[INFO] fetching crate gchemol-geometry 0.1.1... [INFO] testing gchemol-geometry-0.1.1 against try#0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6 for pr-137122-1 [INFO] extracting crate gchemol-geometry 0.1.1 into /workspace/builds/worker-7-tc2/source [INFO] started tweaking crates.io crate gchemol-geometry 0.1.1 [INFO] finished tweaking crates.io crate gchemol-geometry 0.1.1 [INFO] tweaked toml for crates.io crate gchemol-geometry 0.1.1 written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate gchemol-geometry 0.1.1 on toolchain 0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 128 packages to latest compatible versions [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.1) [INFO] [stderr] Adding rand_distr v0.4.3 (available: v0.5.1) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1c7de7fd529c3456195ae0e433cd4ac7890609580edc69ef150587e914136211 [INFO] running `Command { std: "docker" "start" "-a" "1c7de7fd529c3456195ae0e433cd4ac7890609580edc69ef150587e914136211", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1c7de7fd529c3456195ae0e433cd4ac7890609580edc69ef150587e914136211", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1c7de7fd529c3456195ae0e433cd4ac7890609580edc69ef150587e914136211", kill_on_drop: false }` [INFO] [stdout] 1c7de7fd529c3456195ae0e433cd4ac7890609580edc69ef150587e914136211 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cccee0688492dc56c75f11b57d7c9479e3c69804285f43814782a09b3e505749 [INFO] running `Command { std: "docker" "start" "-a" "cccee0688492dc56c75f11b57d7c9479e3c69804285f43814782a09b3e505749", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling cfg-if v1.0.1 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling anstyle-query v1.1.3 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling rustix v1.0.7 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling winnow v0.5.40 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling signal-hook-registry v1.4.5 [INFO] [stderr] Compiling os_pipe v1.2.2 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling powerfmt v0.2.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling sigchld v0.2.3 [INFO] [stderr] Compiling linux-raw-sys v0.9.4 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling clap_builder v4.5.40 [INFO] [stderr] Compiling shared_child v1.1.0 [INFO] [stderr] Compiling deranged v0.4.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling is-terminal v0.4.16 [INFO] [stderr] Compiling num-conv v0.1.0 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling time-core v0.1.4 [INFO] [stderr] Compiling itoa v1.0.15 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling humantime v2.2.0 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling time v0.3.41 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling duct v0.13.7 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling shell-escape v0.1.5 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Compiling clap v4.5.40 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling serde_spanned v0.6.9 [INFO] [stderr] Compiling toml_datetime v0.6.11 [INFO] [stderr] Compiling toml_edit v0.19.15 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling simba v0.7.3 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling toml v0.7.8 [INFO] [stderr] Compiling gchemol-gut v0.4.4 [INFO] [stderr] Compiling nalgebra v0.31.4 [INFO] [stderr] Compiling vecfx v0.1.6 [INFO] [stderr] Compiling gchemol-geometry v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `vecfx::*` [INFO] [stdout] --> src/alignment/quaternion.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use vecfx::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::base::euclidean_distance` [INFO] [stdout] --> src/random.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use crate::base::euclidean_distance; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:97:10 [INFO] [stdout] | [INFO] [stdout] 97 | impl<'a> Alignment<'a> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:100:9 [INFO] [stdout] | [INFO] [stdout] 100 | Alignment { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:101:13 [INFO] [stdout] | [INFO] [stdout] 101 | positions, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:102:13 [INFO] [stdout] | [INFO] [stdout] 102 | algorithm: SuperpositionAlgo::default(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:114:20 [INFO] [stdout] | [INFO] [stdout] 114 | let npts = self.positions.len(); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:127:28 [INFO] [stdout] | [INFO] [stdout] 127 | let dx = wi * (self.positions[i][0] - reference[i][0]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:128:28 [INFO] [stdout] | [INFO] [stdout] 128 | let dy = wi * (self.positions[i][1] - reference[i][1]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:129:28 [INFO] [stdout] | [INFO] [stdout] 129 | let dz = wi * (self.positions[i][2] - reference[i][2]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:147:40 [INFO] [stdout] | [INFO] [stdout] 147 | let (rmsd, trans, rot) = match self.algorithm { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:148:94 [INFO] [stdout] | [INFO] [stdout] 148 | SuperpositionAlgo::QCP => self::qcprot::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:149:105 [INFO] [stdout] | [INFO] [stdout] 149 | SuperpositionAlgo::Quaternion => self::quaternion::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/alignment/quaternion.rs:30:9 [INFO] [stdout] | [INFO] [stdout] 30 | for mut v in vectors_ref.iter_mut() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/alignment/quaternion.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | for mut v in vectors_can.iter_mut() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `prepare_test_data` is never used [INFO] [stdout] --> src/alignment/qcprot.rs:456:15 [INFO] [stdout] | [INFO] [stdout] 456 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `translate` is never used [INFO] [stdout] --> src/transform.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | pub fn translate(points: &mut Points, loc: Coord3) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_distance_matrix` is never used [INFO] [stdout] --> src/transform.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 23 | pub fn get_distance_matrix(points: &[Coord3]) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `mirror_invert` is never used [INFO] [stdout] --> src/transform.rs:57:8 [INFO] [stdout] | [INFO] [stdout] 57 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `point_invert` is never used [INFO] [stdout] --> src/transform.rs:64:8 [INFO] [stdout] | [INFO] [stdout] 64 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 34.79s [INFO] running `Command { std: "docker" "inspect" "cccee0688492dc56c75f11b57d7c9479e3c69804285f43814782a09b3e505749", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cccee0688492dc56c75f11b57d7c9479e3c69804285f43814782a09b3e505749", kill_on_drop: false }` [INFO] [stdout] cccee0688492dc56c75f11b57d7c9479e3c69804285f43814782a09b3e505749 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] ceb68778f9c7a8fa29d3df86cff61ea5a69ae053697b42077b414193bd24eb0d [INFO] running `Command { std: "docker" "start" "-a" "ceb68778f9c7a8fa29d3df86cff61ea5a69ae053697b42077b414193bd24eb0d", kill_on_drop: false }` [INFO] [stderr] Compiling gchemol-geometry v0.1.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `vecfx::*` [INFO] [stdout] --> src/alignment/quaternion.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use vecfx::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::base::euclidean_distance` [INFO] [stdout] --> src/random.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use crate::base::euclidean_distance; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:97:10 [INFO] [stdout] | [INFO] [stdout] 97 | impl<'a> Alignment<'a> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:100:9 [INFO] [stdout] | [INFO] [stdout] 100 | Alignment { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:101:13 [INFO] [stdout] | [INFO] [stdout] 101 | positions, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:102:13 [INFO] [stdout] | [INFO] [stdout] 102 | algorithm: SuperpositionAlgo::default(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:114:20 [INFO] [stdout] | [INFO] [stdout] 114 | let npts = self.positions.len(); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:127:28 [INFO] [stdout] | [INFO] [stdout] 127 | let dx = wi * (self.positions[i][0] - reference[i][0]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:128:28 [INFO] [stdout] | [INFO] [stdout] 128 | let dy = wi * (self.positions[i][1] - reference[i][1]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:129:28 [INFO] [stdout] | [INFO] [stdout] 129 | let dz = wi * (self.positions[i][2] - reference[i][2]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:147:40 [INFO] [stdout] | [INFO] [stdout] 147 | let (rmsd, trans, rot) = match self.algorithm { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:148:94 [INFO] [stdout] | [INFO] [stdout] 148 | SuperpositionAlgo::QCP => self::qcprot::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:149:105 [INFO] [stdout] | [INFO] [stdout] 149 | SuperpositionAlgo::Quaternion => self::quaternion::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/alignment/quaternion.rs:30:9 [INFO] [stdout] | [INFO] [stdout] 30 | for mut v in vectors_ref.iter_mut() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/alignment/quaternion.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | for mut v in vectors_can.iter_mut() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `prepare_test_data` is never used [INFO] [stdout] --> src/alignment/qcprot.rs:456:15 [INFO] [stdout] | [INFO] [stdout] 456 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `translate` is never used [INFO] [stdout] --> src/transform.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | pub fn translate(points: &mut Points, loc: Coord3) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_distance_matrix` is never used [INFO] [stdout] --> src/transform.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 23 | pub fn get_distance_matrix(points: &[Coord3]) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `mirror_invert` is never used [INFO] [stdout] --> src/transform.rs:57:8 [INFO] [stdout] | [INFO] [stdout] 57 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `point_invert` is never used [INFO] [stdout] --> src/transform.rs:64:8 [INFO] [stdout] | [INFO] [stdout] 64 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `vecfx::*` [INFO] [stdout] --> src/alignment/quaternion.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use vecfx::*; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::f64::consts::PI` [INFO] [stdout] --> src/traits.rs:133:9 [INFO] [stdout] | [INFO] [stdout] 133 | use std::f64::consts::PI; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:97:10 [INFO] [stdout] | [INFO] [stdout] 97 | impl<'a> Alignment<'a> { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(deprecated)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:100:9 [INFO] [stdout] | [INFO] [stdout] 100 | Alignment { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:101:13 [INFO] [stdout] | [INFO] [stdout] 101 | positions, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:102:13 [INFO] [stdout] | [INFO] [stdout] 102 | algorithm: SuperpositionAlgo::default(), [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:114:20 [INFO] [stdout] | [INFO] [stdout] 114 | let npts = self.positions.len(); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:127:28 [INFO] [stdout] | [INFO] [stdout] 127 | let dx = wi * (self.positions[i][0] - reference[i][0]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:128:28 [INFO] [stdout] | [INFO] [stdout] 128 | let dy = wi * (self.positions[i][1] - reference[i][1]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:129:28 [INFO] [stdout] | [INFO] [stdout] 129 | let dz = wi * (self.positions[i][2] - reference[i][2]); [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:147:40 [INFO] [stdout] | [INFO] [stdout] 147 | let (rmsd, trans, rot) = match self.algorithm { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:148:94 [INFO] [stdout] | [INFO] [stdout] 148 | SuperpositionAlgo::QCP => self::qcprot::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stdout] --> src/alignment.rs:149:105 [INFO] [stdout] | [INFO] [stdout] 149 | SuperpositionAlgo::Quaternion => self::quaternion::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `trans` [INFO] [stdout] --> src/alignment/qcprot.rs:487:16 [INFO] [stdout] | [INFO] [stdout] 487 | let (rmsd, trans, rot) = calc_rmsd_rotational_matrix(&mut frag_a, &mut frag_b, Some(&weights)); [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trans` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/alignment/quaternion.rs:30:9 [INFO] [stdout] | [INFO] [stdout] 30 | for mut v in vectors_ref.iter_mut() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/alignment/quaternion.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | for mut v in vectors_can.iter_mut() { [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `t` [INFO] [stdout] --> src/alignment.rs:302:9 [INFO] [stdout] | [INFO] [stdout] 302 | let t = Vector3f::from([0.423160235, 0.2715202, 0.0]); [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_t` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `translate` is never used [INFO] [stdout] --> src/transform.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | pub fn translate(points: &mut Points, loc: Coord3) { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `get_distance_matrix` is never used [INFO] [stdout] --> src/transform.rs:23:8 [INFO] [stdout] | [INFO] [stdout] 23 | pub fn get_distance_matrix(points: &[Coord3]) -> Vec> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `mirror_invert` is never used [INFO] [stdout] --> src/transform.rs:57:8 [INFO] [stdout] | [INFO] [stdout] 57 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `point_invert` is never used [INFO] [stdout] --> src/transform.rs:64:8 [INFO] [stdout] | [INFO] [stdout] 64 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 5.75s [INFO] running `Command { std: "docker" "inspect" "ceb68778f9c7a8fa29d3df86cff61ea5a69ae053697b42077b414193bd24eb0d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ceb68778f9c7a8fa29d3df86cff61ea5a69ae053697b42077b414193bd24eb0d", kill_on_drop: false }` [INFO] [stdout] ceb68778f9c7a8fa29d3df86cff61ea5a69ae053697b42077b414193bd24eb0d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 55cb7e1e83c048945c76579a8a33e38ff066540794a23dbf7e77002f5be94c1a [INFO] running `Command { std: "docker" "start" "-a" "55cb7e1e83c048945c76579a8a33e38ff066540794a23dbf7e77002f5be94c1a", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `vecfx::*` [INFO] [stderr] --> src/alignment/quaternion.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use vecfx::*; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `crate::base::euclidean_distance` [INFO] [stderr] --> src/random.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use crate::base::euclidean_distance; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:97:10 [INFO] [stderr] | [INFO] [stderr] 97 | impl<'a> Alignment<'a> { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(deprecated)]` on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated struct `alignment::Alignment`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:100:9 [INFO] [stderr] | [INFO] [stderr] 100 | Alignment { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:101:13 [INFO] [stderr] | [INFO] [stderr] 101 | positions, [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:102:13 [INFO] [stderr] | [INFO] [stderr] 102 | algorithm: SuperpositionAlgo::default(), [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:114:20 [INFO] [stderr] | [INFO] [stderr] 114 | let npts = self.positions.len(); [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:127:28 [INFO] [stderr] | [INFO] [stderr] 127 | let dx = wi * (self.positions[i][0] - reference[i][0]); [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:128:28 [INFO] [stderr] | [INFO] [stderr] 128 | let dy = wi * (self.positions[i][1] - reference[i][1]); [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:129:28 [INFO] [stderr] | [INFO] [stderr] 129 | let dz = wi * (self.positions[i][2] - reference[i][2]); [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::algorithm`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:147:40 [INFO] [stderr] | [INFO] [stderr] 147 | let (rmsd, trans, rot) = match self.algorithm { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:148:94 [INFO] [stderr] | [INFO] [stderr] 148 | SuperpositionAlgo::QCP => self::qcprot::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated field `alignment::Alignment::positions`: use Superpose instead [INFO] [stderr] --> src/alignment.rs:149:105 [INFO] [stderr] | [INFO] [stderr] 149 | SuperpositionAlgo::Quaternion => self::quaternion::calc_rmsd_rotational_matrix(&reference, &self.positions, weights), [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/alignment/quaternion.rs:30:9 [INFO] [stderr] | [INFO] [stderr] 30 | for mut v in vectors_ref.iter_mut() { [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/alignment/quaternion.rs:33:9 [INFO] [stderr] | [INFO] [stderr] 33 | for mut v in vectors_can.iter_mut() { [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function `prepare_test_data` is never used [INFO] [stderr] --> src/alignment/qcprot.rs:456:15 [INFO] [stderr] | [INFO] [stderr] 456 | pub(crate) fn prepare_test_data() -> (Vec<[f64; 3]>, Vec<[f64; 3]>, Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function `translate` is never used [INFO] [stderr] --> src/transform.rs:14:8 [INFO] [stderr] | [INFO] [stderr] 14 | pub fn translate(points: &mut Points, loc: Coord3) { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `get_distance_matrix` is never used [INFO] [stderr] --> src/transform.rs:23:8 [INFO] [stderr] | [INFO] [stderr] 23 | pub fn get_distance_matrix(points: &[Coord3]) -> Vec> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `mirror_invert` is never used [INFO] [stderr] --> src/transform.rs:57:8 [INFO] [stderr] | [INFO] [stderr] 57 | pub fn mirror_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `point_invert` is never used [INFO] [stderr] --> src/transform.rs:64:8 [INFO] [stderr] | [INFO] [stderr] 64 | pub fn point_invert(positions: &[[f64; 3]]) -> Vector3fVec { [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `gchemol-geometry` (lib) generated 20 warnings (run `cargo fix --lib -p gchemol-geometry` to apply 4 suggestions) [INFO] [stderr] warning: unused import: `std::f64::consts::PI` [INFO] [stderr] --> src/traits.rs:133:9 [INFO] [stderr] | [INFO] [stderr] 133 | use std::f64::consts::PI; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `trans` [INFO] [stderr] --> src/alignment/qcprot.rs:487:16 [INFO] [stderr] | [INFO] [stderr] 487 | let (rmsd, trans, rot) = calc_rmsd_rotational_matrix(&mut frag_a, &mut frag_b, Some(&weights)); [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_trans` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `t` [INFO] [stderr] --> src/alignment.rs:302:9 [INFO] [stderr] | [INFO] [stderr] 302 | let t = Vector3f::from([0.423160235, 0.2715202, 0.0]); [INFO] [stderr] | ^ help: if this is intentional, prefix it with an underscore: `_t` [INFO] [stderr] [INFO] [stderr] warning: function `translate` is never used [INFO] [stderr] --> src/transform.rs:14:8 [INFO] [stderr] | [INFO] [stderr] 14 | pub fn translate(points: &mut Points, loc: Coord3) { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `gchemol-geometry` (lib test) generated 21 warnings (17 duplicates) (run `cargo fix --lib -p gchemol-geometry --tests` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gchemol_geometry-8a54463574aafdd6) [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test alignment::qcprot::test_qcprot ... ok [INFO] [stdout] test alignment::test_alignment ... ok [INFO] [stdout] test alignment::test_alignment_hcn ... ok [INFO] [stdout] test base::test_weighted_center_of_geometry ... ok [INFO] [stdout] test random::test_rand_rotate ... ok [INFO] [stdout] test traits::test_point3_math ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests gchemol_geometry [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - (line 4) ... ignored [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "55cb7e1e83c048945c76579a8a33e38ff066540794a23dbf7e77002f5be94c1a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "55cb7e1e83c048945c76579a8a33e38ff066540794a23dbf7e77002f5be94c1a", kill_on_drop: false }` [INFO] [stdout] 55cb7e1e83c048945c76579a8a33e38ff066540794a23dbf7e77002f5be94c1a