[INFO] cloning repository https://github.com/m-nikolaidis/genometk
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/m-nikolaidis/genometk" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fm-nikolaidis%2Fgenometk", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fm-nikolaidis%2Fgenometk'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 076bfefef2063c18e5a5d7f4dfd3cfa4d45370ce
[INFO] checking m-nikolaidis/genometk against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fm-nikolaidis%2Fgenometk" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/m-nikolaidis/genometk on toolchain d534db0721b23cf977073bf4cd306dbf501e6b4d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/m-nikolaidis/genometk
[INFO] finished tweaking git repo https://github.com/m-nikolaidis/genometk
[INFO] tweaked toml for git repo https://github.com/m-nikolaidis/genometk written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/m-nikolaidis/genometk already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking m-nikolaidis/genometk against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fm-nikolaidis%2Fgenometk" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/m-nikolaidis/genometk on toolchain d534db0721b23cf977073bf4cd306dbf501e6b4d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/m-nikolaidis/genometk
[INFO] finished tweaking git repo https://github.com/m-nikolaidis/genometk
[INFO] tweaked toml for git repo https://github.com/m-nikolaidis/genometk written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/m-nikolaidis/genometk already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bytecount v0.6.3
[INFO] [stderr]   Downloaded getset v0.1.2
[INFO] [stderr]   Downloaded bio-types v1.0.0
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded clap_builder v4.3.19
[INFO] [stderr]   Downloaded clap v4.3.19
[INFO] [stderr]   Downloaded bio v1.3.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b2b300fab5df9c80e8874bc6527147911a143c5cd7999367afa62c4447cdacb9
[INFO] running `Command { std: "docker" "start" "-a" "b2b300fab5df9c80e8874bc6527147911a143c5cd7999367afa62c4447cdacb9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b2b300fab5df9c80e8874bc6527147911a143c5cd7999367afa62c4447cdacb9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b2b300fab5df9c80e8874bc6527147911a143c5cd7999367afa62c4447cdacb9", kill_on_drop: false }`
[INFO] [stdout] b2b300fab5df9c80e8874bc6527147911a143c5cd7999367afa62c4447cdacb9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] da8d7a116bff01d5b675b13d10501e445fe271be23fc234a046d8e5ede76d9e6
[INFO] running `Command { std: "docker" "start" "-a" "da8d7a116bff01d5b675b13d10501e445fe271be23fc234a046d8e5ede76d9e6", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.66
[INFO] [stderr]    Compiling libm v0.2.7
[INFO] [stderr]    Compiling num-traits v0.2.16
[INFO] [stderr]    Compiling libc v0.2.147
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling serde v1.0.180
[INFO] [stderr]    Compiling matrixmultiply v0.3.7
[INFO] [stderr]     Checking bytemuck v1.13.1
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.180
[INFO] [stderr]    Compiling rustix v0.38.4
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking linux-raw-sys v0.4.5
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking bitflags v2.3.3
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking regex-syntax v0.7.4
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking anstyle-parse v0.2.1
[INFO] [stderr]     Checking anstyle v1.0.1
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]     Checking anstyle-query v1.0.0
[INFO] [stderr]     Checking either v1.9.0
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking aho-corasick v1.0.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking clap_lex v0.5.0
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]    Compiling camino v1.1.6
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking anyhow v1.0.72
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking wide v0.7.11
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking once_cell v1.18.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]    Compiling quote v1.0.32
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking fastrand v2.0.0
[INFO] [stderr]    Compiling syn v2.0.28
[INFO] [stderr]     Checking getrandom v0.2.10
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking rayon-core v1.11.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking is-terminal v0.4.9
[INFO] [stderr]     Checking petgraph v0.6.3
[INFO] [stderr]     Checking anstream v0.3.2
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking clap_builder v4.3.19
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rayon v1.7.0
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking ordered-float v3.7.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking regex-automata v0.3.4
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking regex v1.9.1
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.44
[INFO] [stderr]    Compiling clap_derive v4.3.12
[INFO] [stderr]    Compiling strum_macros v0.25.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking thiserror v1.0.44
[INFO] [stderr]     Checking bio-types v1.0.0
[INFO] [stderr]     Checking clap v4.3.19
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.3.1
[INFO] [stderr]     Checking genometk v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `remove_file`
[INFO] [stdout]  --> src/generate.rs:3:21
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::fs::{File, remove_file};
[INFO] [stdout]   |                     ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 16.72s
[INFO] running `Command { std: "docker" "inspect" "da8d7a116bff01d5b675b13d10501e445fe271be23fc234a046d8e5ede76d9e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "da8d7a116bff01d5b675b13d10501e445fe271be23fc234a046d8e5ede76d9e6", kill_on_drop: false }`
[INFO] [stdout] da8d7a116bff01d5b675b13d10501e445fe271be23fc234a046d8e5ede76d9e6