[INFO] cloning repository https://github.com/davidlougheed/strkit_rust_ext
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/davidlougheed/strkit_rust_ext" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdavidlougheed%2Fstrkit_rust_ext", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdavidlougheed%2Fstrkit_rust_ext'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c4f3c93ee19dcf41398a977df52b2514f95f895c
[INFO] checking davidlougheed/strkit_rust_ext/c4f3c93ee19dcf41398a977df52b2514f95f895c against master#fd17deacce374a4185c882795be162e17b557050 for pr-138001
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdavidlougheed%2Fstrkit_rust_ext" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/davidlougheed/strkit_rust_ext on toolchain fd17deacce374a4185c882795be162e17b557050
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fd17deacce374a4185c882795be162e17b557050" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/davidlougheed/strkit_rust_ext
[INFO] finished tweaking git repo https://github.com/davidlougheed/strkit_rust_ext
[INFO] tweaked toml for git repo https://github.com/davidlougheed/strkit_rust_ext written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/davidlougheed/strkit_rust_ext already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+fd17deacce374a4185c882795be162e17b557050" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded parasail-rs v0.7.6
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded libdeflate-sys v1.23.0
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded libparasail-sys v0.1.9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+fd17deacce374a4185c882795be162e17b557050" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4abd87f1f879ba9b0842cd592e88fe91822b24c45af5cefc5284c00ef514609d
[INFO] running `Command { std: "docker" "start" "-a" "4abd87f1f879ba9b0842cd592e88fe91822b24c45af5cefc5284c00ef514609d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4abd87f1f879ba9b0842cd592e88fe91822b24c45af5cefc5284c00ef514609d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4abd87f1f879ba9b0842cd592e88fe91822b24c45af5cefc5284c00ef514609d", kill_on_drop: false }`
[INFO] [stdout] 4abd87f1f879ba9b0842cd592e88fe91822b24c45af5cefc5284c00ef514609d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:1680c8fbd8dfb46fcd6d22e546df16ab0e007457dc29fcd9e987cdd5077fd1af" "/opt/rustwide/cargo-home/bin/cargo" "+fd17deacce374a4185c882795be162e17b557050" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] be128ab082b047c5c670aad065d655c5ee5f5f038294856eff379f12d0b90075
[INFO] running `Command { std: "docker" "start" "-a" "be128ab082b047c5c670aad065d655c5ee5f5f038294856eff379f12d0b90075", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling prettyplease v0.2.29
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling rustix v0.38.43
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.15
[INFO] [stderr]    Compiling bitflags v2.8.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]     Checking writeable v0.5.5
[INFO] [stderr]    Compiling log v0.4.25
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking litemap v0.7.4
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling serde v1.0.217
[INFO] [stderr]     Checking icu_locid_transform_data v1.5.0
[INFO] [stderr]     Checking rawpointer v0.2.1
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[INFO] [stderr]    Compiling thiserror v1.0.69
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[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]    Compiling rustversion v1.0.19
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling syn v2.0.96
[INFO] [stderr]    Compiling pyo3-build-config v0.23.4
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]     Checking icu_normalizer_data v1.5.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]     Checking utf16_iter v1.0.5
[INFO] [stderr]     Checking write16 v1.0.0
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling cc v1.2.9
[INFO] [stderr]     Checking utf8_iter v1.0.4
[INFO] [stderr]     Checking wide v0.7.32
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
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[INFO] [stderr]    Compiling bv v0.11.1
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[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]     Checking hashbrown v0.15.2
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking form_urlencoded v1.2.1
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking bit-vec v0.8.0
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[INFO] [stderr]     Checking custom_derive v0.1.7
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[INFO] [stderr]     Checking indexmap v2.7.0
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking bit-set v0.8.0
[INFO] [stderr]     Checking ordered-float v4.6.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling pyo3-ffi v0.23.4
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling pyo3-macros-backend v0.23.4
[INFO] [stderr]    Compiling pyo3 v0.23.4
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking simba v0.8.1
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking rustc-hash v2.1.0
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]    Compiling libz-sys v1.1.21
[INFO] [stderr]    Compiling libdeflate-sys v1.23.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]     Checking petgraph v0.6.5
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.5
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.217
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking zerofrom v0.1.5
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking yoke v0.7.5
[INFO] [stderr]     Checking zerovec v0.10.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling pyo3-macros v0.23.4
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking tinystr v0.7.6
[INFO] [stderr]     Checking icu_collections v1.5.0
[INFO] [stderr]     Checking nalgebra v0.32.6
[INFO] [stderr]     Checking icu_locid v1.5.0
[INFO] [stderr]     Checking icu_provider v1.5.0
[INFO] [stderr]     Checking icu_locid_transform v1.5.0
[INFO] [stderr]     Checking icu_properties v1.5.1
[INFO] [stderr]     Checking multimap v0.10.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking numpy v0.23.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling libparasail-sys v0.1.9
[INFO] [stderr]     Checking icu_normalizer v1.5.0
[INFO] [stderr]     Checking idna_adapter v1.2.0
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking statrs v0.17.1
[INFO] [stderr]     Checking bio v2.0.3
[INFO] [stderr]     Checking rust-htslib v0.49.0
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "be128ab082b047c5c670aad065d655c5ee5f5f038294856eff379f12d0b90075", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "be128ab082b047c5c670aad065d655c5ee5f5f038294856eff379f12d0b90075", kill_on_drop: false }`
[INFO] [stdout] be128ab082b047c5c670aad065d655c5ee5f5f038294856eff379f12d0b90075