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[INFO] validating manifest of git repo https://github.com/Luke-ebbis/rdfbio on toolchain 90384941aae4ea38de00e4702b50757e9b882a19 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/Luke-ebbis/rdfbio [INFO] finished tweaking git repo https://github.com/Luke-ebbis/rdfbio [INFO] tweaked toml for git repo https://github.com/Luke-ebbis/rdfbio written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/Luke-ebbis/rdfbio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+90384941aae4ea38de00e4702b50757e9b882a19" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... 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[stdout] warning: derive helper attribute is used before it is introduced [INFO] [stdout] --> src/biordf/omicsdi.rs:337:7 [INFO] [stdout] | [INFO] [stdout] 337 | #[ld(prefix("ex" = "http://example.org/verbs/"))] [INFO] [stdout] | ^^ [INFO] [stdout] ... [INFO] [stdout] 340 | linked_data::Serialize, linked_data::Deserialize, Deserialize, Serialize, Debug, Clone, [INFO] [stdout] | ---------------------- the attribute is introduced here [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79202 [INFO] [stdout] = note: `#[warn(legacy_derive_helpers)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Request` [INFO] [stdout] --> src/biordf/core.rs:21:19 [INFO] [stdout] | [INFO] [stdout] 21 | use reqwest::{Request, StatusCode}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/biordf/core.rs:22:9 [INFO] [stdout] | [INFO] [stdout] 22 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::clone` [INFO] [stdout] --> src/biordf/core.rs:224:9 [INFO] [stdout] | [INFO] [stdout] 224 | use std::clone; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/biordf/core.rs:257:61 [INFO] [stdout] | [INFO] [stdout] 253 | impl<'a, T> Pager<'a, T> [INFO] [stdout] | -- lifetime `'a` declared here [INFO] [stdout] ... [INFO] [stdout] 257 | pub fn new(search: &'a T, size: SearchSize) -> Pager { [INFO] [stdout] | ^ this elided lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(elided_named_lifetimes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: derive helper attribute is used before it is introduced [INFO] [stdout] --> src/biordf/omicsdi.rs:337:7 [INFO] [stdout] | [INFO] [stdout] 337 | #[ld(prefix("ex" = "http://example.org/verbs/"))] [INFO] [stdout] | ^^ [INFO] [stdout] ... [INFO] [stdout] 340 | linked_data::Serialize, linked_data::Deserialize, Deserialize, Serialize, Debug, Clone, [INFO] [stdout] | ---------------------- the attribute is introduced here [INFO] [stdout] | [INFO] [stdout] = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release! [INFO] [stdout] = note: for more information, see issue #79202 [INFO] [stdout] = note: `#[warn(legacy_derive_helpers)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Request` [INFO] [stdout] --> src/biordf/core.rs:21:19 [INFO] [stdout] | [INFO] [stdout] 21 | use reqwest::{Request, StatusCode}; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::clone` [INFO] [stdout] --> src/biordf/core.rs:224:9 [INFO] [stdout] | [INFO] [stdout] 224 | use std::clone; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: elided lifetime has a name [INFO] [stdout] --> src/biordf/core.rs:257:61 [INFO] [stdout] | [INFO] [stdout] 253 | impl<'a, T> Pager<'a, T> [INFO] [stdout] | -- lifetime `'a` declared here [INFO] [stdout] ... [INFO] [stdout] 257 | pub fn new(search: &'a T, size: SearchSize) -> Pager { [INFO] [stdout] | ^ this elided lifetime gets resolved as `'a` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(elided_named_lifetimes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Endpoint` and `PagerIterator` [INFO] [stdout] --> src/biordf/core.rs:451:42 [INFO] [stdout] | [INFO] [stdout] 451 | use crate::biordf::core::searching::{Endpoint, Pageable, Pager, PagerIterator, SearchSize}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `data::OmicsDiResponse` [INFO] [stdout] --> src/biordf/core.rs:453:54 [INFO] [stdout] | [INFO] [stdout] 453 | use crate::biordf::omicsdi::{api::SearchBuilder, data::OmicsDiResponse}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `dataset::DatasetView` [INFO] [stdout] --> src/biordf/core.rs:563:21 [INFO] [stdout] | [INFO] [stdout] 563 | use rdf_types::{dataset::DatasetView, static_iref::iri}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/biordf/core.rs:423:9 [INFO] [stdout] | [INFO] [stdout] 423 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:45:39 [INFO] [stdout] | [INFO] [stdout] 45 | Databases::BioProject(id) => "bioproject", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:46:34 [INFO] [stdout] | [INFO] [stdout] 46 | Databases::Pride(id) => "pride.project", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `db_string` [INFO] [stdout] --> src/biordf/core.rs:51:17 [INFO] [stdout] | [INFO] [stdout] 51 | let db_string = self.namespace(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_db_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `step` [INFO] [stdout] --> src/biordf/core.rs:274:21 [INFO] [stdout] | [INFO] [stdout] 274 | let step = target; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_step` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `end` [INFO] [stdout] --> src/biordf/core.rs:410:34 [INFO] [stdout] | [INFO] [stdout] 410 | fn set(self, start: i32, end: i32, step: i32) -> Self { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/biordf/core.rs:423:9 [INFO] [stdout] | [INFO] [stdout] 423 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:45:39 [INFO] [stdout] | [INFO] [stdout] 45 | Databases::BioProject(id) => "bioproject", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:46:34 [INFO] [stdout] | [INFO] [stdout] 46 | Databases::Pride(id) => "pride.project", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `db_string` [INFO] [stdout] --> src/biordf/core.rs:51:17 [INFO] [stdout] | [INFO] [stdout] 51 | let db_string = self.namespace(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_db_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `step` [INFO] [stdout] --> src/biordf/core.rs:274:21 [INFO] [stdout] | [INFO] [stdout] 274 | let step = target; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_step` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `end` [INFO] [stdout] --> src/biordf/core.rs:410:34 [INFO] [stdout] | [INFO] [stdout] 410 | fn set(self, start: i32, end: i32, step: i32) -> Self { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out` [INFO] [stdout] --> src/biordf/core.rs:487:13 [INFO] [stdout] | [INFO] [stdout] 487 | let out = r.total_hits()?; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `results` [INFO] [stdout] --> src/biordf/core.rs:493:17 [INFO] [stdout] | [INFO] [stdout] 493 | let results = part.search()?; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_results` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `URL`, `new`, `get_id`, `namespace`, and `to_identifier` are never used [INFO] [stdout] --> src/biordf/core.rs:27:15 [INFO] [stdout] | [INFO] [stdout] 26 | impl Databases<'_> { [INFO] [stdout] | ------------------ associated items in this implementation [INFO] [stdout] 27 | const URL: &'static str = "http://identifiers.org/"; [INFO] [stdout] | ^^^ [INFO] [stdout] 28 | fn new<'a>(namespace: &'a str, id: &'a str) -> Databases<'a> { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 36 | fn get_id(self) -> String { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 43 | fn namespace(self) -> &'static str { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 50 | fn to_identifier(&self) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_identifier_resolving` is never used [INFO] [stdout] --> src/biordf/core.rs:82:8 [INFO] [stdout] | [INFO] [stdout] 82 | fn check_identifier_resolving(x: &str) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/biordf/omicsdi.rs:488:13 [INFO] [stdout] | [INFO] [stdout] 488 | let mut x = binding.start(1).size(10).query("s"); [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `core::panic` [INFO] [stdout] --> src/main.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use core::panic; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `core::panic` [INFO] [stdout] --> src/main.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use core::panic; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::any::Any` [INFO] [stdout] --> src/main.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::any::Any; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rdf_types::dataset::BTreeDataset` [INFO] [stdout] --> src/main.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rdf_types::dataset::BTreeDataset; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Pageable` [INFO] [stdout] --> src/main.rs:7:45 [INFO] [stdout] | [INFO] [stdout] 7 | use rdfbio::biordf::core::searching::{page, Pageable, Pager}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `DataSet`, `OmicsDiResponse`, and `self` [INFO] [stdout] --> src/main.rs:8:37 [INFO] [stdout] | [INFO] [stdout] 8 | use rdfbio::biordf::omicsdi::data::{self, DataSet, OmicsDiResponse}; [INFO] [stdout] | ^^^^ ^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::any::Any` [INFO] [stdout] --> src/main.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::any::Any; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rdf_types::dataset::BTreeDataset` [INFO] [stdout] --> src/main.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use rdf_types::dataset::BTreeDataset; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Pageable` [INFO] [stdout] --> src/main.rs:7:45 [INFO] [stdout] | [INFO] [stdout] 7 | use rdfbio::biordf::core::searching::{page, Pageable, Pager}; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `DataSet`, `OmicsDiResponse`, and `self` [INFO] [stdout] --> src/main.rs:8:37 [INFO] [stdout] | [INFO] [stdout] 8 | use rdfbio::biordf::omicsdi::data::{self, DataSet, OmicsDiResponse}; [INFO] [stdout] | ^^^^ ^^^^^^^ ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `builder` [INFO] [stdout] --> src/main.rs:77:21 [INFO] [stdout] | [INFO] [stdout] 77 | let mut builder = binding.clone(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_builder` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | let mut builder = binding.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:80:17 [INFO] [stdout] | [INFO] [stdout] 80 | let mut pager: Pager = Pager::new( [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `builder` [INFO] [stdout] --> src/main.rs:77:21 [INFO] [stdout] | [INFO] [stdout] 77 | let mut builder = binding.clone(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_builder` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:77:17 [INFO] [stdout] | [INFO] [stdout] 77 | let mut builder = binding.clone(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:80:17 [INFO] [stdout] | [INFO] [stdout] 80 | let mut pager: Pager = Pager::new( [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 4m 15s [INFO] running `Command { std: "docker" "inspect" "70d1cc64c74b97b484a39ad09594a77d2380925b58a7ea25b3979e633b61d508", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "70d1cc64c74b97b484a39ad09594a77d2380925b58a7ea25b3979e633b61d508", kill_on_drop: false }` [INFO] [stdout] 70d1cc64c74b97b484a39ad09594a77d2380925b58a7ea25b3979e633b61d508