd94d5e5fbdc2b
[INFO] running `Command { std: "docker" "start" "-a" "301abc3477c4745c8e9c841b4e2e8456f9f39591980d482c0fcd94d5e5fbdc2b", kill_on_drop: false }`
[INFO] [stderr]    Compiling vartrix v1.1.22 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]    --> src/main.rs:139:5
[INFO] [stdout]     |
[INFO] [stdout] 139 |     setup_panic!(); // pretty panics for users
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]     = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]    --> src/main.rs:139:5
[INFO] [stdout]     |
[INFO] [stdout] 139 |     setup_panic!(); // pretty panics for users
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 14.07s
[INFO] running `Command { std: "docker" "inspect" "301abc3477c4745c8e9c841b4e2e8456f9f39591980d482c0fcd94d5e5fbdc2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "301abc3477c4745c8e9c841b4e2e8456f9f39591980d482c0fcd94d5e5fbdc2b", kill_on_drop: false }`
[INFO] [stdout] 301abc3477c4745c8e9c841b4e2e8456f9f39591980d482c0fcd94d5e5fbdc2b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2d05edd4ecef0366227a1b5989abbadf179bf409e2ed73274fd02f5e0341f3dc
[INFO] running `Command { std: "docker" "start" "-a" "2d05edd4ecef0366227a1b5989abbadf179bf409e2ed73274fd02f5e0341f3dc", kill_on_drop: false }`
[INFO] [stderr] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stderr]    --> src/main.rs:139:5
[INFO] [stderr]     |
[INFO] [stderr] 139 |     setup_panic!(); // pretty panics for users
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr]     = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stderr]    --> src/main.rs:139:5
[INFO] [stderr]     |
[INFO] [stderr] 139 |     setup_panic!(); // pretty panics for users
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stderr] 
[INFO] [stderr] warning: `vartrix` (bin "vartrix" test) generated 2 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/vartrix-596136a734d03a18)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test tests::test_coverage_matrices ... ok
[INFO] [stdout] test tests::test_coverage_matrices_umi_gzipped_bcs ... ok
[INFO] [stdout] test tests::test_coverage_matrices_umi ... ok
[INFO] [stdout] test tests::test_consensus_matrix ... ok
[INFO] [stdout] test tests::test_frac_matrix ... ok
[INFO] [stderr] 05:34:23 [ERROR] The resulting matrix has a sum of 0. Did you use the --umi flag on data without UMIs?
[INFO] [stdout] test tests::test_coverage_matrices_umi_dna ... ok
[INFO] [stdout] test tests::test_coverage_matrices_dna ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.60s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "2d05edd4ecef0366227a1b5989abbadf179bf409e2ed73274fd02f5e0341f3dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2d05edd4ecef0366227a1b5989abbadf179bf409e2ed73274fd02f5e0341f3dc", kill_on_drop: false }`
[INFO] [stdout] 2d05edd4ecef0366227a1b5989abbadf179bf409e2ed73274fd02f5e0341f3dc
