[INFO] cloning repository https://github.com/COMBINE-lab/piscem
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a12e1ee0bfbf88a0208153fd49331c69b7c970ec
[INFO] testing COMBINE-lab/piscem against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/COMBINE-lab/piscem already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded path-tools v0.1.0
[INFO] [stderr]   Downloaded terminal_size v0.4.2
[INFO] [stderr]   Downloaded prepare_fasta v0.2.0
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded bytecount v0.6.9
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded sha2-asm v0.6.4
[INFO] [stderr]   Downloaded needletail v0.6.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 079e7dc7926b52730d35030926e14aae19dc6fe756a2db2d4455d3be8424aace
[INFO] running `Command { std: "docker" "start" "-a" "079e7dc7926b52730d35030926e14aae19dc6fe756a2db2d4455d3be8424aace", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "079e7dc7926b52730d35030926e14aae19dc6fe756a2db2d4455d3be8424aace", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "079e7dc7926b52730d35030926e14aae19dc6fe756a2db2d4455d3be8424aace", kill_on_drop: false }`
[INFO] [stdout] 079e7dc7926b52730d35030926e14aae19dc6fe756a2db2d4455d3be8424aace
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a782af720d4688434136b458a71d60f4159f10871746cc43ff84e902eab1c91a
[INFO] running `Command { std: "docker" "start" "-a" "a782af720d4688434136b458a71d60f4159f10871746cc43ff84e902eab1c91a", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.174
[INFO] [stderr]    Compiling rustix v1.0.7
[INFO] [stderr]    Compiling linux-raw-sys v0.9.4
[INFO] [stderr]    Compiling bitflags v2.9.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling syn v2.0.104
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling sharded-slab v0.1.7
[INFO] [stderr]    Compiling thread_local v1.1.9
[INFO] [stderr]    Compiling tracing-core v0.1.34
[INFO] [stderr]    Compiling path-tools v0.1.0
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling matchers v0.1.0
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling terminal_size v0.4.2
[INFO] [stderr]    Compiling clap_builder v4.5.41
[INFO] [stderr]    Compiling cc v1.2.29
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling sha2-asm v0.6.4
[INFO] [stderr]    Compiling piscem v0.14.2 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr] error: failed to run custom build command for `piscem v0.14.2 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/piscem-fd701f4826f56def/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=cuttlefish/CMakeLists.txt
[INFO] [stderr]   cargo:rerun-if-changed=piscem-cpp/CMakeLists.txt
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/piscem-3762e87a8bbd6f9b/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/workdir/piscem-cpp" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/piscem-3762e87a8bbd6f9b/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Ignoring extra path from command line:
[INFO] [stderr] 
[INFO] [stderr]      "/opt/rustwide/workdir/piscem-cpp"
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: The source directory "/opt/rustwide/workdir/piscem-cpp" does not appear to contain CMakeLists.txt.
[INFO] [stderr]   Specify --help for usage, or press the help button on the CMake GUI.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.54/src/lib.rs:1119:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5cdefeff9f42 - std::backtrace_rs::backtrace::libunwind::trace::hd39b1f53d3cf9745
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5cdefeff9f42 - std::backtrace_rs::backtrace::trace_unsynchronized::he91d9a75d4e3972b
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5cdefeff9f42 - std::sys::backtrace::_print_fmt::hca46938f8c6e22cf
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5cdefeff9f42 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::ha499add612cccf8e
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5cdeff01ca93 - core::fmt::rt::Argument::fmt::hd21145b75a833b7a
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x5cdeff01ca93 - core::fmt::write::hb10c956f5235c8a4
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/fmt/mod.rs:1465:25
[INFO] [stderr]      6:     0x5cdefeff6cf3 - std::io::default_write_fmt::h1470b6bb31d733fd
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5cdefeff6cf3 - std::io::Write::write_fmt::hd8146ab3991543d1
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x5cdefeff9d92 - std::sys::backtrace::BacktraceLock::print::hb47c770ef659fd10
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5cdefeffb226 - std::panicking::default_hook::{{closure}}::hdda8afb9d457a22c
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:300:27
[INFO] [stderr]     10:     0x5cdefeffb029 - std::panicking::default_hook::h7c46b44874fe5c9a
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x5cdefeffbbf2 - std::panicking::rust_panic_with_hook::ha6cb99ed099eb1c5
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x5cdefeffb98a - std::panicking::begin_panic_handler::{{closure}}::he11808bc797ee921
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:706:13
[INFO] [stderr]     13:     0x5cdefeffa449 - std::sys::backtrace::__rust_end_short_backtrace::h9418807cb7346258
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/sys/backtrace.rs:168:18
[INFO] [stderr]     14:     0x5cdefeffb61d - __rustc[18fb429eef004894]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x5cdeff01ba00 - core::panicking::panic_fmt::hd890aeb12c3a3fc3
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x5cdefefa33c7 - cmake::fail::hddfdb9993d651231
[INFO] [stderr]     17:     0x5cdefefa2ed1 - cmake::run::h2b5d58fba52aab44
[INFO] [stderr]     18:     0x5cdefef9f2b6 - cmake::Config::build::h3c19c6edb5bff7f1
[INFO] [stderr]     19:     0x5cdefef96a3d - build_script_build::main::he0229837f7afc01f
[INFO] [stderr]     20:     0x5cdefef93ba3 - std::sys::backtrace::__rust_begin_short_backtrace::hf9019410cc6a7f80
[INFO] [stderr]     21:     0x5cdefef93b99 - std::rt::lang_start::{{closure}}::hb5379a75dfc3ff79
[INFO] [stderr]     22:     0x5cdefeff2970 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h106557a9d245eb10
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/core/src/ops/function.rs:284:21
[INFO] [stderr]     23:     0x5cdefeff2970 - std::panicking::catch_unwind::do_call::h18100d9574045a86
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40
[INFO] [stderr]     24:     0x5cdefeff2970 - std::panicking::catch_unwind::hf9f86a2471d520c7
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19
[INFO] [stderr]     25:     0x5cdefeff2970 - std::panic::catch_unwind::h410688ae8e8348a9
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14
[INFO] [stderr]     26:     0x5cdefeff2970 - std::rt::lang_start_internal::{{closure}}::h42fee7344f1a80c6
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/rt.rs:175:24
[INFO] [stderr]     27:     0x5cdefeff2970 - std::panicking::catch_unwind::do_call::h62b4ab9c433ebcfb
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:589:40
[INFO] [stderr]     28:     0x5cdefeff2970 - std::panicking::catch_unwind::h61ceb8228d4a4310
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panicking.rs:552:19
[INFO] [stderr]     29:     0x5cdefeff2970 - std::panic::catch_unwind::hf4a60a68b20bb306
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/panic.rs:359:14
[INFO] [stderr]     30:     0x5cdefeff2970 - std::rt::lang_start_internal::h3478bd2aa4cc9cb2
[INFO] [stderr]                                  at /rustc/d98a5da813da67eb189387b8ccfb73cf481275d8/library/std/src/rt.rs:171:5
[INFO] [stderr]     31:     0x5cdefef98105 - main
[INFO] [stderr]     32:     0x7abab032b1ca - <unknown>
[INFO] [stderr]     33:     0x7abab032b28b - __libc_start_main
[INFO] [stderr]     34:     0x5cdefef93ac5 - _start
[INFO] [stderr]     35:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "a782af720d4688434136b458a71d60f4159f10871746cc43ff84e902eab1c91a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a782af720d4688434136b458a71d60f4159f10871746cc43ff84e902eab1c91a", kill_on_drop: false }`
[INFO] [stdout] a782af720d4688434136b458a71d60f4159f10871746cc43ff84e902eab1c91a
