[INFO] cloning repository https://github.com/bwbioinfo/nanocov
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bwbioinfo/nanocov" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbwbioinfo%2Fnanocov", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbwbioinfo%2Fnanocov'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c1933a0e08020c5c771ab650104e7db591bc5525
[INFO] testing bwbioinfo/nanocov against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbwbioinfo%2Fnanocov" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
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[INFO] started tweaking git repo https://github.com/bwbioinfo/nanocov
[INFO] finished tweaking git repo https://github.com/bwbioinfo/nanocov
[INFO] tweaked toml for git repo https://github.com/bwbioinfo/nanocov written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/bwbioinfo/nanocov on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/bwbioinfo/nanocov already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9692978c352000aba77d38eeb7e62d76f5e8459dcbc3cb80d479145d45e26831
[INFO] running `Command { std: "docker" "start" "-a" "9692978c352000aba77d38eeb7e62d76f5e8459dcbc3cb80d479145d45e26831", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9692978c352000aba77d38eeb7e62d76f5e8459dcbc3cb80d479145d45e26831", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9692978c352000aba77d38eeb7e62d76f5e8459dcbc3cb80d479145d45e26831", kill_on_drop: false }`
[INFO] [stdout] 9692978c352000aba77d38eeb7e62d76f5e8459dcbc3cb80d479145d45e26831
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5d129b787316ebf3d568755c797e235b5c770d2fbd4f2743365b2d029b4a1259
[INFO] running `Command { std: "docker" "start" "-a" "5d129b787316ebf3d568755c797e235b5c770d2fbd4f2743365b2d029b4a1259", kill_on_drop: false }`
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[INFO] [stderr]    Compiling freetype-sys v0.20.1
[INFO] [stderr]    Compiling chrono v0.4.41
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[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling tokio v1.45.0
[INFO] [stderr]    Compiling futures-executor v0.3.31
[INFO] [stderr]    Compiling clap v4.5.38
[INFO] [stderr]    Compiling futures v0.3.31
[INFO] [stderr]    Compiling tokio-util v0.7.15
[INFO] [stderr]    Compiling noodles-bgzf v0.40.0
[INFO] [stderr]    Compiling noodles-csi v0.48.0
[INFO] [stderr]    Compiling noodles-sam v0.76.0
[INFO] [stderr]    Compiling noodles-bam v0.80.0
[INFO] [stderr]    Compiling nanocov v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]    --> src/io/mod.rs:643:9
[INFO] [stdout]     |
[INFO] [stdout] 643 |     use std::fs::File;
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufWriter` and `Write`
[INFO] [stdout]    --> src/io/mod.rs:644:19
[INFO] [stdout]     |
[INFO] [stdout] 644 |     use std::io::{Write, BufWriter};
[INFO] [stdout]     |                   ^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]    --> src/io/mod.rs:645:9
[INFO] [stdout]     |
[INFO] [stdout] 645 |     use std::io::BufReader;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `noodles_core::Region`
[INFO] [stdout]    --> src/io/mod.rs:647:9
[INFO] [stdout]     |
[INFO] [stdout] 647 |     use noodles_core::Region;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `noodles_core::Position`
[INFO] [stdout]    --> src/io/mod.rs:648:9
[INFO] [stdout]     |
[INFO] [stdout] 648 |     use noodles_core::Position;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `chart_plotting_area`
[INFO] [stdout]    --> src/plotting/multi_chrom.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |     let chart_plotting_area = chart_area.margin(10, 10, 80, 60);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chart_plotting_area`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/plotting/multi_chrom.rs:156:22
[INFO] [stdout]     |
[INFO] [stdout] 156 |     let (title_area, mut chart_area) = root.split_vertically(80);
[INFO] [stdout]     |                      ----^^^^^^^^^^
[INFO] [stdout]     |                      |
[INFO] [stdout]     |                      help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `run_coverage_in_memory` is never used
[INFO] [stdout]    --> src/io/mod.rs:305:4
[INFO] [stdout]     |
[INFO] [stdout] 305 | fn run_coverage_in_memory(cli: &Cli, read_stats: Option<ReadStats>) -> Result<(), Box<dyn std::error::Error>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `target_regions` is never read
[INFO] [stdout]    --> src/io/mod.rs:741:5
[INFO] [stdout]     |
[INFO] [stdout] 737 | struct CoverageChunk {
[INFO] [stdout]     |        ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 741 |     target_regions: Option<Vec<(u32, u32)>>, // BED regions within this chunk
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `CoverageChunk` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 39s
[INFO] running `Command { std: "docker" "inspect" "5d129b787316ebf3d568755c797e235b5c770d2fbd4f2743365b2d029b4a1259", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5d129b787316ebf3d568755c797e235b5c770d2fbd4f2743365b2d029b4a1259", kill_on_drop: false }`
[INFO] [stdout] 5d129b787316ebf3d568755c797e235b5c770d2fbd4f2743365b2d029b4a1259
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fc4e909f5134c34cc72696de0acbc3df186b0ac6d5621e39be0593d590fe3e9d
[INFO] running `Command { std: "docker" "start" "-a" "fc4e909f5134c34cc72696de0acbc3df186b0ac6d5621e39be0593d590fe3e9d", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.4.9
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[INFO] [stderr]    Compiling linux-raw-sys v0.9.4
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[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling predicates-tree v1.0.12
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[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling noodles-csi v0.48.0
[INFO] [stderr]    Compiling tempfile v3.20.0
[INFO] [stderr]    Compiling noodles-sam v0.76.0
[INFO] [stderr]    Compiling noodles-bam v0.80.0
[INFO] [stderr]    Compiling nanocov v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]    --> src/io/mod.rs:643:9
[INFO] [stdout]     |
[INFO] [stdout] 643 |     use std::fs::File;
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufWriter` and `Write`
[INFO] [stdout]    --> src/io/mod.rs:644:19
[INFO] [stdout]     |
[INFO] [stdout] 644 |     use std::io::{Write, BufWriter};
[INFO] [stdout]     |                   ^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]    --> src/io/mod.rs:645:9
[INFO] [stdout]     |
[INFO] [stdout] 645 |     use std::io::BufReader;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `noodles_core::Region`
[INFO] [stdout]    --> src/io/mod.rs:647:9
[INFO] [stdout]     |
[INFO] [stdout] 647 |     use noodles_core::Region;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `noodles_core::Position`
[INFO] [stdout]    --> src/io/mod.rs:648:9
[INFO] [stdout]     |
[INFO] [stdout] 648 |     use noodles_core::Position;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::File`
[INFO] [stdout]    --> src/io/mod.rs:643:9
[INFO] [stdout]     |
[INFO] [stdout] 643 |     use std::fs::File;
[INFO] [stdout]     |         ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `BufWriter` and `Write`
[INFO] [stdout]    --> src/io/mod.rs:644:19
[INFO] [stdout]     |
[INFO] [stdout] 644 |     use std::io::{Write, BufWriter};
[INFO] [stdout]     |                   ^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::io::BufReader`
[INFO] [stdout]    --> src/io/mod.rs:645:9
[INFO] [stdout]     |
[INFO] [stdout] 645 |     use std::io::BufReader;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `noodles_core::Region`
[INFO] [stdout]    --> src/io/mod.rs:647:9
[INFO] [stdout]     |
[INFO] [stdout] 647 |     use noodles_core::Region;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `noodles_core::Position`
[INFO] [stdout]    --> src/io/mod.rs:648:9
[INFO] [stdout]     |
[INFO] [stdout] 648 |     use noodles_core::Position;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `chart_plotting_area`
[INFO] [stdout]    --> src/plotting/multi_chrom.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |     let chart_plotting_area = chart_area.margin(10, 10, 80, 60);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chart_plotting_area`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `chart_plotting_area`
[INFO] [stdout]    --> src/plotting/multi_chrom.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |     let chart_plotting_area = chart_area.margin(10, 10, 80, 60);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chart_plotting_area`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/plotting/multi_chrom.rs:156:22
[INFO] [stdout]     |
[INFO] [stdout] 156 |     let (title_area, mut chart_area) = root.split_vertically(80);
[INFO] [stdout]     |                      ----^^^^^^^^^^
[INFO] [stdout]     |                      |
[INFO] [stdout]     |                      help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/plotting/multi_chrom.rs:156:22
[INFO] [stdout]     |
[INFO] [stdout] 156 |     let (title_area, mut chart_area) = root.split_vertically(80);
[INFO] [stdout]     |                      ----^^^^^^^^^^
[INFO] [stdout]     |                      |
[INFO] [stdout]     |                      help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `run_coverage_in_memory` is never used
[INFO] [stdout]    --> src/io/mod.rs:305:4
[INFO] [stdout]     |
[INFO] [stdout] 305 | fn run_coverage_in_memory(cli: &Cli, read_stats: Option<ReadStats>) -> Result<(), Box<dyn std::error::Error>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `target_regions` is never read
[INFO] [stdout]    --> src/io/mod.rs:741:5
[INFO] [stdout]     |
[INFO] [stdout] 737 | struct CoverageChunk {
[INFO] [stdout]     |        ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 741 |     target_regions: Option<Vec<(u32, u32)>>, // BED regions within this chunk
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `CoverageChunk` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `run_coverage_in_memory` is never used
[INFO] [stdout]    --> src/io/mod.rs:305:4
[INFO] [stdout]     |
[INFO] [stdout] 305 | fn run_coverage_in_memory(cli: &Cli, read_stats: Option<ReadStats>) -> Result<(), Box<dyn std::error::Error>> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `target_regions` is never read
[INFO] [stdout]    --> src/io/mod.rs:741:5
[INFO] [stdout]     |
[INFO] [stdout] 737 | struct CoverageChunk {
[INFO] [stdout]     |        ------------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 741 |     target_regions: Option<Vec<(u32, u32)>>, // BED regions within this chunk
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `CoverageChunk` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 30s
[INFO] running `Command { std: "docker" "inspect" "fc4e909f5134c34cc72696de0acbc3df186b0ac6d5621e39be0593d590fe3e9d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc4e909f5134c34cc72696de0acbc3df186b0ac6d5621e39be0593d590fe3e9d", kill_on_drop: false }`
[INFO] [stdout] fc4e909f5134c34cc72696de0acbc3df186b0ac6d5621e39be0593d590fe3e9d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 6abad6ecaf1fe50ff413e179ab20562936cbf454a418c0e87fb2d551059a016c
[INFO] running `Command { std: "docker" "start" "-a" "6abad6ecaf1fe50ff413e179ab20562936cbf454a418c0e87fb2d551059a016c", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `std::fs::File`
[INFO] [stderr]    --> src/io/mod.rs:643:9
[INFO] [stderr]     |
[INFO] [stderr] 643 |     use std::fs::File;
[INFO] [stderr]     |         ^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `BufWriter` and `Write`
[INFO] [stderr]    --> src/io/mod.rs:644:19
[INFO] [stderr]     |
[INFO] [stderr] 644 |     use std::io::{Write, BufWriter};
[INFO] [stderr]     |                   ^^^^^  ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::io::BufReader`
[INFO] [stderr]    --> src/io/mod.rs:645:9
[INFO] [stderr]     |
[INFO] [stderr] 645 |     use std::io::BufReader;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `noodles_core::Region`
[INFO] [stderr]    --> src/io/mod.rs:647:9
[INFO] [stderr]     |
[INFO] [stderr] 647 |     use noodles_core::Region;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `noodles_core::Position`
[INFO] [stderr]    --> src/io/mod.rs:648:9
[INFO] [stderr]     |
[INFO] [stderr] 648 |     use noodles_core::Position;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `chart_plotting_area`
[INFO] [stderr]    --> src/plotting/multi_chrom.rs:169:9
[INFO] [stderr]     |
[INFO] [stderr] 169 |     let chart_plotting_area = chart_area.margin(10, 10, 80, 60);
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_chart_plotting_area`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/plotting/multi_chrom.rs:156:22
[INFO] [stderr]     |
[INFO] [stderr] 156 |     let (title_area, mut chart_area) = root.split_vertically(80);
[INFO] [stderr]     |                      ----^^^^^^^^^^
[INFO] [stderr]     |                      |
[INFO] [stderr]     |                      help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function `run_coverage_in_memory` is never used
[INFO] [stderr]    --> src/io/mod.rs:305:4
[INFO] [stderr]     |
[INFO] [stderr] 305 | fn run_coverage_in_memory(cli: &Cli, read_stats: Option<ReadStats>) -> Result<(), Box<dyn std::error::Error>> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field `target_regions` is never read
[INFO] [stderr]    --> src/io/mod.rs:741:5
[INFO] [stderr]     |
[INFO] [stderr] 737 | struct CoverageChunk {
[INFO] [stderr]     |        ------------- field in this struct
[INFO] [stderr] ...
[INFO] [stderr] 741 |     target_regions: Option<Vec<(u32, u32)>>, // BED regions within this chunk
[INFO] [stderr]     |     ^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `CoverageChunk` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: `nanocov` (bin "nanocov") generated 9 warnings (run `cargo fix --bin "nanocov"` to apply 6 suggestions)
[INFO] [stderr] warning: `nanocov` (bin "nanocov" test) generated 9 warnings (9 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/nanocov-f9636e9fbad233ab)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/nanocov-6a6b42acd6665d21)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test plotting::stats::tests::test_coverage_stats_calculation ... ok
[INFO] [stdout] test plotting::stats::tests::test_empty_input ... ok
[INFO] [stdout] test plotting::stats::tests::test_per_base_stats_calculation ... ok
[INFO] [stdout] test plotting::utils::tests::test_blend_colors ... ok
[INFO] [stdout] test plotting::utils::tests::test_calculate_bin_size ... ok
[INFO] [stdout] test plotting::utils::tests::test_format_file_size ... ok
[INFO] [stdout] test plotting::utils::tests::test_format_number ... ok
[INFO] [stdout] test plotting::tests::test_plot_output ... ok
[INFO] [stdout] test plotting::multi_chrom::tests::test_multi_chromosome_plot ... FAILED
[INFO] [stdout] test plotting::tests::test_plot_per_base_coverage_with_different_themes ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- plotting::multi_chrom::tests::test_multi_chromosome_plot stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'plotting::multi_chrom::tests::test_multi_chromosome_plot' panicked at src/plotting/multi_chrom.rs:392:14:
[INFO] [stdout] Multi-chromosome plotting should succeed: BackendError(DrawingError(ImageError(IoError(Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }))))
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x579b03482b32 - std::backtrace_rs::backtrace::libunwind::trace::hd39b1f53d3cf9745
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stdout]    1:     0x579b03482b32 - std::backtrace_rs::backtrace::trace_unsynchronized::he91d9a75d4e3972b
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stdout]    2:     0x579b03482b32 - std::sys::backtrace::_print_fmt::hca46938f8c6e22cf
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:66:9
[INFO] [stdout]    3:     0x579b03482b32 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::ha499add612cccf8e
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:39:26
[INFO] [stdout]    4:     0x579b034aa453 - core::fmt::rt::Argument::fmt::hd21145b75a833b7a
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/rt.rs:173:76
[INFO] [stdout]    5:     0x579b034aa453 - core::fmt::write::hb10c956f5235c8a4
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/mod.rs:1465:25
[INFO] [stdout]    6:     0x579b0347fba3 - std::io::default_write_fmt::hdb7615052be2ba4d
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:639:11
[INFO] [stdout]    7:     0x579b0347fba3 - std::io::Write::write_fmt::he1bcd251ec6e4153
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:1954:13
[INFO] [stdout]    8:     0x579b03482982 - std::sys::backtrace::BacktraceLock::print::hb47c770ef659fd10
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:42:9
[INFO] [stdout]    9:     0x579b0348415c - std::panicking::default_hook::{{closure}}::hdda8afb9d457a22c
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:300:27
[INFO] [stdout]   10:     0x579b03483fb2 - std::panicking::default_hook::h7c46b44874fe5c9a
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:324:9
[INFO] [stdout]   11:     0x579b034004c4 - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h178a5fcedee41e2f
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   12:     0x579b034004c4 - test::test_main_with_exit_callback::{{closure}}::h951a41e0149d6d5d
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:145:21
[INFO] [stdout]   13:     0x579b03484c3b - <alloc::boxed::Box<F,A> as core::ops::function::Fn<Args>>::call::h13602080f5b63276
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1985:9
[INFO] [stdout]   14:     0x579b03484c3b - std::panicking::rust_panic_with_hook::ha6cb99ed099eb1c5
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:841:13
[INFO] [stdout]   15:     0x579b0348490a - std::panicking::begin_panic_handler::{{closure}}::he11808bc797ee921
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:706:13
[INFO] [stdout]   16:     0x579b03483039 - std::sys::backtrace::__rust_end_short_backtrace::h9418807cb7346258
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:168:18
[INFO] [stdout]   17:     0x579b0348459d - __rustc[18fb429eef004894]::rust_begin_unwind
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:697:5
[INFO] [stdout]   18:     0x579b034a8bf0 - core::panicking::panic_fmt::hd890aeb12c3a3fc3
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panicking.rs:75:14
[INFO] [stdout]   19:     0x579b034a8f96 - core::result::unwrap_failed::h31c9775ec1a50121
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1761:5
[INFO] [stdout]   20:     0x579b033b5389 - core::result::Result<T,E>::expect::h516408f242e68eda
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/result.rs:1119:23
[INFO] [stdout]   21:     0x579b033b5389 - nanocov::plotting::multi_chrom::tests::test_multi_chromosome_plot::h60744bea0ab14ef7
[INFO] [stdout]                                at /opt/rustwide/workdir/src/plotting/multi_chrom.rs:392:14
[INFO] [stdout]   22:     0x579b033c20f9 - nanocov::plotting::multi_chrom::tests::test_multi_chromosome_plot::{{closure}}::h5dfca2b417febe96
[INFO] [stdout]                                at /opt/rustwide/workdir/src/plotting/multi_chrom.rs:371:36
[INFO] [stdout]   23:     0x579b033c20f9 - core::ops::function::FnOnce::call_once::hb1aede422859f2a2
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   24:     0x579b03405c4b - core::ops::function::FnOnce::call_once::h2869fb5b0a2b0bdc
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   25:     0x579b03405c4b - test::__rust_begin_short_backtrace::h7dd7142bd62fa711
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:648:18
[INFO] [stdout]   26:     0x579b03404e3e - test::run_test_in_process::{{closure}}::h43a753f038d36b3f
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:74
[INFO] [stdout]   27:     0x579b03404e3e - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h0ca95dd3e12d1e16
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   28:     0x579b03404e3e - std::panicking::catch_unwind::do_call::he308587d70ac34ba
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40
[INFO] [stdout]   29:     0x579b03404e3e - std::panicking::catch_unwind::h30dcba31973e8fb0
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19
[INFO] [stdout]   30:     0x579b03404e3e - std::panic::catch_unwind::hfb68364e5621fbee
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14
[INFO] [stdout]   31:     0x579b03404e3e - test::run_test_in_process::hcdcc2977903b998a
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:671:27
[INFO] [stdout]   32:     0x579b03404e3e - test::run_test::{{closure}}::h544a6550958c5d14
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:592:43
[INFO] [stdout]   33:     0x579b033c89b4 - test::run_test::{{closure}}::hb172e48ebe2b92c7
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/test/src/lib.rs:622:41
[INFO] [stdout]   34:     0x579b033c89b4 - std::sys::backtrace::__rust_begin_short_backtrace::h7e79d8706638bea0
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:152:18
[INFO] [stdout]   35:     0x579b033cc38a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hc4a275f1e71b8ab0
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:559:17
[INFO] [stdout]   36:     0x579b033cc38a - <core::panic::unwind_safe::AssertUnwindSafe<F> as core::ops::function::FnOnce<()>>::call_once::h01ed0d242df78cfd
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panic/unwind_safe.rs:272:9
[INFO] [stdout]   37:     0x579b033cc38a - std::panicking::catch_unwind::do_call::h052f373fb905fee0
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40
[INFO] [stdout]   38:     0x579b033cc38a - std::panicking::catch_unwind::hb425d20c8ffb09c8
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19
[INFO] [stdout]   39:     0x579b033cc38a - std::panic::catch_unwind::ha0d5dfbf18fdeda5
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14
[INFO] [stdout]   40:     0x579b033cc38a - std::thread::Builder::spawn_unchecked_::{{closure}}::hbe79182bd37949c7
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/thread/mod.rs:557:30
[INFO] [stdout]   41:     0x579b033cc38a - core::ops::function::FnOnce::call_once{{vtable.shim}}::hc096c4a06972fde5
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:250:5
[INFO] [stdout]   42:     0x579b03487b97 - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h47377e27fb938a26
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9
[INFO] [stdout]   43:     0x579b03487b97 - <alloc::boxed::Box<F,A> as core::ops::function::FnOnce<Args>>::call_once::h72f1fe5d095abf57
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/alloc/src/boxed.rs:1971:9
[INFO] [stdout]   44:     0x579b03487b97 - std::sys::pal::unix::thread::Thread::new::thread_start::h0a4d8e1b9c0d38cf
[INFO] [stdout]                                at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/pal/unix/thread.rs:97:17
[INFO] [stdout]   45:     0x73fb81e42aa4 - <unknown>
[INFO] [stdout]   46:     0x73fb81ecfa34 - clone
[INFO] [stdout]   47:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     plotting::multi_chrom::tests::test_multi_chromosome_plot
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 9 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.43s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--bin nanocov`
[INFO] running `Command { std: "docker" "inspect" "6abad6ecaf1fe50ff413e179ab20562936cbf454a418c0e87fb2d551059a016c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6abad6ecaf1fe50ff413e179ab20562936cbf454a418c0e87fb2d551059a016c", kill_on_drop: false }`
[INFO] [stdout] 6abad6ecaf1fe50ff413e179ab20562936cbf454a418c0e87fb2d551059a016c
