[INFO] cloning repository https://github.com/Adoni5/cnv_from_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/cnv_from_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c537c911efb519f10579a1dab8612025edf0c1ad
[INFO] testing Adoni5/cnv_from_bam against master#d98a5da813da67eb189387b8ccfb73cf481275d8+rustflags=-Copt-level=3 for pr-138759
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain d98a5da813da67eb189387b8ccfb73cf481275d8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 89 packages to latest Rust 1.90.0-nightly compatible versions
[INFO] [stderr]       Adding noodles v0.99.0 (available: v0.101.0)
[INFO] [stderr]       Adding noodles-bgzf v0.41.0 (available: v0.43.0)
[INFO] [stderr]       Adding pyo3 v0.25.1 (available: v0.26.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded pyo3-build-config v0.25.1
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded natord v1.0.9
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.25.1
[INFO] [stderr]   Downloaded unit-prefix v0.5.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.41.0
[INFO] [stderr]   Downloaded ctrlc v3.5.0
[INFO] [stderr]   Downloaded console v0.16.1
[INFO] [stderr]   Downloaded noodles v0.99.0
[INFO] [stderr]   Downloaded indicatif v0.18.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.6
[INFO] [stderr]   Downloaded noodles-bam v0.81.0
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.6
[INFO] [stderr]   Downloaded noodles-sam v0.77.0
[INFO] [stderr]   Downloaded lexical-util v1.0.7
[INFO] [stderr]   Downloaded lexical-write-float v1.0.6
[INFO] [stderr]   Downloaded libdeflate-sys v1.24.0
[INFO] [stderr]   Downloaded lexical-core v1.0.6
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.6
[INFO] [stderr]   Downloaded noodles-csi v0.49.0
[INFO] [stderr]   Downloaded nix v0.30.1
[INFO] [stderr]   Downloaded unicode-width v0.2.2
[INFO] [stderr]   Downloaded pyo3-ffi v0.25.1
[INFO] [stderr]   Downloaded libdeflater v1.24.0
[INFO] [stderr]   Downloaded target-lexicon v0.13.3
[INFO] [stderr]   Downloaded pyo3-macros v0.25.1
[INFO] [stderr]   Downloaded pyo3 v0.25.1
[INFO] [stderr]   Downloaded windows-sys v0.61.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1c13749566bccca89688a5dc48b0c4c8eddcc81ff614032efb861cd41162a388
[INFO] running `Command { std: "docker" "start" "-a" "1c13749566bccca89688a5dc48b0c4c8eddcc81ff614032efb861cd41162a388", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1c13749566bccca89688a5dc48b0c4c8eddcc81ff614032efb861cd41162a388", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1c13749566bccca89688a5dc48b0c4c8eddcc81ff614032efb861cd41162a388", kill_on_drop: false }`
[INFO] [stdout] 1c13749566bccca89688a5dc48b0c4c8eddcc81ff614032efb861cd41162a388
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4a06d23253b5351e4b0ccd6e8dab8d61f8c5b4ad0d70ada45ebaa6129643b35c
[INFO] running `Command { std: "docker" "start" "-a" "4a06d23253b5351e4b0ccd6e8dab8d61f8c5b4ad0d70ada45ebaa6129643b35c", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling cfg-if v1.0.3
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling zlib-rs v0.5.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling regex-automata v0.4.12
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling parking_lot_core v0.9.12
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling smallvec v1.15.1
[INFO] [stderr]    Compiling hashbrown v0.16.0
[INFO] [stderr]    Compiling cc v1.2.41
[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling autocfg v1.5.0
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling indexmap v2.11.4
[INFO] [stderr]    Compiling unit-prefix v0.5.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling pyo3-build-config v0.25.1
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling log v0.4.28
[INFO] [stderr]    Compiling natord v1.0.9
[INFO] [stderr]    Compiling libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling flate2 v1.1.4
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling console v0.16.1
[INFO] [stderr]    Compiling ctrlc v3.5.0
[INFO] [stderr]    Compiling libdeflate-sys v1.24.0
[INFO] [stderr]    Compiling indicatif v0.18.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-ffi v0.25.1
[INFO] [stderr]    Compiling pyo3 v0.25.1
[INFO] [stderr]    Compiling libdeflater v1.24.0
[INFO] [stderr]    Compiling noodles-bgzf v0.41.0
[INFO] [stderr]    Compiling noodles-csi v0.49.0
[INFO] [stderr]    Compiling noodles-sam v0.77.0
[INFO] [stderr]    Compiling noodles-bam v0.81.0
[INFO] [stderr]    Compiling noodles v0.99.0
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]    Compiling cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `PyList`
[INFO] [stdout]   --> src/lib.rs:71:27
[INFO] [stdout]    |
[INFO] [stdout] 71 | use pyo3::types::{PyDict, PyList};
[INFO] [stdout]    |                           ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 47s
[INFO] running `Command { std: "docker" "inspect" "4a06d23253b5351e4b0ccd6e8dab8d61f8c5b4ad0d70ada45ebaa6129643b35c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4a06d23253b5351e4b0ccd6e8dab8d61f8c5b4ad0d70ada45ebaa6129643b35c", kill_on_drop: false }`
[INFO] [stdout] 4a06d23253b5351e4b0ccd6e8dab8d61f8c5b4ad0d70ada45ebaa6129643b35c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Copt-level=3" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+d98a5da813da67eb189387b8ccfb73cf481275d8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c0b1fa75df51fd605035238cb10a823b42c394add0d7f595a7aff35db9ee969c
[INFO] running `Command { std: "docker" "start" "-a" "c0b1fa75df51fd605035238cb10a823b42c394add0d7f595a7aff35db9ee969c", kill_on_drop: false }`
[INFO] [stderr]    Compiling cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `PyList`
[INFO] [stdout]   --> src/lib.rs:71:27
[INFO] [stdout]    |
[INFO] [stdout] 71 | use pyo3::types::{PyDict, PyList};
[INFO] [stdout]    |                           ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/tmp/rustcvYDfmE/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libctrlc-375081785d67cd00.rlib,libnix-f05dd5fed2bc55fb.rlib}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/debug/deps/{libpyo3-796a85f181888fd8.rlib,libmemoffset-444276c809789b25.rlib,libpyo3_ffi-34377bd6ea8d4e6d.rlib,libunindent-033051ba88745145.rlib,libnoodles-0b940ed7de547689.rlib,libnoodles_bam-0cbc1b28ff0a23bd.rlib,libnoodles_sam-94b99d1f2ca1921c.rlib,libbitflags-6fbf4e159725b0e3.rlib,liblexical_core-60b3bc9622b0065e.rlib,liblexical_write_float-a4f592763cc94b74.rlib,liblexical_write_integer-27e79fbcbd368409.rlib,liblexical_parse_float-96e425726771c351.rlib,liblexical_parse_integer-1cebbd12cfe0e5c8.rlib,liblexical_util-ab2eb83eab4a9012.rlib,libnoodles_csi-58d1a2cff804c56b.rlib,libbit_vec-0c94a5b03986e10c.rlib,libnoodles_core-265b353b468a8e75.rlib,libnoodles_bgzf-df1e367068b82536.rlib,libbytes-ac1de41d75287ad9.rlib,libcrossbeam_channel-b41208a03565084e.rlib,liblibdeflater-1fc79986c455bac3.rlib,liblibdeflate_sys-f13b7cd93411e00a.rlib,libflate2-726524c913f2b2a4.rlib,liblibz_rs_sys-5d8827e7f9b063bc.rlib,libzlib_rs-aea158eb2060a95b.rlib,libcrc32fast-4bcee78994c19919.rlib,libindexmap-54c298ef2c719b26.rlib,libequivalent-75c815eea0f2c106.rlib,libhashbrown-766c8c2bc0fcc0d1.rlib,libbyteorder-6bb12dffd5e1b12b.rlib,libnatord-9b588af4a78be172.rlib,liblog-172961350bef6f8c.rlib,libbstr-e97c61ab0ad24883.rlib,libregex_automata-c3ba30dd351dbe91.rlib,libmemchr-38bf064dbe8703ff.rlib,libindicatif-c12189995c298c06.rlib,libportable_atomic-333f695a96aace18.rlib,librayon-94dec350cb2dc69f.rlib,librayon_core-33cb3699399ae521.rlib,libcrossbeam_deque-515d8498879230fc.rlib,libcrossbeam_epoch-b7db8a5edb82b101.rlib,libcrossbeam_utils-64542fc3947a68e3.rlib,libeither-c98ca44bffb58735.rlib,libunit_prefix-18c48cd396ccc670.rlib,libconsole-b5cbdb7ee83af2b2.rlib,libunicode_width-843c43b2fcd663c6.rlib,libonce_cell-18d8479b5814f5fc.rlib,libparking_lot_core-4695385b6c2df834.rlib,liblibc-74877022546e3356.rlib,libcfg_if-dc3b80a4800b54fb.rlib,libsmallvec-35d51144cc506ce1.rlib,libfnv-cad931e6de93593b.rlib}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,libcfg_if-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustcvYDfmE/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,-znostart-stop-gc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/libdeflate-sys-17a07ab8e9fadba0/out/lib" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/cnv_from_bam-c15846449f587729" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-Wl,-O1" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: undefined symbol: PyExc_SystemExit
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-0.25.1/src/exceptions.rs:282)
[INFO] [stdout]           >>>               /opt/rustwide/target/debug/deps/cnv_from_bam-c15846449f587729.cnv_from_bam.887eec53eda9e81f-cgu.00.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::hd499e6a8c37700b2)
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_RuntimeError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-0.25.1/src/exceptions.rs:282)
[INFO] [stdout]           >>>               /opt/rustwide/target/debug/deps/cnv_from_bam-c15846449f587729.cnv_from_bam.887eec53eda9e81f-cgu.00.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::hd8c6f91664e515a2)
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_FileExistsError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.01.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h030238cf3313da03) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_IsADirectoryError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.01.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h11a52b430219441f) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_TimeoutError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.01.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h38112ccecf4fa14f) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_SystemError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.02.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h781e8fe83523442c (.llvm.2066571674291006496)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.04.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h781e8fe83523442c (.llvm.12624279426136234079)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.00.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h781e8fe83523442c (.llvm.2204087975332365559)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced 1 more times
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: Py_IsInitialized
[INFO] [stdout]           >>> referenced by gil.rs:184 (src/gil.rs:184)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.05.rcgu.o:(std::sync::poison::once::Once::call_once_force::_$u7b$$u7b$closure$u7d$$u7d$::h275c6c13f11b06f9 (.llvm.4554641397710250683)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by gil.rs:184 (src/gil.rs:184)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.05.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h53939c10ab622ff4 (.llvm.4554641397710250683)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyUnicode_FromStringAndSize
[INFO] [stdout]           >>> referenced by string.rs:166 (src/types/string.rs:166)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.02.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h781e8fe83523442c (.llvm.2066571674291006496)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by string.rs:166 (src/types/string.rs:166)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.04.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::h781e8fe83523442c (.llvm.12624279426136234079)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by string.rs:184 (src/types/string.rs:184)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.09.rcgu.o:(pyo3::sync::GILOnceCell$LT$T$GT$::init::h62ed728e92cdd1fe) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced 6 more times
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: _Py_Dealloc
[INFO] [stdout]           >>> referenced by refcount.rs:0 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-ffi-0.25.1/src/refcount.rs:0)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.05.rcgu.o:(pyo3::gil::ReferencePool::update_counts::haa312f48f4d02672 (.llvm.4554641397710250683)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by refcount.rs:305 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-ffi-0.25.1/src/refcount.rs:305)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.05.rcgu.o:(pyo3::gil::register_decref::h3f59546239040ab1) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by refcount.rs:305 (/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/pyo3-ffi-0.25.1/src/refcount.rs:305)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.09.rcgu.o:(pyo3::sync::GILOnceCell$LT$T$GT$::init::h16219fd773642383) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced 30 more times
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyEval_RestoreThread
[INFO] [stdout]           >>> referenced by gil.rs:314 (src/gil.rs:314)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.05.rcgu.o:(_$LT$pyo3..gil..SuspendGIL$u20$as$u20$core..ops..drop..Drop$GT$::drop::h7aad2f38276407a9) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by gil.rs:314 (src/gil.rs:314)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.10.rcgu.o:(pyo3::marker::Python::allow_threads::h60c4f60bb077b85c) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_GetRaisedException
[INFO] [stdout]           >>> referenced by err_state.rs:190 (src/err/err_state.rs:190)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.10.rcgu.o:(std::sync::poison::once::Once::call_once::_$u7b$$u7b$closure$u7d$$u7d$::hca435294a0080b0c (.llvm.6403355399494860664)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by err_state.rs:190 (src/err/err_state.rs:190)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.01.rcgu.o:(pyo3::err::PyErr::take::h53c54a322f5a45e8) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyGILState_Release
[INFO] [stdout]           >>> referenced by gil.rs:243 (src/gil.rs:243)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.10.rcgu.o:(std::sync::poison::once::Once::call_once::_$u7b$$u7b$closure$u7d$$u7d$::hca435294a0080b0c (.llvm.6403355399494860664)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by gil.rs:243 (src/gil.rs:243)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.10.rcgu.o:(std::sync::poison::once::Once::call_once::_$u7b$$u7b$closure$u7d$$u7d$::hca435294a0080b0c (.llvm.6403355399494860664)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by gil.rs:243 (src/gil.rs:243)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.01.rcgu.o:(_$LT$pyo3..err..PyErr$u20$as$u20$core..fmt..Debug$GT$::fmt::h238d043c8e8632e0) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced 1 more times
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_BaseException
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.09.rcgu.o:(pyo3::sync::GILOnceCell$LT$T$GT$::init::h16219fd773642383) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_NewExceptionWithDoc
[INFO] [stdout]           >>> referenced by mod.rs:411 (src/err/mod.rs:411)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.09.rcgu.o:(pyo3::sync::GILOnceCell$LT$T$GT$::init::h16219fd773642383) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyEval_SaveThread
[INFO] [stdout]           >>> referenced by gil.rs:304 (src/gil.rs:304)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.10.rcgu.o:(pyo3::marker::Python::allow_threads::h60c4f60bb077b85c) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyUnicode_InternInPlace
[INFO] [stdout]           >>> referenced by string.rs:186 (src/types/string.rs:186)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.09.rcgu.o:(pyo3::sync::GILOnceCell$LT$T$GT$::init::h62ed728e92cdd1fe) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyExc_TypeError
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.07.rcgu.o:(pyo3::err::err_state::raise_lazy::h198c8dfdf37b9aca (.llvm.10233963977941876405)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           >>> referenced by exceptions.rs:282 (src/exceptions.rs:282)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.01.rcgu.o:(core::ops::function::FnOnce::call_once$u7b$$u7b$vtable.shim$u7d$$u7d$::hce1dd230d59a94d4 (.llvm.3511921405707147158)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_SetString
[INFO] [stdout]           >>> referenced by err_state.rs:357 (src/err/err_state.rs:357)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.07.rcgu.o:(pyo3::err::err_state::raise_lazy::h198c8dfdf37b9aca (.llvm.10233963977941876405)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyObject_Repr
[INFO] [stdout]           >>> referenced by any.rs:1514 (src/types/any.rs:1514)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.00.rcgu.o:(_$LT$pyo3..instance..Bound$LT$T$GT$$u20$as$u20$core..fmt..Debug$GT$::fmt::h603847cdb7929dfd) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: undefined symbol: PyErr_SetObject
[INFO] [stdout]           >>> referenced by err_state.rs:362 (src/err/err_state.rs:362)
[INFO] [stdout]           >>>               pyo3-796a85f181888fd8.pyo3.3f49b3674b95b11d-cgu.07.rcgu.o:(pyo3::err::err_state::raise_lazy::h198c8dfdf37b9aca (.llvm.10233963977941876405)) in archive /opt/rustwide/target/debug/deps/libpyo3-796a85f181888fd8.rlib
[INFO] [stdout]           
[INFO] [stdout]           rust-lld: error: too many errors emitted, stopping now (use --error-limit=0 to see all errors)
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `cnv_from_bam` (lib test) due to 1 previous error; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "c0b1fa75df51fd605035238cb10a823b42c394add0d7f595a7aff35db9ee969c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c0b1fa75df51fd605035238cb10a823b42c394add0d7f595a7aff35db9ee969c", kill_on_drop: false }`
[INFO] [stdout] c0b1fa75df51fd605035238cb10a823b42c394add0d7f595a7aff35db9ee969c
