[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9d9cab8a1475bc7cd34169822620c77bce0d5930
[INFO] testing 10XGenomics/rust-pseudoaligner against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner
[INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde v1.0.147
[INFO] [stderr]   Downloaded crossbeam-deque v0.8.1
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded quote v1.0.18
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded strum v0.23.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bytecount v0.6.3
[INFO] [stderr]   Downloaded wyhash v0.5.0
[INFO] [stderr]   Downloaded bit-set v0.5.2
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.8
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded boomphf v0.6.0
[INFO] [stderr]   Downloaded thiserror-impl v1.0.31
[INFO] [stderr]   Downloaded strum_macros v0.23.1
[INFO] [stderr]   Downloaded rustversion v1.0.6
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded is-terminal v0.4.10
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded tempfile v3.10.0
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded num-complex v0.4.1
[INFO] [stderr]   Downloaded multimap v0.8.3
[INFO] [stderr]   Downloaded num-rational v0.4.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded ordered-float v3.7.0
[INFO] [stderr]   Downloaded docopt v1.1.1
[INFO] [stderr]   Downloaded pretty_env_logger v0.5.0
[INFO] [stderr]   Downloaded proc-macro2 v1.0.39
[INFO] [stderr]   Downloaded unicode-ident v1.0.0
[INFO] [stderr]   Downloaded serde_derive v1.0.147
[INFO] [stderr]   Downloaded thiserror v1.0.31
[INFO] [stderr]   Downloaded wide v0.7.13
[INFO] [stderr]   Downloaded unicode-segmentation v1.9.0
[INFO] [stderr]   Downloaded indexmap v2.2.2
[INFO] [stderr]   Downloaded rayon v1.8.1
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded libm v0.2.2
[INFO] [stderr]   Downloaded bio v1.5.0
[INFO] [stderr]   Downloaded syn v1.0.96
[INFO] [stderr]   Downloaded ndarray v0.15.4
[INFO] [stderr]   Downloaded regex v1.10.3
[INFO] [stderr]   Downloaded regex-automata v0.4.5
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4e1a7b55d478e10b4f9e8ff42b5bd156db6e09a7af08562f3038db323133ca1a
[INFO] running `Command { std: "docker" "start" "-a" "4e1a7b55d478e10b4f9e8ff42b5bd156db6e09a7af08562f3038db323133ca1a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4e1a7b55d478e10b4f9e8ff42b5bd156db6e09a7af08562f3038db323133ca1a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4e1a7b55d478e10b4f9e8ff42b5bd156db6e09a7af08562f3038db323133ca1a", kill_on_drop: false }`
[INFO] [stdout] 4e1a7b55d478e10b4f9e8ff42b5bd156db6e09a7af08562f3038db323133ca1a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2be07bad1fd94585398446e687cd219adbfcff4f76d3b26af7e49d42f247cd5b
[INFO] running `Command { std: "docker" "start" "-a" "2be07bad1fd94585398446e687cd219adbfcff4f76d3b26af7e49d42f247cd5b", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.39
[INFO] [stderr]    Compiling unicode-ident v1.0.0
[INFO] [stderr]    Compiling syn v1.0.96
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling libc v0.2.152
[INFO] [stderr]    Compiling serde_derive v1.0.147
[INFO] [stderr]    Compiling serde v1.0.147
[INFO] [stderr]    Compiling memchr v2.7.1
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.8
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling bytemuck v1.14.0
[INFO] [stderr]    Compiling aho-corasick v1.1.2
[INFO] [stderr]    Compiling safe_arch v0.7.1
[INFO] [stderr]    Compiling quote v1.0.18
[INFO] [stderr]    Compiling getrandom v0.2.6
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling num-complex v0.4.1
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling rustix v0.38.31
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling regex-automata v0.4.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling wide v0.7.13
[INFO] [stderr]    Compiling ryu v1.0.10
[INFO] [stderr]    Compiling hashbrown v0.14.3
[INFO] [stderr]    Compiling unicode-segmentation v1.9.0
[INFO] [stderr]    Compiling log v0.4.20
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling bitflags v2.4.2
[INFO] [stderr]    Compiling paste v1.0.7
[INFO] [stderr]    Compiling regex v1.10.3
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling anyhow v1.0.79
[INFO] [stderr]    Compiling serde_json v1.0.99
[INFO] [stderr]    Compiling smallvec v1.10.0
[INFO] [stderr]    Compiling indexmap v2.2.2
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling rayon v1.8.1
[INFO] [stderr]    Compiling is-terminal v0.4.10
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling wyhash v0.5.0
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling miniz_oxide v0.7.1
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling ndarray v0.15.4
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v3.7.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling strum v0.23.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.3
[INFO] [stderr]    Compiling dashmap v5.5.3
[INFO] [stderr]    Compiling flate2 v1.0.28
[INFO] [stderr]    Compiling pretty_env_logger v0.5.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.31
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling thiserror v1.0.31
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling boomphf v0.6.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling docopt v1.1.1
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52)
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 5m 30s
[INFO] running `Command { std: "docker" "inspect" "2be07bad1fd94585398446e687cd219adbfcff4f76d3b26af7e49d42f247cd5b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2be07bad1fd94585398446e687cd219adbfcff4f76d3b26af7e49d42f247cd5b", kill_on_drop: false }`
[INFO] [stdout] 2be07bad1fd94585398446e687cd219adbfcff4f76d3b26af7e49d42f247cd5b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 24153a29adba37cf89e57b452e9586d2113f2a4777830ffb8c7569ed9f96b36c
[INFO] running `Command { std: "docker" "start" "-a" "24153a29adba37cf89e57b452e9586d2113f2a4777830ffb8c7569ed9f96b36c", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustix v0.38.31
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling rand_xorshift v0.3.0
[INFO] [stderr]    Compiling unarray v0.1.4
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52)
[INFO] [stderr]    Compiling bio v1.5.0
[INFO] [stderr]    Compiling is-terminal v0.4.10
[INFO] [stderr]    Compiling tempfile v3.10.0
[INFO] [stderr]    Compiling env_logger v0.10.2
[INFO] [stderr]    Compiling pretty_env_logger v0.5.0
[INFO] [stderr]    Compiling rusty-fork v0.3.0
[INFO] [stderr]    Compiling proptest v1.4.0
[INFO] [stderr]    Compiling debruijn_mapping v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 15s
[INFO] running `Command { std: "docker" "inspect" "24153a29adba37cf89e57b452e9586d2113f2a4777830ffb8c7569ed9f96b36c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "24153a29adba37cf89e57b452e9586d2113f2a4777830ffb8c7569ed9f96b36c", kill_on_drop: false }`
[INFO] [stdout] 24153a29adba37cf89e57b452e9586d2113f2a4777830ffb8c7569ed9f96b36c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] f51f4e26b3a8af7fe2f6518a59068ae1441ad97737f13794a72db1a09ab02ab8
[INFO] running `Command { std: "docker" "start" "-a" "f51f4e26b3a8af7fe2f6518a59068ae1441ad97737f13794a72db1a09ab02ab8", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.20s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/debruijn_mapping-24eca2883115ccd6)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test pseudoaligner::test::intersect_test ... ok
[INFO] [stdout] test build_index::test::group_by_slices_test ... ok
[INFO] [stdout] test pseudoaligner::test::intersect_prop_test ... ok
[INFO] [stdout] test build_index::test::test_gencode_small_build_64 ... ok
[INFO] [stdout] test build_index::test::test_gencode_small_build_20 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 6.10s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pseudoaligner.rs (/opt/rustwide/target/debug/deps/pseudoaligner-7138df07608d86bb)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests debruijn_mapping
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "f51f4e26b3a8af7fe2f6518a59068ae1441ad97737f13794a72db1a09ab02ab8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f51f4e26b3a8af7fe2f6518a59068ae1441ad97737f13794a72db1a09ab02ab8", kill_on_drop: false }`
[INFO] [stdout] f51f4e26b3a8af7fe2f6518a59068ae1441ad97737f13794a72db1a09ab02ab8
