[INFO] fetching crate minimap2 0.1.23+minimap2.2.28... [INFO] checking minimap2-0.1.23+minimap2.2.28 against master#9c67cecd12d79f1bbc00a74f70e7ef9fff086a5a for pr-138458 [INFO] extracting crate minimap2 0.1.23+minimap2.2.28 into /workspace/builds/worker-0-tc1/source [INFO] validating manifest of crates.io crate minimap2 0.1.23+minimap2.2.28 on toolchain 9c67cecd12d79f1bbc00a74f70e7ef9fff086a5a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9c67cecd12d79f1bbc00a74f70e7ef9fff086a5a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate minimap2 0.1.23+minimap2.2.28 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate minimap2 0.1.23+minimap2.2.28 [INFO] tweaked toml for crates.io crate minimap2 0.1.23+minimap2.2.28 written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] crate crates.io crate minimap2 0.1.23+minimap2.2.28 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9c67cecd12d79f1bbc00a74f70e7ef9fff086a5a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `0.1.21+minimap2.2.28` for dependency `minimap2-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+9c67cecd12d79f1bbc00a74f70e7ef9fff086a5a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cfec310a9a2f3f7e18459da45c3f35a52f090afb293d54dc14deeda900e9b803 [INFO] running `Command { std: "docker" "start" "-a" "cfec310a9a2f3f7e18459da45c3f35a52f090afb293d54dc14deeda900e9b803", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cfec310a9a2f3f7e18459da45c3f35a52f090afb293d54dc14deeda900e9b803", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cfec310a9a2f3f7e18459da45c3f35a52f090afb293d54dc14deeda900e9b803", kill_on_drop: false }` [INFO] [stdout] cfec310a9a2f3f7e18459da45c3f35a52f090afb293d54dc14deeda900e9b803 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+9c67cecd12d79f1bbc00a74f70e7ef9fff086a5a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7e90fae93b2b8c678bff0cac023d49e0fa1a493b9dc5a1c5a23d12cce6cc3323 [INFO] running `Command { std: "docker" "start" "-a" "7e90fae93b2b8c678bff0cac023d49e0fa1a493b9dc5a1c5a23d12cce6cc3323", kill_on_drop: false }` [INFO] [stderr] warning: version requirement `0.1.21+minimap2.2.28` for dependency `minimap2-sys` includes semver metadata which will be ignored, removing the metadata is recommended to avoid confusion [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Checking anstyle-parse v0.2.6 [INFO] [stderr] Checking anstyle-query v1.1.2 [INFO] [stderr] Compiling cc v1.2.7 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking colorchoice v1.0.3 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking anstyle v1.0.10 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking anstream v0.6.18 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking needletail v0.6.1 [INFO] [stderr] Checking clap_builder v4.5.23 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking crossbeam-queue v0.3.12 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Checking crossbeam-channel v0.5.14 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Compiling syn v2.0.94 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling minimap2-sys v0.1.21+minimap2.2.28 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Checking clap v4.5.23 [INFO] [stderr] Checking minimap2 v0.1.23+minimap2.2.28 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `km` [INFO] [stdout] --> src/lib.rs:997:17 [INFO] [stdout] | [INFO] [stdout] 997 | let km: *mut c_void = unsafe { mm_tbuf_get_km(buf.get_buf()) }; [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_km` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `state` is never read [INFO] [stdout] --> src/lib.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 300 | pub struct Aligner { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 320 | state: S, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Aligner` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `km` [INFO] [stdout] --> src/lib.rs:997:17 [INFO] [stdout] | [INFO] [stdout] 997 | let km: *mut c_void = unsafe { mm_tbuf_get_km(buf.get_buf()) }; [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_km` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `FastxReader` [INFO] [stdout] --> examples/rayon.rs:2:36 [INFO] [stdout] | [INFO] [stdout] 2 | use needletail::{parse_fastx_file, FastxReader}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aligner` [INFO] [stdout] --> src/lib.rs:2274:17 [INFO] [stdout] | [INFO] [stdout] 2274 | let aligner = aligner [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_aligner` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `state` is never read [INFO] [stdout] --> src/lib.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 300 | pub struct Aligner { [INFO] [stdout] | ------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 320 | state: S, [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Aligner` has a derived impl for the trait `Clone`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `record` [INFO] [stdout] --> examples/channels.rs:129:37 [INFO] [stdout] | [INFO] [stdout] 129 | Some(WorkQueue::Result((record, alignments))) => { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_record` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.49s [INFO] running `Command { std: "docker" "inspect" "7e90fae93b2b8c678bff0cac023d49e0fa1a493b9dc5a1c5a23d12cce6cc3323", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7e90fae93b2b8c678bff0cac023d49e0fa1a493b9dc5a1c5a23d12cce6cc3323", kill_on_drop: false }` [INFO] [stdout] 7e90fae93b2b8c678bff0cac023d49e0fa1a493b9dc5a1c5a23d12cce6cc3323