[INFO] fetching crate fmlrc 0.1.8...
[INFO] testing fmlrc-0.1.8 against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] extracting crate fmlrc 0.1.8 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate fmlrc 0.1.8
[INFO] finished tweaking crates.io crate fmlrc 0.1.8
[INFO] tweaked toml for crates.io crate fmlrc 0.1.8 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate fmlrc 0.1.8 on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fmlrc 0.1.8 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded subprocess v0.2.8
[INFO] [stderr]   Downloaded crc32fast v1.3.1
[INFO] [stderr]   Downloaded bzip2 v0.4.3
[INFO] [stderr]   Downloaded bytecount v0.6.2
[INFO] [stderr]   Downloaded xz2 v0.1.6
[INFO] [stderr]   Downloaded strum v0.18.0
[INFO] [stderr]   Downloaded fixedbitset v0.1.9
[INFO] [stderr]   Downloaded strum_macros v0.18.0
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded strum_macros v0.23.1
[INFO] [stderr]   Downloaded matrixmultiply v0.2.4
[INFO] [stderr]   Downloaded libc v0.2.117
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bio-types v0.12.1
[INFO] [stderr]   Downloaded flate2 v1.0.22
[INFO] [stderr]   Downloaded getset v0.0.9
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded ordermap v0.3.5
[INFO] [stderr]   Downloaded exitcode v1.1.2
[INFO] [stderr]   Downloaded libmath v0.1.4
[INFO] [stderr]   Downloaded lzma-sys v0.1.17
[INFO] [stderr]   Downloaded petgraph v0.4.13
[INFO] [stderr]   Downloaded statrs v0.12.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bio v0.31.0
[INFO] [stderr]   Downloaded needletail v0.4.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 583f88dca711c4458ab9d4cc73b2a0adf6e1071b23529fdf8cf173a557a09d60
[INFO] running `Command { std: "docker" "start" "-a" "583f88dca711c4458ab9d4cc73b2a0adf6e1071b23529fdf8cf173a557a09d60", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "583f88dca711c4458ab9d4cc73b2a0adf6e1071b23529fdf8cf173a557a09d60", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "583f88dca711c4458ab9d4cc73b2a0adf6e1071b23529fdf8cf173a557a09d60", kill_on_drop: false }`
[INFO] [stdout] 583f88dca711c4458ab9d4cc73b2a0adf6e1071b23529fdf8cf173a557a09d60
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8d6659ecd8a11537654a590f34cf7a02de7bd12452f24a4301ad7e672b4c7365
[INFO] running `Command { std: "docker" "start" "-a" "8d6659ecd8a11537654a590f34cf7a02de7bd12452f24a4301ad7e672b4c7365", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.117
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling crc32fast v1.3.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling buf_redux v0.8.4
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling fastrand v1.7.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling tempfile v3.3.0
[INFO] [stderr]    Compiling libmath v0.1.4
[INFO] [stderr]    Compiling threadpool v1.8.1
[INFO] [stderr]    Compiling subprocess v0.2.8
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling needletail v0.4.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling bio-types v0.12.1
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling serde_json v1.0.78
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling fmlrc v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 19s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "8d6659ecd8a11537654a590f34cf7a02de7bd12452f24a4301ad7e672b4c7365", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8d6659ecd8a11537654a590f34cf7a02de7bd12452f24a4301ad7e672b4c7365", kill_on_drop: false }`
[INFO] [stdout] 8d6659ecd8a11537654a590f34cf7a02de7bd12452f24a4301ad7e672b4c7365
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b6df4b41a54966123f7327d490298e51c2af769759a46e23fd12d6d4bdee39e4
[INFO] running `Command { std: "docker" "start" "-a" "b6df4b41a54966123f7327d490298e51c2af769759a46e23fd12d6d4bdee39e4", kill_on_drop: false }`
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling fmlrc v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 36.93s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, criterion v0.3.5
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 5`
[INFO] running `Command { std: "docker" "inspect" "b6df4b41a54966123f7327d490298e51c2af769759a46e23fd12d6d4bdee39e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b6df4b41a54966123f7327d490298e51c2af769759a46e23fd12d6d4bdee39e4", kill_on_drop: false }`
[INFO] [stdout] b6df4b41a54966123f7327d490298e51c2af769759a46e23fd12d6d4bdee39e4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] e18ce0cd061b229c2358a6cb8b9c87425d0eb7b5bf06a352f2e2eca5b80a2583
[INFO] running `Command { std: "docker" "start" "-a" "e18ce0cd061b229c2358a6cb8b9c87425d0eb7b5bf06a352f2e2eca5b80a2583", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, criterion v0.3.5
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 5`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fmlrc-3cd5b60b6418da74)
[INFO] [stdout] 
[INFO] [stdout] running 32 tests
[INFO] [stdout] test align::tests::test_edit_distance ... ok
[INFO] [stdout] test align::tests::test_edit_distance_minimize ... ok
[INFO] [stdout] test align::tests::test_wfa_ed ... ok
[INFO] [stdout] test align::tests::test_wfa_minimize ... ok
[INFO] [stdout] test bwt_converter::tests::test_compression ... ok
[INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok
[INFO] [stdout] test bwt_converter::tests::test_newline ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_allocation ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_indexing ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_offset ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_rank ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_set_bit ... ok
[INFO] [stdout] test ordered_fasta_writer::tests::test_fasta_writing ... ok
[INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok
[INFO] [stdout] test ropebwt2_util::tests::test_from_fastqs ... ignored
[INFO] [stdout] test ropebwt2_util::tests::test_from_strings ... ignored
[INFO] [stdout] test stats_util::tests::test_median ... ok
[INFO] [stdout] test string_util::tests::test_convert_itos ... ok
[INFO] [stdout] test string_util::tests::test_convert_stoi ... ok
[INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok
[INFO] [stdout] test string_util::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_simple_pileup ... ok
[INFO] [stdout] test bv_bwt::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_load_from_file has been running for over 60 seconds
[INFO] [stdout] test bwt_converter::tests::test_bwt_conversion has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_assemble has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_bridge has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_deletion_special has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_job has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_diploid_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_expansion_bridge has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "e18ce0cd061b229c2358a6cb8b9c87425d0eb7b5bf06a352f2e2eca5b80a2583", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e18ce0cd061b229c2358a6cb8b9c87425d0eb7b5bf06a352f2e2eca5b80a2583", kill_on_drop: false }`
[INFO] [stdout] e18ce0cd061b229c2358a6cb8b9c87425d0eb7b5bf06a352f2e2eca5b80a2583
