[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 68561c038810b2d775bd12f37adfd40176eb6138
[INFO] checking informationsea/sequencetoolkit against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] error: unable to write file bamutils/testdata/bin/bwa-mac
[INFO] [stderr] error: unable to write file bamutils/testdata/create.sh
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.bam
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.bam.bai
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.cram
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.cram.crai
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.fastq
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.sam
[INFO] [stderr] error: unable to write file bamutils/testdata/known_variants.vcf
[INFO] [stderr] error: unable to write file bamutils/testdata/known_variants.vcf.gz
[INFO] [stderr] error: unable to write file bamutils/testdata/known_variants.vcf.gz.csi
[INFO] [stderr] fatal: cannot create directory at 'bamutils/testdata/ref': No space left on device
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 
[INFO] checking informationsea/sequencetoolkit against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] error: unable to write file bamutils/testdata/bin/bwa-mac
[INFO] [stderr] error: unable to write file bamutils/testdata/create.sh
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.bam
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.bam.bai
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.cram
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.cram.crai
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.fastq
[INFO] [stderr] error: unable to write file bamutils/testdata/demo1.sam
[INFO] [stderr] error: unable to write file bamutils/testdata/known_variants.vcf
[INFO] [stderr] error: unable to write file bamutils/testdata/known_variants.vcf.gz
[INFO] [stderr] error: unable to write file bamutils/testdata/known_variants.vcf.gz.csi
[INFO] [stderr] fatal: cannot create directory at 'bamutils/testdata/ref': No space left on device
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 
[INFO] checking informationsea/sequencetoolkit against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] fatal: cannot create directory at 'bam2fastq/src': No space left on device
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 
[INFO] checking informationsea/sequencetoolkit against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] [stderr] fatal: cannot create directory at 'bam2fastq/src': No space left on device
[INFO] [stderr] warning: Clone succeeded, but checkout failed.
[INFO] [stderr] You can inspect what was checked out with 'git status'
[INFO] [stderr] and retry with 'git restore --source=HEAD :/'
[INFO] [stderr] 
[INFO] checking informationsea/sequencetoolkit against try#d534db0721b23cf977073bf4cd306dbf501e6b4d for pr-138499
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain d534db0721b23cf977073bf4cd306dbf501e6b4d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded temp-file v0.1.8
[INFO] [stderr]   Downloaded bio-types v1.0.3
[INFO] [stderr]   Downloaded autocompress v0.6.0
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded rust-htslib v0.44.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4bbae9c4a63c3d9ec6b8cf678a4de9fab7eacdf86a2ca5c2d9b517efc6322590
[INFO] running `Command { std: "docker" "start" "-a" "4bbae9c4a63c3d9ec6b8cf678a4de9fab7eacdf86a2ca5c2d9b517efc6322590", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4bbae9c4a63c3d9ec6b8cf678a4de9fab7eacdf86a2ca5c2d9b517efc6322590", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4bbae9c4a63c3d9ec6b8cf678a4de9fab7eacdf86a2ca5c2d9b517efc6322590", kill_on_drop: false }`
[INFO] [stdout] 4bbae9c4a63c3d9ec6b8cf678a4de9fab7eacdf86a2ca5c2d9b517efc6322590
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+d534db0721b23cf977073bf4cd306dbf501e6b4d" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 93373873eaec7665906808684fd8e1d19b89e394b578bd8ca8c51bdfc16b9fbb
[INFO] running `Command { std: "docker" "start" "-a" "93373873eaec7665906808684fd8e1d19b89e394b578bd8ca8c51bdfc16b9fbb", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling pkg-config v0.3.30
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling thiserror v1.0.63
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.204
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]     Checking adler v1.0.2
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/thiserror-bc6e61dc79984a77/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/crossbeam-utils-14b208520aae07ee/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/version_check-9366c3982144fcbd/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/typenum-029e1058a132b731/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/serde-34d1be527f3bb62a/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/syn-3ec28d2051950d4a/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/adler-a7e0157af43bde91/invoked.timestamp`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmetafgcaqS"
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `cfg-if` (lib) due to 1 previous error
[INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/build/libm-8f6dbdd5e261eaf8/rmetaIFvMYe"
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmeta9m3bXb"
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libm` (build script) due to 1 previous error
[INFO] [stderr] error: could not compile `unicode-ident` (lib) due to 1 previous error
[INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/build/proc-macro2-8c68ecd7d948d827/rmeta2kDmsw"
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `proc-macro2` (build script) due to 1 previous error
[INFO] [stderr] rustc-LLVM ERROR: IO failure on output stream: No space left on device
[INFO] [stderr] error: could not compile `libc` (build script)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   failed to parse process output: `/opt/rustwide/rustup-home/toolchains/d534db0721b23cf977073bf4cd306dbf501e6b4d/bin/rustc --crate-name build_script_build --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/libc-0.2.155/build.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("align", "const-extern-fn", "default", "extra_traits", "rustc-dep-of-std", "rustc-std-workspace-core", "std", "use_std"))' -C metadata=e4a76fef35959cce -C extra-filename=-136b98220ee637d0 --out-dir /opt/rustwide/target/debug/build/libc-136b98220ee637d0 -L dependency=/opt/rustwide/target/debug/deps --cap-lints allow --cap-lints=forbid` (exit status: 101)
[INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmetaVSilp5"
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `pkg-config` (lib) due to 1 previous error
[INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmetaFg0ORI/lib.rmeta`: No space left on device (os error 28)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `autocfg` (lib) due to 1 previous error
[INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmeta1SLMCR/lib.rmeta`: No space left on device (os error 28)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `memchr` (lib) due to 1 previous error
[INFO] running `Command { std: "docker" "inspect" "93373873eaec7665906808684fd8e1d19b89e394b578bd8ca8c51bdfc16b9fbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "93373873eaec7665906808684fd8e1d19b89e394b578bd8ca8c51bdfc16b9fbb", kill_on_drop: false }`
[INFO] [stdout] 93373873eaec7665906808684fd8e1d19b89e394b578bd8ca8c51bdfc16b9fbb