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[INFO] [stdout] 2cc366012364a61ca9102d9fe441ae2a757af62d
[INFO] testing SteampunkIslande/rust-hgvs2 against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSteampunkIslande%2Frust-hgvs2" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
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[INFO] [stderr]    Compiling pyhgvs2 v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `transcript`
[INFO] [stdout]    --> src/hgvs_name.rs:925:30
[INFO] [stdout]     |
[INFO] [stdout] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `transcript`
[INFO] [stdout]    --> src/hgvs_name.rs:929:30
[INFO] [stdout]     |
[INFO] [stdout] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `coord`
[INFO] [stdout]   --> src/transcript.rs:78:41
[INFO] [stdout]    |
[INFO] [stdout] 78 |     pub fn cdna_to_genomic_coord(&self, coord: &CDNACoord) -> u64 {
[INFO] [stdout]    |                                         ^^^^^ help: if this is intentional, prefix it with an underscore: `_coord`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_raw_coords`, `get_ref_coords`, and `get_vcf_coords` are never used
[INFO] [stdout]    --> src/hgvs_name.rs:904:8
[INFO] [stdout]     |
[INFO] [stdout] 369 | impl HGVSName {
[INFO] [stdout]     | ------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 904 |     fn get_raw_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `start_codon_transcript_pos` and `stop_codon_transcript_pos` are never read
[INFO] [stdout]   --> src/transcript.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | pub struct Transcript {
[INFO] [stdout]    |            ---------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 22 |     start_codon_transcript_pos: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 23 |     stop_codon_transcript_pos: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 58s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "8434763b3fb3c97a31734e16f1a712173a2e34d3497bb81cccbe3648eebf4ec1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8434763b3fb3c97a31734e16f1a712173a2e34d3497bb81cccbe3648eebf4ec1", kill_on_drop: false }`
[INFO] [stdout] 8434763b3fb3c97a31734e16f1a712173a2e34d3497bb81cccbe3648eebf4ec1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e244f98f3857aed11c502a326f3c07c5d8cfe13c6537ab97b136af106b65e02b
[INFO] running `Command { std: "docker" "start" "-a" "e244f98f3857aed11c502a326f3c07c5d8cfe13c6537ab97b136af106b65e02b", kill_on_drop: false }`
[INFO] [stdout] warning: unused variable: `transcript`
[INFO] [stdout]    --> src/hgvs_name.rs:925:30
[INFO] [stdout]     |
[INFO] [stdout] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `transcript`
[INFO] [stdout]    --> src/hgvs_name.rs:929:30
[INFO] [stdout]     |
[INFO] [stdout] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `coord`
[INFO] [stdout]   --> src/transcript.rs:78:41
[INFO] [stdout]    |
[INFO] [stdout] 78 |     pub fn cdna_to_genomic_coord(&self, coord: &CDNACoord) -> u64 {
[INFO] [stdout]    |                                         ^^^^^ help: if this is intentional, prefix it with an underscore: `_coord`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_raw_coords`, `get_ref_coords`, and `get_vcf_coords` are never used
[INFO] [stdout]    --> src/hgvs_name.rs:904:8
[INFO] [stdout]     |
[INFO] [stdout] 369 | impl HGVSName {
[INFO] [stdout]     | ------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 904 |     fn get_raw_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `start_codon_transcript_pos` and `stop_codon_transcript_pos` are never read
[INFO] [stdout]   --> src/transcript.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | pub struct Transcript {
[INFO] [stdout]    |            ---------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 22 |     start_codon_transcript_pos: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 23 |     stop_codon_transcript_pos: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling pyhgvs2 v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `transcript`
[INFO] [stdout]    --> src/hgvs_name.rs:925:30
[INFO] [stdout]     |
[INFO] [stdout] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `transcript`
[INFO] [stdout]    --> src/hgvs_name.rs:929:30
[INFO] [stdout]     |
[INFO] [stdout] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `coord`
[INFO] [stdout]   --> src/transcript.rs:78:41
[INFO] [stdout]    |
[INFO] [stdout] 78 |     pub fn cdna_to_genomic_coord(&self, coord: &CDNACoord) -> u64 {
[INFO] [stdout]    |                                         ^^^^^ help: if this is intentional, prefix it with an underscore: `_coord`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `get_raw_coords`, `get_ref_coords`, and `get_vcf_coords` are never used
[INFO] [stdout]    --> src/hgvs_name.rs:904:8
[INFO] [stdout]     |
[INFO] [stdout] 369 | impl HGVSName {
[INFO] [stdout]     | ------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 904 |     fn get_raw_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `start_codon_transcript_pos` and `stop_codon_transcript_pos` are never read
[INFO] [stdout]   --> src/transcript.rs:22:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | pub struct Transcript {
[INFO] [stdout]    |            ---------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 22 |     start_codon_transcript_pos: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 23 |     stop_codon_transcript_pos: Option<u64>,
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.64s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] running `Command { std: "docker" "inspect" "e244f98f3857aed11c502a326f3c07c5d8cfe13c6537ab97b136af106b65e02b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e244f98f3857aed11c502a326f3c07c5d8cfe13c6537ab97b136af106b65e02b", kill_on_drop: false }`
[INFO] [stdout] e244f98f3857aed11c502a326f3c07c5d8cfe13c6537ab97b136af106b65e02b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 33a0f3be38f51ecc42acd400b46e003a5e08bca93fee2c7efef548eb76bf949d
[INFO] running `Command { std: "docker" "start" "-a" "33a0f3be38f51ecc42acd400b46e003a5e08bca93fee2c7efef548eb76bf949d", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `transcript`
[INFO] [stderr]    --> src/hgvs_name.rs:925:30
[INFO] [stderr]     |
[INFO] [stderr] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stderr]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `transcript`
[INFO] [stderr]    --> src/hgvs_name.rs:929:30
[INFO] [stderr]     |
[INFO] [stderr] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stderr]     |                              ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_transcript`
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `coord`
[INFO] [stderr]   --> src/transcript.rs:78:41
[INFO] [stderr]    |
[INFO] [stderr] 78 |     pub fn cdna_to_genomic_coord(&self, coord: &CDNACoord) -> u64 {
[INFO] [stderr]    |                                         ^^^^^ help: if this is intentional, prefix it with an underscore: `_coord`
[INFO] [stderr] 
[INFO] [stderr] warning: methods `get_raw_coords`, `get_ref_coords`, and `get_vcf_coords` are never used
[INFO] [stderr]    --> src/hgvs_name.rs:904:8
[INFO] [stderr]     |
[INFO] [stderr] 369 | impl HGVSName {
[INFO] [stderr]     | ------------- methods in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 904 |     fn get_raw_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 925 |     fn get_ref_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 929 |     fn get_vcf_coords(&self, transcript: Option<&Transcript>) -> Option<(String, i64, i64)> {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: fields `start_codon_transcript_pos` and `stop_codon_transcript_pos` are never read
[INFO] [stderr]   --> src/transcript.rs:22:5
[INFO] [stderr]    |
[INFO] [stderr] 14 | pub struct Transcript {
[INFO] [stderr]    |            ---------- fields in this struct
[INFO] [stderr] ...
[INFO] [stderr] 22 |     start_codon_transcript_pos: Option<u64>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 23 |     stop_codon_transcript_pos: Option<u64>,
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `pyhgvs2` (lib) generated 5 warnings
[INFO] [stderr] warning: `pyhgvs2` (lib test) generated 5 warnings (5 duplicates)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/pyhgvs2-23fa5d133f21a53f)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test variants::tests::test_revcomp ... ok
[INFO] [stdout] test genome::tests::test_genome_get ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/pyhgvs2-c1d99962205f73e2)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests pyhgvs2
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/variants.rs - variants::revcomp (line 23) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "33a0f3be38f51ecc42acd400b46e003a5e08bca93fee2c7efef548eb76bf949d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "33a0f3be38f51ecc42acd400b46e003a5e08bca93fee2c7efef548eb76bf949d", kill_on_drop: false }`
[INFO] [stdout] 33a0f3be38f51ecc42acd400b46e003a5e08bca93fee2c7efef548eb76bf949d
