[INFO] cloning repository https://github.com/brainstorm/htsget-indexer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/brainstorm/htsget-indexer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 182650b6518cdeefad31ab1ca4aa5cb1666e0ab2
[INFO] checking brainstorm/htsget-indexer against master#90384941aae4ea38de00e4702b50757e9b882a19 for pr-138340
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbrainstorm%2Fhtsget-indexer" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/brainstorm/htsget-indexer on toolchain 90384941aae4ea38de00e4702b50757e9b882a19
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/brainstorm/htsget-indexer
[INFO] finished tweaking git repo https://github.com/brainstorm/htsget-indexer
[INFO] tweaked toml for git repo https://github.com/brainstorm/htsget-indexer written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 129 packages to latest compatible versions
[INFO] [stderr]       Adding rust-htslib v0.26.1 (available: v0.49.0)
[INFO] [stderr]       Adding snafu v0.6.10 (available: v0.8.5)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded snafu v0.5.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded snafu-derive v0.5.0
[INFO] [stderr]   Downloaded rust-htslib v0.26.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7d885756c60694415bd90698e3c2ac1f3c546c8d95b6afc95f9afdddc1ae95d7
[INFO] running `Command { std: "docker" "start" "-a" "7d885756c60694415bd90698e3c2ac1f3c546c8d95b6afc95f9afdddc1ae95d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7d885756c60694415bd90698e3c2ac1f3c546c8d95b6afc95f9afdddc1ae95d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7d885756c60694415bd90698e3c2ac1f3c546c8d95b6afc95f9afdddc1ae95d7", kill_on_drop: false }`
[INFO] [stdout] 7d885756c60694415bd90698e3c2ac1f3c546c8d95b6afc95f9afdddc1ae95d7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a61f79ff1d168d6a14314b9b3f18471b1fbd6e1fba833a93ba08605dfc55f577
[INFO] running `Command { std: "docker" "start" "-a" "a61f79ff1d168d6a14314b9b3f18471b1fbd6e1fba833a93ba08605dfc55f577", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]     Checking litemap v0.7.5
[INFO] [stderr]     Checking writeable v0.5.5
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking icu_locid_transform_data v1.5.0
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking icu_properties_data v1.5.0
[INFO] [stderr]    Compiling unicode-width v0.1.14
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]     Checking utf16_iter v1.0.5
[INFO] [stderr]    Compiling cc v1.2.16
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]     Checking icu_normalizer_data v1.5.0
[INFO] [stderr]    Compiling object v0.36.7
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]     Checking write16 v1.0.0
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling rustversion v1.0.20
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]    Compiling log v0.4.26
[INFO] [stderr]     Checking smallvec v1.14.0
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling quote v1.0.39
[INFO] [stderr]     Checking gimli v0.31.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]     Checking miniz_oxide v0.8.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking rustc-demangle v0.1.24
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling cexpr v0.3.6
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking itoa v1.0.15
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking ryu v1.0.20
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking addr2line v0.24.2
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking backtrace v0.3.74
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking snafu v0.5.0
[INFO] [stderr]     Checking zerovec v0.10.4
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]     Checking tinystr v0.7.6
[INFO] [stderr]     Checking icu_collections v1.5.0
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_locid v1.5.0
[INFO] [stderr]     Checking icu_provider v1.5.0
[INFO] [stderr]     Checking icu_locid_transform v1.5.0
[INFO] [stderr]     Checking icu_properties v1.5.1
[INFO] [stderr]    Compiling rust-htslib v0.26.1
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking htsget-indexer v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.16s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: cexpr v0.3.6, nom v4.2.3
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "a61f79ff1d168d6a14314b9b3f18471b1fbd6e1fba833a93ba08605dfc55f577", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a61f79ff1d168d6a14314b9b3f18471b1fbd6e1fba833a93ba08605dfc55f577", kill_on_drop: false }`
[INFO] [stdout] a61f79ff1d168d6a14314b9b3f18471b1fbd6e1fba833a93ba08605dfc55f577