[INFO] cloning repository https://github.com/joyliu-q/rust-genomics
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/joyliu-q/rust-genomics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a62b7e31b41dd1efe396e5ee25b420c4b5bdb887
[INFO] checking joyliu-q/rust-genomics against master#249cb84316401daf040832cdbb8a45e0f5ab6af8 for pr-138438
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjoyliu-q%2Frust-genomics" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/joyliu-q/rust-genomics on toolchain 249cb84316401daf040832cdbb8a45e0f5ab6af8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+249cb84316401daf040832cdbb8a45e0f5ab6af8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/joyliu-q/rust-genomics
[INFO] finished tweaking git repo https://github.com/joyliu-q/rust-genomics
[INFO] tweaked toml for git repo https://github.com/joyliu-q/rust-genomics written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/joyliu-q/rust-genomics already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+249cb84316401daf040832cdbb8a45e0f5ab6af8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+249cb84316401daf040832cdbb8a45e0f5ab6af8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c0a6764e62600fb7e2dc73e9b077ed9eeb8b016a34a3501997d8d13d2c6365b8
[INFO] running `Command { std: "docker" "start" "-a" "c0a6764e62600fb7e2dc73e9b077ed9eeb8b016a34a3501997d8d13d2c6365b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c0a6764e62600fb7e2dc73e9b077ed9eeb8b016a34a3501997d8d13d2c6365b8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c0a6764e62600fb7e2dc73e9b077ed9eeb8b016a34a3501997d8d13d2c6365b8", kill_on_drop: false }`
[INFO] [stdout] c0a6764e62600fb7e2dc73e9b077ed9eeb8b016a34a3501997d8d13d2c6365b8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+249cb84316401daf040832cdbb8a45e0f5ab6af8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 19fc3351d62250876692857da950a16546a48972d8b2501ad46687e2e2c24a8c
[INFO] running `Command { std: "docker" "start" "-a" "19fc3351d62250876692857da950a16546a48972d8b2501ad46687e2e2c24a8c", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling serde v1.0.117
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling rayon-core v1.8.1
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling serde_json v1.0.59
[INFO] [stderr]     Checking itoa v0.4.6
[INFO] [stderr]    Compiling syn v1.0.45
[INFO] [stderr]     Checking ppv-lite86 v0.2.9
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking unicode-width v0.1.8
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking regex-syntax v0.6.20
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]     Checking half v1.6.0
[INFO] [stderr]     Checking same-file v1.0.6
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking walkdir v2.3.1
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking oorandom v11.1.2
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling rustc_version v0.2.3
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling rayon v1.4.1
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]    Compiling cast v0.2.3
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking criterion-plot v0.4.3
[INFO] [stderr]     Checking regex v1.4.1
[INFO] [stderr]     Checking plotters v0.2.15
[INFO] [stderr]     Checking rust-genomics v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `damerau_levenshtein`, `hamming`, `jaro_winkler`, `jaro`, `levenshtein`, `normalized_damerau_levenshtein`, `osa_distance`, and `sorensen_dice`
[INFO] [stdout]   --> src/lib.rs:13:14
[INFO] [stdout]    |
[INFO] [stdout] 13 | use strsim::{hamming, levenshtein, normalized_levenshtein, osa_distance,
[INFO] [stdout]    |              ^^^^^^^  ^^^^^^^^^^^                          ^^^^^^^^^^^^
[INFO] [stdout] 14 |              damerau_levenshtein, normalized_damerau_levenshtein, jaro,
[INFO] [stdout]    |              ^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  ^^^^
[INFO] [stdout] 15 |              jaro_winkler, sorensen_dice};
[INFO] [stdout]    |              ^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]  --> src/lib.rs:7:15
[INFO] [stdout]   |
[INFO] [stdout] 7 | use std::io::{Write, BufReader, BufRead};
[INFO] [stdout]   |               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/lib.rs:259:13
[INFO] [stdout]     |
[INFO] [stdout] 259 |         let mut diff = 0;
[INFO] [stdout]     |             ----^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `Nucleotide` is never used
[INFO] [stdout]   --> src/lib.rs:23:6
[INFO] [stdout]    |
[INFO] [stdout] 23 | enum Nucleotide {
[INFO] [stdout]    |      ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `to_char` and `index_to_nt` are never used
[INFO] [stdout]   --> src/lib.rs:30:8
[INFO] [stdout]    |
[INFO] [stdout] 29 | impl Nucleotide {
[INFO] [stdout]    | --------------- associated items in this implementation
[INFO] [stdout] 30 |     fn to_char(&self) -> char {
[INFO] [stdout]    |        ^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 38 |     fn index_to_nt(index: usize) -> Result<Nucleotide, Error> {
[INFO] [stdout]    |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `check` is never used
[INFO] [stdout]   --> src/lib.rs:84:8
[INFO] [stdout]    |
[INFO] [stdout] 68 | impl Sequence {
[INFO] [stdout]    | ------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 84 |     fn check(&self) -> bool {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:309:9
[INFO] [stdout]     |
[INFO] [stdout] 309 |         write!(f, "File Name: {}\n", self.name);
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `Result` that must be used
[INFO] [stdout]    --> src/lib.rs:311:13
[INFO] [stdout]     |
[INFO] [stdout] 311 |             write!(f, "Header: {}\nSequence: {}\n\n", record.header, record.sequence);
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this `Result` may be an `Err` variant, which should be handled
[INFO] [stdout]     = note: this warning originates in the macro `write` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Sequence`
[INFO] [stdout]  --> src/main.rs:1:21
[INFO] [stdout]   |
[INFO] [stdout] 1 | use rust_genomics::{Sequence, FASTA};
[INFO] [stdout]   |                     ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking bstr v0.2.14
[INFO] [stderr]     Checking serde_cbor v0.11.1
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking tinytemplate v1.1.0
[INFO] [stderr] rustc-LLVM ERROR: IO failure on output stream: No space left on device
[INFO] [stderr] error: could not compile `serde_derive` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   No space left on device (os error 28)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   failed to parse process output: `/opt/rustwide/rustup-home/toolchains/249cb84316401daf040832cdbb8a45e0f5ab6af8/bin/rustc --crate-name serde_derive --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/serde_derive-1.0.117/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "deserialize_in_place"))' -C metadata=1ee6a69d602d1c8e -C extra-filename=-b3cb51f2ff9c4448 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-7bc2d94d3bd91595.rlib --extern quote=/opt/rustwide/target/debug/deps/libquote-48a03df6781b387b.rlib --extern syn=/opt/rustwide/target/debug/deps/libsyn-2db0d7b50f64372f.rlib --extern proc_macro --cap-lints allow --cap-lints=forbid --cfg underscore_consts` (exit status: 101)
[INFO] running `Command { std: "docker" "inspect" "19fc3351d62250876692857da950a16546a48972d8b2501ad46687e2e2c24a8c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "19fc3351d62250876692857da950a16546a48972d8b2501ad46687e2e2c24a8c", kill_on_drop: false }`
[INFO] [stdout] 19fc3351d62250876692857da950a16546a48972d8b2501ad46687e2e2c24a8c