[INFO] fetching crate fmlrc 0.1.8...
[INFO] testing fmlrc-0.1.8 against master#733b47ea4b1b86216f14ef56e49440c33933f230+rustflags=-Copt-level=3 for pr-138759
[INFO] extracting crate fmlrc 0.1.8 into /workspace/builds/worker-1-tc2/source
[INFO] started tweaking crates.io crate fmlrc 0.1.8
[INFO] finished tweaking crates.io crate fmlrc 0.1.8
[INFO] tweaked toml for crates.io crate fmlrc 0.1.8 written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate fmlrc 0.1.8 on toolchain 733b47ea4b1b86216f14ef56e49440c33933f230
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+733b47ea4b1b86216f14ef56e49440c33933f230" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fmlrc 0.1.8 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+733b47ea4b1b86216f14ef56e49440c33933f230" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+733b47ea4b1b86216f14ef56e49440c33933f230" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c249d4f0810c340f80f2f5199c3ffeef10c525dca8ac425ee8ec870e8cd3518e
[INFO] running `Command { std: "docker" "start" "-a" "c249d4f0810c340f80f2f5199c3ffeef10c525dca8ac425ee8ec870e8cd3518e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c249d4f0810c340f80f2f5199c3ffeef10c525dca8ac425ee8ec870e8cd3518e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c249d4f0810c340f80f2f5199c3ffeef10c525dca8ac425ee8ec870e8cd3518e", kill_on_drop: false }`
[INFO] [stdout] c249d4f0810c340f80f2f5199c3ffeef10c525dca8ac425ee8ec870e8cd3518e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+733b47ea4b1b86216f14ef56e49440c33933f230" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 84409890ca85dacee2d7218157fa3de06eeac050701cd8aadca2edc09fac93b5
[INFO] running `Command { std: "docker" "start" "-a" "84409890ca85dacee2d7218157fa3de06eeac050701cd8aadca2edc09fac93b5", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.117
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling serde v1.0.136
[INFO] [stderr]    Compiling rustversion v1.0.6
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling crc32fast v1.3.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling buf_redux v0.8.4
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling fastrand v1.7.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling bzip2 v0.4.3
[INFO] [stderr]    Compiling flate2 v1.0.22
[INFO] [stderr]    Compiling num_cpus v1.13.1
[INFO] [stderr]    Compiling threadpool v1.8.1
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling subprocess v0.2.8
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling libmath v0.1.4
[INFO] [stderr]    Compiling tempfile v3.3.0
[INFO] [stderr]    Compiling needletail v0.4.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling serde_derive v1.0.136
[INFO] [stderr]    Compiling thiserror-impl v1.0.30
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.23.1
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling thiserror v1.0.30
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling bio-types v0.12.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.17
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling serde_json v1.0.78
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling fmlrc v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 15s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4`
[INFO] running `Command { std: "docker" "inspect" "84409890ca85dacee2d7218157fa3de06eeac050701cd8aadca2edc09fac93b5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "84409890ca85dacee2d7218157fa3de06eeac050701cd8aadca2edc09fac93b5", kill_on_drop: false }`
[INFO] [stdout] 84409890ca85dacee2d7218157fa3de06eeac050701cd8aadca2edc09fac93b5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+733b47ea4b1b86216f14ef56e49440c33933f230" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c17a0e76f879de5eba1c6c1452166bd458bb08675eeaa45838d6028a4e5070ca
[INFO] running `Command { std: "docker" "start" "-a" "c17a0e76f879de5eba1c6c1452166bd458bb08675eeaa45838d6028a4e5070ca", kill_on_drop: false }`
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling serde_cbor v0.11.2
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling criterion v0.3.5
[INFO] [stderr]    Compiling fmlrc v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 38.78s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, criterion v0.3.5
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 5`
[INFO] running `Command { std: "docker" "inspect" "c17a0e76f879de5eba1c6c1452166bd458bb08675eeaa45838d6028a4e5070ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c17a0e76f879de5eba1c6c1452166bd458bb08675eeaa45838d6028a4e5070ca", kill_on_drop: false }`
[INFO] [stdout] c17a0e76f879de5eba1c6c1452166bd458bb08675eeaa45838d6028a4e5070ca
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+733b47ea4b1b86216f14ef56e49440c33933f230" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] b70aee3bdcec7697105cef16256f25409ff61e400d8199dd6b9258b43256262a
[INFO] running `Command { std: "docker" "start" "-a" "b70aee3bdcec7697105cef16256f25409ff61e400d8199dd6b9258b43256262a", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.27s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, criterion v0.3.5
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 5`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/fmlrc-3cd5b60b6418da74)
[INFO] [stdout] 
[INFO] [stdout] running 32 tests
[INFO] [stdout] test align::tests::test_edit_distance ... ok
[INFO] [stdout] test align::tests::test_wfa_ed ... ok
[INFO] [stdout] test align::tests::test_edit_distance_minimize ... ok
[INFO] [stdout] test align::tests::test_wfa_minimize ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_allocation ... ok
[INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_indexing ... ok
[INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok
[INFO] [stdout] test bwt_converter::tests::test_compression ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_set_bit ... ok
[INFO] [stdout] test ropebwt2_util::tests::test_from_fastqs ... ignored
[INFO] [stdout] test ropebwt2_util::tests::test_from_strings ... ignored
[INFO] [stdout] test indexed_bit_vec::tests::test_rank ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_offset ... ok
[INFO] [stdout] test ordered_fasta_writer::tests::test_fasta_writing ... ok
[INFO] [stdout] test string_util::tests::test_convert_itos ... ok
[INFO] [stdout] test stats_util::tests::test_median ... ok
[INFO] [stdout] test bwt_converter::tests::test_newline ... ok
[INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok
[INFO] [stdout] test string_util::tests::test_simple_index ... ok
[INFO] [stdout] test string_util::tests::test_convert_stoi ... ok
[INFO] [stdout] test bv_bwt::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_load_from_file ... FAILED
[INFO] [stdout] test bv_bwt::tests::test_simple_pileup ... ok
[INFO] [stdout] test bwt_converter::tests::test_bwt_conversion has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_assemble has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_bridge has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_deletion_special has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_job has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_diploid_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_expansion_bridge has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "b70aee3bdcec7697105cef16256f25409ff61e400d8199dd6b9258b43256262a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b70aee3bdcec7697105cef16256f25409ff61e400d8199dd6b9258b43256262a", kill_on_drop: false }`
[INFO] [stdout] b70aee3bdcec7697105cef16256f25409ff61e400d8199dd6b9258b43256262a
