[INFO] cloning repository https://github.com/zaeleus/noodles [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] ad18da5e285aabcb7a009acca738eca979e1d09e [INFO] testing zaeleus/noodles against try#0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6 for pr-137122-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/zaeleus/noodles [INFO] finished tweaking git repo https://github.com/zaeleus/noodles [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/zaeleus/noodles on toolchain 0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 180 packages to latest Rust 1.85.0 compatible versions [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a5aa803ced8e670afcbc26e40b56fc40667f0d556392cf02bb6b889f74baee12 [INFO] running `Command { std: "docker" "start" "-a" "a5aa803ced8e670afcbc26e40b56fc40667f0d556392cf02bb6b889f74baee12", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a5aa803ced8e670afcbc26e40b56fc40667f0d556392cf02bb6b889f74baee12", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a5aa803ced8e670afcbc26e40b56fc40667f0d556392cf02bb6b889f74baee12", kill_on_drop: false }` [INFO] [stdout] a5aa803ced8e670afcbc26e40b56fc40667f0d556392cf02bb6b889f74baee12 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cabc1ecdba3f39461fa8f870412ffbe1c1811ad9a1cc4d488966301c200ce663 [INFO] running `Command { std: "docker" "start" "-a" "cabc1ecdba3f39461fa8f870412ffbe1c1811ad9a1cc4d488966301c200ce663", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling bytes v1.10.1 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling cfg-if v1.0.1 [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling zlib-rs v0.5.1 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling pin-project-lite v0.2.16 [INFO] [stderr] Compiling futures-core v0.3.31 [INFO] [stderr] Compiling futures-sink v0.3.31 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling itoa v1.0.15 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling cc v1.2.27 [INFO] [stderr] Compiling lexical-util v1.0.6 [INFO] [stderr] Compiling futures-io v0.3.31 [INFO] [stderr] Compiling futures-channel v0.3.31 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling litemap v0.8.0 [INFO] [stderr] Compiling slab v0.4.10 [INFO] [stderr] Compiling futures-task v0.3.31 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling writeable v0.6.1 [INFO] [stderr] Compiling icu_properties_data v2.0.1 [INFO] [stderr] Compiling zeroize v1.8.1 [INFO] [stderr] Compiling icu_normalizer_data v2.0.0 [INFO] [stderr] Compiling futures-util v0.3.31 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling lexical-parse-integer v1.0.5 [INFO] [stderr] Compiling lexical-write-integer v1.0.5 [INFO] [stderr] Compiling rustls-pki-types v1.12.0 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling httparse v1.10.1 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling noodles-core v0.17.0 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling http v1.3.1 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling crossbeam-channel v0.5.15 [INFO] [stderr] Compiling indexmap v2.10.0 [INFO] [stderr] Compiling untrusted v0.9.0 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling socket2 v0.5.10 [INFO] [stderr] Compiling mio v1.0.4 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling lexical-write-float v1.0.5 [INFO] [stderr] Compiling lexical-parse-float v1.0.5 [INFO] [stderr] Compiling generic-array v0.14.7 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling rustls v0.23.28 [INFO] [stderr] Compiling tower-service v0.3.3 [INFO] [stderr] Compiling try-lock v0.2.5 [INFO] [stderr] Compiling want v0.3.1 [INFO] [stderr] Compiling tracing-core v0.1.34 [INFO] [stderr] Compiling subtle v2.6.1 [INFO] [stderr] Compiling tokio v1.45.1 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling sync_wrapper v1.0.2 [INFO] [stderr] Compiling lexical-core v1.0.5 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling base64 v0.22.1 [INFO] [stderr] Compiling tower-layer v0.3.3 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling ipnet v2.11.0 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling webpki-roots v1.0.1 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling iri-string v0.7.8 [INFO] [stderr] Compiling log v0.4.27 [INFO] [stderr] Compiling libbz2-rs-sys v0.2.1 [INFO] [stderr] Compiling noodles-fastq v0.19.0 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling noodles v0.99.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling http-body v1.0.1 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling http-body-util v0.1.3 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling crypto-common v0.1.6 [INFO] [stderr] Compiling block-buffer v0.10.4 [INFO] [stderr] Compiling bzip2 v0.6.0 [INFO] [stderr] Compiling digest v0.10.7 [INFO] [stderr] Compiling md-5 v0.10.6 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling libz-rs-sys v0.5.1 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling noodles-bgzf v0.41.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling noodles-util v0.68.0 (/opt/rustwide/workdir/noodles-util) [INFO] [stderr] Compiling zerovec v0.11.2 [INFO] [stderr] Compiling noodles-csi v0.49.0 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling noodles-fasta v0.54.0 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling futures v0.3.31 [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-csi/src/io/indexed_records.rs:41:43 [INFO] [stdout] | [INFO] [stdout] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion { [INFO] [stdout] | ^^^^^^^ ---------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion<'_, Self, Record> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling noodles-tabix v0.55.0 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling noodles-sam v0.77.0 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-gff v0.50.0 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling noodles-vcf v0.79.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-bed v0.26.0 (/opt/rustwide/workdir/noodles-bed) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-gff/src/feature/record/attributes/field/value.rs:29:21 [INFO] [stdout] | [INFO] [stdout] 29 | pub fn as_array(&self) -> Option<&'r dyn Array> { [INFO] [stdout] | ^^^^^ --------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 29 | pub fn as_array(&self) -> Option<&'r dyn Array<'_>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling noodles-gtf v0.45.0 (/opt/rustwide/workdir/noodles-gtf) [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.2 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling hyper v1.6.0 [INFO] [stderr] Compiling tower v0.5.2 [INFO] [stderr] Compiling tokio-util v0.7.15 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling rustls-webpki v0.103.3 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling tower-http v0.6.6 [INFO] [stderr] Compiling noodles-bam v0.81.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stderr] Compiling hyper-util v0.1.14 [INFO] [stderr] Compiling noodles-bcf v0.76.0 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling noodles-cram v0.84.0 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling tokio-rustls v0.26.2 [INFO] [stderr] Compiling hyper-rustls v0.27.7 [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-cram/src/io/reader/container/slice.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 101 | ) -> io::Result> { [INFO] [stdout] | ------ the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 101 | ) -> io::Result>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling reqwest v0.12.20 [INFO] [stderr] Compiling noodles-htsget v0.8.0 (/opt/rustwide/workdir/noodles-htsget) [INFO] [stderr] Compiling noodles-refget v0.7.0 (/opt/rustwide/workdir/noodles-refget) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 54.96s [INFO] running `Command { std: "docker" "inspect" "cabc1ecdba3f39461fa8f870412ffbe1c1811ad9a1cc4d488966301c200ce663", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cabc1ecdba3f39461fa8f870412ffbe1c1811ad9a1cc4d488966301c200ce663", kill_on_drop: false }` [INFO] [stdout] cabc1ecdba3f39461fa8f870412ffbe1c1811ad9a1cc4d488966301c200ce663 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8b56a716703def95865bc4d5d5c2c957d6545bbf7ab93227ddd1e4185ee0b82d [INFO] running `Command { std: "docker" "start" "-a" "8b56a716703def95865bc4d5d5c2c957d6545bbf7ab93227ddd1e4185ee0b82d", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling noodles-core v0.17.0 (/opt/rustwide/workdir/noodles-core) [INFO] [stderr] Compiling noodles v0.99.0 (/opt/rustwide/workdir/noodles) [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling tokio-macros v2.5.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling tokio v1.45.1 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling zerovec v0.11.2 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.2 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling tokio-util v0.7.15 [INFO] [stderr] Compiling hyper v1.6.0 [INFO] [stderr] Compiling tower v0.5.2 [INFO] [stderr] Compiling tokio-rustls v0.26.2 [INFO] [stderr] Compiling serde_urlencoded v0.7.1 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling serde_test v1.0.177 [INFO] [stderr] Compiling noodles-bgzf v0.41.0 (/opt/rustwide/workdir/noodles-bgzf) [INFO] [stderr] Compiling tower-http v0.6.6 [INFO] [stderr] Compiling noodles-csi v0.49.0 (/opt/rustwide/workdir/noodles-csi) [INFO] [stderr] Compiling noodles-fasta v0.54.0 (/opt/rustwide/workdir/noodles-fasta) [INFO] [stderr] Compiling hyper-util v0.1.14 [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-csi/src/io/indexed_records.rs:41:43 [INFO] [stdout] | [INFO] [stdout] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion { [INFO] [stdout] | ^^^^^^^ ---------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion<'_, Self, Record> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling noodles-sam v0.77.0 (/opt/rustwide/workdir/noodles-sam) [INFO] [stderr] Compiling noodles-tabix v0.55.0 (/opt/rustwide/workdir/noodles-tabix) [INFO] [stderr] Compiling noodles-gff v0.50.0 (/opt/rustwide/workdir/noodles-gff) [INFO] [stderr] Compiling noodles-vcf v0.79.0 (/opt/rustwide/workdir/noodles-vcf) [INFO] [stderr] Compiling noodles-bed v0.26.0 (/opt/rustwide/workdir/noodles-bed) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-gff/src/feature/record/attributes/field/value.rs:29:21 [INFO] [stdout] | [INFO] [stdout] 29 | pub fn as_array(&self) -> Option<&'r dyn Array> { [INFO] [stdout] | ^^^^^ --------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 29 | pub fn as_array(&self) -> Option<&'r dyn Array<'_>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling noodles-fastq v0.19.0 (/opt/rustwide/workdir/noodles-fastq) [INFO] [stderr] Compiling noodles-gtf v0.45.0 (/opt/rustwide/workdir/noodles-gtf) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-csi/src/io/indexed_records.rs:41:43 [INFO] [stdout] | [INFO] [stdout] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion { [INFO] [stdout] | ^^^^^^^ ---------------------------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion<'_, Self, Record> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling hyper-rustls v0.27.7 [INFO] [stderr] Compiling noodles-util v0.68.0 (/opt/rustwide/workdir/noodles-util) [INFO] [stderr] Compiling reqwest v0.12.20 [INFO] [stderr] Compiling noodles-bcf v0.76.0 (/opt/rustwide/workdir/noodles-bcf) [INFO] [stderr] Compiling noodles-bam v0.81.0 (/opt/rustwide/workdir/noodles-bam) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-gff/src/feature/record/attributes/field/value.rs:29:21 [INFO] [stdout] | [INFO] [stdout] 29 | pub fn as_array(&self) -> Option<&'r dyn Array> { [INFO] [stdout] | ^^^^^ --------- the lifetime gets resolved as `'_` [INFO] [stdout] | | [INFO] [stdout] | this lifetime flows to the output [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 29 | pub fn as_array(&self) -> Option<&'r dyn Array<'_>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling noodles-refget v0.7.0 (/opt/rustwide/workdir/noodles-refget) [INFO] [stderr] Compiling noodles-cram v0.84.0 (/opt/rustwide/workdir/noodles-cram) [INFO] [stderr] Compiling noodles-htsget v0.8.0 (/opt/rustwide/workdir/noodles-htsget) [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-cram/src/io/reader/container/slice.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 101 | ) -> io::Result> { [INFO] [stdout] | ------ the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 101 | ) -> io::Result>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stdout] --> noodles-cram/src/io/reader/container/slice.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | &self, [INFO] [stdout] | ^^^^^ this lifetime flows to the output [INFO] [stdout] ... [INFO] [stdout] 101 | ) -> io::Result> { [INFO] [stdout] | ------ the lifetime gets resolved as `'_` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stdout] | [INFO] [stdout] 101 | ) -> io::Result>> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 46.39s [INFO] running `Command { std: "docker" "inspect" "8b56a716703def95865bc4d5d5c2c957d6545bbf7ab93227ddd1e4185ee0b82d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8b56a716703def95865bc4d5d5c2c957d6545bbf7ab93227ddd1e4185ee0b82d", kill_on_drop: false }` [INFO] [stdout] 8b56a716703def95865bc4d5d5c2c957d6545bbf7ab93227ddd1e4185ee0b82d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 19f7bf26cb5da4b4788b02d6bc94eb3c0522459b1be88922b1bc8b2f7755bd15 [INFO] running `Command { std: "docker" "start" "-a" "19f7bf26cb5da4b4788b02d6bc94eb3c0522459b1be88922b1bc8b2f7755bd15", kill_on_drop: false }` [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> noodles-csi/src/io/indexed_records.rs:41:43 [INFO] [stderr] | [INFO] [stderr] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion { [INFO] [stderr] | ^^^^^^^ ---------------------------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 41 | pub fn filter_by_region(self, region: &Region) -> FilterByRegion<'_, Self, Record> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: `noodles-csi` (lib) generated 1 warning [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> noodles-gff/src/feature/record/attributes/field/value.rs:29:21 [INFO] [stderr] | [INFO] [stderr] 29 | pub fn as_array(&self) -> Option<&'r dyn Array> { [INFO] [stderr] | ^^^^^ --------- the lifetime gets resolved as `'_` [INFO] [stderr] | | [INFO] [stderr] | this lifetime flows to the output [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 29 | pub fn as_array(&self) -> Option<&'r dyn Array<'_>> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `noodles-gff` (lib) generated 1 warning [INFO] [stderr] warning: `noodles-gff` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] warning: lifetime flowing from input to output with different syntax can be confusing [INFO] [stderr] --> noodles-cram/src/io/reader/container/slice.rs:95:9 [INFO] [stderr] | [INFO] [stderr] 95 | &self, [INFO] [stderr] | ^^^^^ this lifetime flows to the output [INFO] [stderr] ... [INFO] [stderr] 101 | ) -> io::Result> { [INFO] [stderr] | ------ the lifetime gets resolved as `'_` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: one option is to remove the lifetime for references and use the anonymous lifetime for paths [INFO] [stderr] | [INFO] [stderr] 101 | ) -> io::Result>> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `noodles-cram` (lib) generated 1 warning [INFO] [stderr] warning: `noodles-cram` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] warning: `noodles-csi` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.21s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles-8154be7677674f55) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_bam-0f8353592645d5ec) [INFO] [stdout] [INFO] [stdout] running 123 tests [INFO] [stdout] test bai::io::reader::index::magic_number::tests::test_read_magic_number ... ok [INFO] [stdout] test bai::io::reader::index::magic_number::tests::test_read_magic_number_with_invalid_magic_number ... ok [INFO] [stdout] test bai::io::reader::index::tests::test_read_unplaced_unmapped_record_count ... ok [INFO] [stdout] test bai::io::writer::index::reference_sequences::metadata::tests::test_write_metadata ... ok [INFO] [stdout] test bai::io::reader::index::reference_sequences::bins::tests::test_read_bins ... ok [INFO] [stdout] test bai::io::writer::index::tests::test_write_index ... ok [INFO] [stdout] test fs::index::tests::test_is_coordinate_sorted ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_is_valid ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_push_ext ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_read_magic_number ... ok [INFO] [stdout] test io::reader::header::reference_sequences::reference_sequence::tests::test_read_reference_sequence ... ok [INFO] [stdout] test io::reader::header::reference_sequences::tests::test_read_reference_sequences ... ok [INFO] [stdout] test io::reader::header::sam_header::tests::test_read_with_trailing_nul_padding ... ok [INFO] [stdout] test io::reader::record::tests::test_read_block_size ... ok [INFO] [stdout] test io::reader::header::tests::test_read_header ... ok [INFO] [stdout] test io::reader::header::tests::test_read_header_with_missing_sam_header_reference_sequence_dictionary ... ok [INFO] [stdout] test io::writer::header::tests::test_write_reference_sequence ... ok [INFO] [stdout] test record::codec::decoder::bin::tests::test_consume_bin ... ok [INFO] [stdout] test io::reader::record_buf::tests::test_read_record_buf ... ok [INFO] [stdout] test record::codec::decoder::cigar::op::tests::test_decode_op ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record_with_no_sequence_and_with_quality_scores ... ok [INFO] [stdout] test record::codec::decoder::cigar::tests::test_read_cigar ... ok [INFO] [stdout] test record::codec::decoder::cigar::tests::test_read_op_count ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record_with_sequence_length_greater_than_quality_scores_length ... ok [INFO] [stdout] test record::cigar::tests::test_iter ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record_with_sequence_length_less_than_quality_scores_length ... ok [INFO] [stdout] test record::codec::decoder::cigar::op::kind::tests::test_decode_kind ... ok [INFO] [stdout] test io::writer::header::tests::test_write_reference_sequences ... ok [INFO] [stdout] test record::codec::decoder::cigar::tests::test_resolve ... ok [INFO] [stdout] test record::codec::decoder::data::field::tag::tests::test_read_tag ... ok [INFO] [stdout] test record::codec::decoder::data::field::tests::test_read_field ... ok [INFO] [stdout] test record::codec::decoder::data::field::value::array::subtype::tests::test_read_subtype ... ok [INFO] [stdout] test record::codec::decoder::data::field::ty::tests::test_read_type ... ok [INFO] [stdout] test record::codec::decoder::flags::tests::test_read_flags ... ok [INFO] [stdout] test record::codec::decoder::name::tests::test_read_length ... ok [INFO] [stdout] test record::codec::decoder::mapping_quality::tests::test_read_mapping_quality ... ok [INFO] [stdout] test record::codec::decoder::name::tests::test_read_name ... ok [INFO] [stdout] test fs::index::tests::test_index ... ok [INFO] [stdout] test record::codec::decoder::data::tests::test_read_data ... ok [INFO] [stdout] test record::codec::decoder::position::tests::test_read_position ... ok [INFO] [stdout] test record::codec::decoder::data::field::value::tests::test_read_value ... ok [INFO] [stdout] test io::writer::header::tests::test_write_raw_header ... ok [INFO] [stdout] test record::codec::decoder::position::tests::test_read_position_with_max_position ... ok [INFO] [stdout] test record::codec::decoder::quality_scores::tests::test_get_quality_scores_with_sequence_and_no_quality_scores ... ok [INFO] [stdout] test record::codec::decoder::quality_scores::tests::test_read_quality_scores ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record_with_sequence_and_quality_scores ... ok [INFO] [stdout] test record::codec::decoder::reference_sequence_id::tests::test_read_reference_sequence_id ... ok [INFO] [stdout] test record::codec::decoder::sequence::tests::test_decode_base ... ok [INFO] [stdout] test io::reader::query::tests::test_next ... ok [INFO] [stdout] test record::codec::decoder::sequence::tests::test_read_length ... ok [INFO] [stdout] test record::codec::decoder::sequence::tests::test_read_sequence ... ok [INFO] [stdout] test record::codec::encoder::bin::tests::test_write_bin ... ok [INFO] [stdout] test record::codec::encoder::cigar::op::kind::tests::test_encode_kind ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record_with_sequence_and_no_quality_scores ... ok [INFO] [stdout] test record::codec::encoder::cigar::op::tests::test_encode_op ... ok [INFO] [stdout] test record::codec::encoder::cigar::tests::test_write_cigar ... ok [INFO] [stdout] test record::codec::decoder::template_length::tests::test_read_template_length ... ok [INFO] [stdout] test record::codec::encoder::data::field::tests::test_write_cigar ... ok [INFO] [stdout] test record::codec::decoder::tests::test_decode_with_invalid_l_read_name ... ok [INFO] [stdout] test record::codec::encoder::bin::tests::test_region_to_bin ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record ... ok [INFO] [stdout] test record::codec::encoder::data::field::tag::tests::test_write_tag ... ok [INFO] [stdout] test record::codec::encoder::data::field::ty::tests::test_type_to_u8 ... ok [INFO] [stdout] test record::codec::encoder::data::field::tests::test_write_field ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::array::tests::test_write_array ... ok [INFO] [stdout] test io::writer::tests::test_write_alignment_record_with_data ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::hex::tests::test_write_hex ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::string::tests::test_is_valid ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::string::tests::test_write_string ... ok [INFO] [stdout] test record::codec::encoder::data::field::ty::tests::test_write_type ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::tests::test_write_value ... ok [INFO] [stdout] test record::codec::encoder::data::tests::test_write_data ... ok [INFO] [stdout] test record::codec::encoder::flags::tests::test_write_flags ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::array::subtype::tests::test_write_subtype ... ok [INFO] [stdout] test record::codec::encoder::mapping_quality::tests::test_write_mapping_quality ... ok [INFO] [stdout] test record::codec::encoder::name::tests::test_put_name_with_invalid_name ... ok [INFO] [stdout] test record::codec::encoder::data::field::value::hex::tests::test_is_valid ... ok [INFO] [stdout] test record::codec::encoder::position::tests::test_write_position ... ok [INFO] [stdout] test record::codec::encoder::quality_scores::tests::test_write_quality_scores ... ok [INFO] [stdout] test record::codec::encoder::name::tests::test_write_length ... ok [INFO] [stdout] test record::codec::encoder::sequence::tests::test_encode_base ... ok [INFO] [stdout] test record::codec::encoder::reference_sequence_id::tests::test_write_reference_sequence_id ... ok [INFO] [stdout] test record::codec::encoder::sequence::tests::test_write_length ... ok [INFO] [stdout] test record::codec::encoder::sequence::tests::test_write_length_with_out_of_range_base_count ... ok [INFO] [stdout] test record::codec::encoder::name::tests::test_write_name ... ok [INFO] [stdout] test record::codec::encoder::tests::test_encode_with_all_fields ... ok [INFO] [stdout] test record::codec::encoder::tests::test_encode_with_default_fields ... ok [INFO] [stdout] test record::data::field::tag::tests::test_decode_tag ... ok [INFO] [stdout] test record::data::field::tests::test_decode_field ... ok [INFO] [stdout] test record::data::field::ty::tests::test_decode_type ... ok [INFO] [stdout] test record::codec::encoder::template_length::tests::test_write_template_length ... ok [INFO] [stdout] test record::data::field::value::array::subtype::tests::test_decode_subtype ... ok [INFO] [stdout] test record::data::field::value::array::values::tests::test_len ... ok [INFO] [stdout] test record::data::field::value::tests::test_decode_value ... ok [INFO] [stdout] test record::data::tests::test_is_empty ... ok [INFO] [stdout] test record::data::field::value::array::values::tests::test_iter ... ok [INFO] [stdout] test record::data::tests::test_iter ... ok [INFO] [stdout] test record::codec::encoder::sequence::tests::test_write_sequence ... ok [INFO] [stdout] test record::fields::bounds::tests::test_ranges ... ok [INFO] [stdout] test record::fields::tests::test_cigar ... ok [INFO] [stdout] test record::fields::tests::test_cigar_with_2_cigar_ops ... ok [INFO] [stdout] test record::fields::tests::test_cigar_with_overflowing_cigar ... ok [INFO] [stdout] test record::fields::tests::test_index ... ok [INFO] [stdout] test record::data::field::value::tests::test_ty ... ok [INFO] [stdout] test record::data::field::value::array::tests::test_decode_array ... ok [INFO] [stdout] test record::sequence::iter::tests::test_next ... ok [INFO] [stdout] test record::sequence::iter::tests::test_size_hint ... ok [INFO] [stdout] test record::sequence::subsequence::tests::test_get ... ok [INFO] [stdout] test record::sequence::subsequence::tests::test_is_empty ... ok [INFO] [stdout] test record::fields::tests::test_name ... ok [INFO] [stdout] test record::sequence::subsequence::tests::test_iter ... ok [INFO] [stdout] test record::sequence::subsequence::tests::test_len ... ok [INFO] [stdout] test record::sequence::subsequence::tests::test_split_at_checked ... ok [INFO] [stdout] test record::data::tests::test_get ... ok [INFO] [stdout] test record::sequence::iter::tests::test_next_back ... ok [INFO] [stdout] test record::fields::tests::test_name_with_name ... ok [INFO] [stdout] test record::sequence::tests::test_debug_fmt ... ok [INFO] [stdout] test record::sequence::tests::test_decode_base ... ok [INFO] [stdout] test record::sequence::tests::test_get ... ok [INFO] [stdout] test record::sequence::tests::test_split_at_checked ... ok [INFO] [stdout] test record::codec::encoder::cigar::tests::test_overflowing_write_cigar_op_count ... ok [INFO] [stdout] test record::tests::test_cigar_with_oversized_cigar ... ok [INFO] [stdout] test record::codec::encoder::tests::test_encode_with_oversized_cigar ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 123 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_bcf-a363ae0a6e8bb489) [INFO] [stdout] [INFO] [stdout] running 129 tests [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test io::reader::header::format_version::tests::test_read_format_version ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_is_valid ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_read_magic_number ... ok [INFO] [stdout] test io::reader::header::tests::test_read_header ... ok [INFO] [stdout] test io::reader::record::tests::test_read_record_at_eof ... ok [INFO] [stdout] test io::reader::record::tests::test_read_site_length ... ok [INFO] [stdout] test io::writer::header::tests::test_write_header ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record ... ok [INFO] [stdout] test io::writer::tests::test_write_file_format ... ok [INFO] [stdout] test record::codec::decoder::chromosome_id::tests::test_read_chrom ... ok [INFO] [stdout] test io::reader::record::tests::test_read_record ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_character_array_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_character_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_flag_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_float_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_float_array_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_integer_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_integer_array_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_string_array_value ... ok [INFO] [stdout] test record::codec::decoder::info::field::value::tests::test_read_value_with_string_value ... ok [INFO] [stdout] test record::codec::decoder::position::tests::test_read_pos ... ok [INFO] [stdout] test record::codec::decoder::position::tests::test_read_pos_with_max_position ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_f32 ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_f32s ... ok [INFO] [stdout] test record::codec::decoder::quality_score::tests::test_read_qual ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_i32 ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_i16 ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_i16s ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_i32s ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_parse_genotype_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_character_array_values ... ok [INFO] [stdout] test fs::index::tests::test_index ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_float_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_int16_array_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_int16_values ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_i8s ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_i8 ... ok [INFO] [stdout] test record::codec::decoder::raw_value::tests::test_read_string ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_int32_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_character_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_int8_array_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_int32_array_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_float_array_values ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_int8_values ... ok [INFO] [stdout] test record::codec::decoder::samples::key::tests::test_read_key ... ok [INFO] [stdout] test record::codec::decoder::string_map::tests::test_read_string_map_entry ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_string_values ... ok [INFO] [stdout] test record::codec::decoder::string_map::tests::test_read_string_map_index ... ok [INFO] [stdout] test record::codec::decoder::string_map::tests::test_read_string_map_indices ... ok [INFO] [stdout] test record::codec::decoder::samples::values::tests::test_read_values_with_string_array_values ... ok [INFO] [stdout] test record::codec::decoder::value::ty::tests::test_read_type ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_encode_genotype ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_genotype_values_with_padding ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_character_array_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_encode_genotype_str ... ok [INFO] [stdout] test record::codec::encoder::samples::tests::test_write_samples ... ok [INFO] [stdout] test record::codec::decoder::value::tests::test_read_value ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_character_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_integer_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_float_array_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_float_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_string_array_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_string_values ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_genotype_values ... ok [INFO] [stdout] test record::codec::encoder::site::bases::tests::test_write_bases ... ok [INFO] [stdout] test record::codec::encoder::site::ids::tests::test_write_ids ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_character_array_value ... ok [INFO] [stdout] test record::codec::encoder::site::filters::tests::test_write_filters ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_character_value ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_flag_value ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_integer_value ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_string_array_value ... ok [INFO] [stdout] test record::codec::encoder::samples::values::tests::test_write_values_with_integer_array_values ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_float_array_value ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_string_value ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_float_value ... ok [INFO] [stdout] test record::codec::encoder::site::quality_score::tests::test_write_qual ... ok [INFO] [stdout] test record::codec::encoder::site::position::tests::test_write_pos ... ok [INFO] [stdout] test record::codec::encoder::site::reference_sequence_id::tests::test_write_chrom ... ok [INFO] [stdout] test record::codec::encoder::site::tests::test_write_rlen ... ok [INFO] [stdout] test record::codec::encoder::site::info::field::value::tests::test_write_value_with_integer_array_value ... ok [INFO] [stdout] test record::codec::encoder::string_map::tests::test_write_string_map_indices ... ok [INFO] [stdout] test record::codec::encoder::site::tests::test_n_fmt_sample ... ok [INFO] [stdout] test record::codec::encoder::value::tests::test_write_value ... ok [INFO] [stdout] test record::codec::encoder::value::ty::tests::test_write_type_with_gt_14_values ... ok [INFO] [stdout] test record::codec::encoder::site::tests::test_n_allele ... ok [INFO] [stdout] test record::codec::value::int16::tests::test_from_i16_for_int16 ... ok [INFO] [stdout] test record::codec::value::int16::tests::test_from_int16_for_i16 ... ok [INFO] [stdout] test record::codec::value::int32::tests::test_from_i32_for_int32 ... ok [INFO] [stdout] test record::codec::encoder::value::ty::tests::test_write_type ... ok [INFO] [stdout] test record::codec::value::int32::tests::test_from_int32_for_i32 ... ok [INFO] [stdout] test record::codec::value::int8::tests::test_from_i8_for_int8 ... ok [INFO] [stdout] test record::codec::value::int8::tests::test_from_int8_for_i8 ... ok [INFO] [stdout] test record::codec::encoder::string_map::tests::test_write_string_map_index ... ok [INFO] [stdout] test record::codec::value::float::tests::test_from_f32_for_float ... ok [INFO] [stdout] test record::ids::tests::test_is_empty ... ok [INFO] [stdout] test record::codec::value::float::tests::test_from_float_for_f32 ... ok [INFO] [stdout] test record::ids::tests::test_iter ... ok [INFO] [stdout] test record::ids::tests::test_len ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_character_array_value ... ok [INFO] [stdout] test record::filters::tests::test_indices ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_flag_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_integer_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_string_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_float_array_value ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_character_array_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_character_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_float_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_integer_array_value ... ok [INFO] [stdout] test record::info::field::value::tests::test_read_value_with_string_array_value ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_character_value ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_float_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_float_array_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_int16_array_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_int16_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_int32_array_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_int8_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_int8_array_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_string_array_value ... ok [INFO] [stdout] test record::samples::series::value::genotype::tests::test_allele_position ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_int32_values ... ok [INFO] [stdout] test record::samples::series::tests::test_iter ... ok [INFO] [stdout] test record::samples::series::value::genotype::tests::test_is_phased ... ok [INFO] [stdout] test record::samples::series::tests::test_get_with_string_value ... ok [INFO] [stdout] test record::samples::series::value::genotype::tests::test_iter ... ok [INFO] [stdout] test record::value::tests::test_read_value ... ok [INFO] [stdout] test record::value::ty::tests::test_read_type ... ok [INFO] [stdout] test record::samples::series::value::genotype::tests::test_first_allele_phasing ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 129 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_bed-c1b524d9b3062d95) [INFO] [stdout] [INFO] [stdout] running 18 tests [INFO] [stdout] test io::writer::record::other_fields::value::tests::test_write_value ... ok [INFO] [stdout] test io::reader::record::tests::test_read_record_3 ... ok [INFO] [stdout] test io::writer::record::name::tests::test_write_reference_sequence_name ... ok [INFO] [stdout] test io::writer::record::other_fields::value::character::tests::test_write_character ... ok [INFO] [stdout] test io::writer::record::feature_end::tests::test_write_feature_start ... ok [INFO] [stdout] test io::writer::record::feature_start::tests::test_write_feature_start ... ok [INFO] [stdout] test io::writer::record::other_fields::value::string::tests::test_write_string ... ok [INFO] [stdout] test io::writer::record::other_fields::tests::test_write_other_fields ... ok [INFO] [stdout] test io::writer::record::score::tests::test_write_score ... ok [INFO] [stdout] test io::writer::record::strand::tests::test_write_strand ... ok [INFO] [stdout] test io::writer::record::reference_sequence_name::tests::test_write_reference_sequence_name ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record_3 ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record_4 ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record_5 ... ok [INFO] [stdout] test record::fields::bounds::tests::test_get ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record_6 ... ok [INFO] [stdout] test record::fields::bounds::tests::test_ranges ... ok [INFO] [stdout] test record::fields::tests::test_parse_strand ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 18 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_bgzf-f73ec886a334e33a) [INFO] [stdout] [INFO] [stdout] running 44 tests [INFO] [stdout] test io::block::tests::test_virtual_position ... ok [INFO] [stdout] test io::block::data::tests::test_has_remaining ... ok [INFO] [stdout] test io::block::data::tests::test_position ... ok [INFO] [stdout] test io::block::data::tests::test_consume ... ok [INFO] [stdout] test io::reader::frame::tests::test_is_valid_header ... ok [INFO] [stdout] test io::reader::frame::tests::test_parse_header ... ok [INFO] [stdout] test gzi::io::writer::index::tests::test_write_index ... ok [INFO] [stdout] test gzi::io::writer::index::tests::test_write_index_with_no_entries ... ok [INFO] [stdout] test io::reader::frame::tests::test_read_frame_into ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test io::reader::frame::tests::test_read_frame_into_with_invalid_block_size ... ok [INFO] [stdout] test io::reader::frame::tests::test_parse_trailer ... ok [INFO] [stdout] test gzi::io::reader::index::tests::test_read_index ... ok [INFO] [stdout] test gzi::io::reader::index::tests::test_read_index_with_no_entries ... ok [INFO] [stdout] test gzi::io::reader::index::tests::test_read_index_with_trailing_data ... ok [INFO] [stdout] test gzi::io::reader::index::tests::test_read_index_with_fewer_than_len_entries ... ok [INFO] [stdout] test gzi::r#async::io::reader::index::tests::test_read_index_with_fewer_than_len_entries ... ok [INFO] [stdout] test gzi::r#async::io::reader::index::tests::test_read_index_with_no_entries ... ok [INFO] [stdout] test gzi::r#async::io::reader::index::tests::test_read_index_with_trailing_data ... ok [INFO] [stdout] test gzi::r#async::io::writer::index::tests::test_write_index_with_no_entries ... ok [INFO] [stdout] test gzi::r#async::io::writer::index::tests::test_write_index ... ok [INFO] [stdout] test gzi::r#async::io::reader::index::tests::test_read_index ... ok [INFO] [stdout] test io::writer::compression_level::tests::test_default ... ok [INFO] [stdout] test io::reader::tests::test_read_with_empty_block ... ok [INFO] [stdout] test io::writer::frame::tests::test_write_header ... ok [INFO] [stdout] test io::writer::frame::tests::test_write_trailer ... ok [INFO] [stdout] test io::reader::tests::test_seek ... ok [INFO] [stdout] test io::reader::tests::test_seek_by_uncompressed_position ... ok [INFO] [stdout] test r#async::block_codec::tests::test_put_header ... ok [INFO] [stdout] test r#async::block_codec::tests::test_decode ... ok [INFO] [stdout] test r#async::block_codec::tests::test_encode ... ok [INFO] [stdout] test virtual_position::tests::test_from_u64_for_virtual_position ... ok [INFO] [stdout] test virtual_position::tests::test_from_virtual_position_for_u64_u16_tuple ... ok [INFO] [stdout] test virtual_position::tests::test_try_from_u64_u16_tuple_for_virtual_position ... ok [INFO] [stdout] test io::writer::tests::test_finish ... ok [INFO] [stdout] test virtual_position::tests::test_from_virtual_position_for_u64 ... ok [INFO] [stdout] test io::writer::tests::test_virtual_position ... ok [INFO] [stdout] test io::multithreaded_reader::tests::test_seek_to_virtual_position ... ok [INFO] [stdout] test r#async::io::reader::tests::test_seek ... ok [INFO] [stdout] test r#async::io::reader::tests::test_read_with_empty_block ... ok [INFO] [stdout] test io::tests::test_self_buffered ... ok [INFO] [stdout] test r#async::io::tests::test_self ... ok [INFO] [stdout] test io::tests::test_self ... ok [INFO] [stdout] test io::tests::test_self_multithreaded ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 44 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_core-6384c625bc44dba0) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test region::interval::tests::test_intersects ... ok [INFO] [stdout] test region::interval::tests::test_fmt ... ok [INFO] [stdout] test region::tests::test_fmt ... ok [INFO] [stdout] test region::interval::tests::test_from_str ... ok [INFO] [stdout] test region::tests::test_from_str ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_cram-60522afb17b860af) [INFO] [stdout] [INFO] [stdout] running 168 tests [INFO] [stdout] test codecs::aac::encode::tests::test_encode_cat ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_uncompressed ... ok [INFO] [stdout] test codecs::fqzcomp::decode::tests::test_reverse_qualities ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_pack ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_ext ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_bit_packing_with_6_symbols ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_0 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_stripe ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_0 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_order_1 ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_stripe ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_0 ... ok [INFO] [stdout] test codecs::aac::decode::tests::test_decode_rle_with_order_1 ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_order_1 ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_0 ... ok [INFO] [stdout] test codecs::rans_4x8::decode::header::tests::test_read_header ... ok [INFO] [stdout] test codecs::rans_4x8::decode::header::tests::test_read_order ... ok [INFO] [stdout] test codecs::aac::encode::tests::test_encode_rle_with_order_1 ... ok [INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode_with_arithmetic_coder ... ok [INFO] [stdout] test codecs::name_tokenizer::decode::tests::test_decode ... ok [INFO] [stdout] test codecs::rans_4x8::decode::tests::test_read_header ... ok [INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_0 ... ok [INFO] [stdout] test codecs::rans_4x8::encode::header::tests::test_write_order ... ok [INFO] [stdout] test codecs::rans_4x8::encode::header::tests::test_write_header ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_build_raw_frequencies ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_encode ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_0::tests::test_normalize_frequencies ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_split_chunks ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_build_raw_frequencies ... ok [INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_0 ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_rle ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_stripe ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_bit_packing_with_6_symbols ... ok [INFO] [stdout] test codecs::name_tokenizer::tests::test_self ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_0 ... ok [INFO] [stdout] test codecs::rans_4x8::tests::test_self_0 ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_uncompressed ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_rle ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_pack ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_0 ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_uncompressed ... ok [INFO] [stdout] test container::block::compression_method::tests::test_default ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_stripe ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_normalize_frequencies ... ok [INFO] [stdout] test container::compression_header::data_series_encodings::data_series::tests::test_try_from_byte_array_for_data_series ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte::tests::test_decode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte::tests::test_decode_take ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte_array::tests::test_decode ... ok [INFO] [stdout] test container::compression_header::encoding::codec::byte_array::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::data_series_encodings::data_series::tests::test_from_data_series_for_u8_array ... ok [INFO] [stdout] test container::compression_header::encoding::codec::integer::tests::test_encode ... ok [INFO] [stdout] test container::compression_header::preservation_map::key::tests::test_from_key_for_u8_array ... ok [INFO] [stdout] test container::compression_header::preservation_map::key::tests::test_try_from_u8_array_for_key ... ok [INFO] [stdout] test container::compression_header::encoding::codec::integer::tests::test_decode ... ok [INFO] [stdout] test codecs::rans_nx16::decode::tests::test_decode_order_1 ... ok [INFO] [stdout] test container::compression_header::preservation_map::substitution_matrix::base::tests::test_from_base_for_u8 ... ok [INFO] [stdout] test container::compression_header::preservation_map::substitution_matrix::base::tests::test_try_from_u8_for_base ... ok [INFO] [stdout] test container::compression_header::preservation_map::substitution_matrix::tests::test_find ... ok [INFO] [stdout] test container::compression_header::preservation_map::tag_sets::key::tests::test_from_key_for_block_content_id ... ok [INFO] [stdout] test codecs::rans_4x8::encode::order_1::tests::test_encode ... ok [INFO] [stdout] test crai::record::tests::test_fmt ... ok [INFO] [stdout] test container::reference_sequence_context::tests::test_alignment_span ... ok [INFO] [stdout] test crai::io::writer::tests::test_write_record ... ok [INFO] [stdout] test crai::record::tests::test_from_str ... ok [INFO] [stdout] test codecs::rans_4x8::encode::tests::test_encode_with_order_1 ... ok [INFO] [stdout] test container::reference_sequence_context::tests::test_try_from_i32_i32_i32_for_reference_sequence_context ... ok [INFO] [stdout] test container::reference_sequence_context::tests::test_update ... ok [INFO] [stdout] test crai::record::tests::test_from_str_with_invalid_records ... ok [INFO] [stdout] test file_definition::tests::test_default ... ok [INFO] [stdout] test file_definition::version::tests::test_default ... ok [INFO] [stdout] test huffman::tests::test_build_canonical_code_book ... ok [INFO] [stdout] test huffman::tests::test_decode ... ok [INFO] [stdout] test io::bit_reader::tests::test_read_u32 ... ok [INFO] [stdout] test io::bit_writer::tests::test_write_u32 ... ok [INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_0_len ... ok [INFO] [stdout] test io::bit_writer::tests::test_write_u32_with_length_greater_than_32_bits ... ok [INFO] [stdout] test io::reader::container::block::compression_method::tests::test_decode ... ok [INFO] [stdout] test io::reader::container::block::compression_method::tests::test_get_compression_method ... ok [INFO] [stdout] test io::reader::container::block::content_type::tests::test_decode ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test io::reader::container::block::tests::test_read_block ... ok [INFO] [stdout] test io::reader::container::block::tests::test_read_block_with_empty_block ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_beta_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_byte_array_length_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::data_series_encodings::tests::test_read_data_series_encodings ... ok [INFO] [stdout] test io::reader::container::block::content_type::tests::test_read_content_type ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_byte_array_stop_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_external_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_golomb_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_huffman_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_subexp_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_gamma_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::substitution_matrix::tests::test_read_substitution_matrix ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_bool ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_kind ... ok [INFO] [stdout] test io::reader::container::compression_header::encoding::tests::test_read_golomb_rice_codec ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tag_sets::tests::test_decode_type ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_preservation_map ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_preservation_map_with_no_substitution_matrix ... ok [INFO] [stdout] test io::reader::container::compression_header::preservation_map::tests::test_read_preservation_map_with_no_tag_ids_dictionary ... ok [INFO] [stdout] test crai::io::reader::tests::test_read_index ... ok [INFO] [stdout] test io::reader::container::slice::header::tests::test_read_header_inner ... ok [INFO] [stdout] test io::reader::container::slice::tests::test_calculate_template_length ... ok [INFO] [stdout] test io::reader::container::slice::tests::test_resolve_mates ... ok [INFO] [stdout] test io::reader::header::container::sam_header::tests::test_read_with_trailing_nul_padding ... ok [INFO] [stdout] test io::reader::header::file_id::tests::test_read_file_id ... ok [INFO] [stdout] test io::reader::container::header::tests::test_read_header ... ok [INFO] [stdout] test io::reader::container::header::tests::test_read_header_with_a_checksum_mismatch ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_is_valid ... ok [INFO] [stdout] test io::reader::header::magic_number::tests::test_read_magic_number ... ok [INFO] [stdout] test io::reader::container::header::tests::test_read_header_with_eof ... ok [INFO] [stdout] test io::reader::num::itf8::tests::test_read_itf8 ... ok [INFO] [stdout] test io::reader::header::format_version::tests::test_read_format_version ... ok [INFO] [stdout] test io::reader::num::ltf8::tests::test_read_ltf8 ... ok [INFO] [stdout] test io::writer::builder::tests::test_uses_cram_3_1_codecs ... ok [INFO] [stdout] test io::writer::container::block::compression_method::tests::test_encode ... ok [INFO] [stdout] test io::reader::num::vlq::tests::test_read_uint7 ... ok [INFO] [stdout] test io::reader::header::tests::test_read_file_definition ... ok [INFO] [stdout] test io::writer::container::block::compression_method::tests::test_write_compression_method ... ok [INFO] [stdout] test io::writer::container::block::content_type::tests::test_write_content_type ... ok [INFO] [stdout] test io::writer::container::block::content_type::tests::test_encode ... ok [INFO] [stdout] test io::writer::container::block::tests::test_itf8_size_of ... ok [INFO] [stdout] test io::writer::container::compression_header::data_series_encodings::tests::test_data_series_encodings_len ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_beta_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_byte_array_length_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_byte_array_stop_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_external_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_gamma_codec ... ok [INFO] [stdout] test io::writer::container::block::tests::test_write_block ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_golomb_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_huffman_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_subexp_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::frequencies::tests::test_from_frequencies_for_substitution_matrix ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::frequencies::tests::test_hit ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::frequencies::tests::test_row ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::substitution_matrix::tests::test_encode ... ok [INFO] [stdout] test io::writer::container::compression_header::encoding::tests::test_write_golomb_rice_codec ... ok [INFO] [stdout] test io::writer::container::compression_header::preservation_map::tag_sets::tests::test_write_tag_sets ... ok [INFO] [stdout] test io::writer::header::container::tests::test_validate_reference_sequences ... ok [INFO] [stdout] test io::writer::header::file_id::tests::test_write_file_id ... ok [INFO] [stdout] test io::writer::header::magic_number::tests::test_write_magic_number ... ok [INFO] [stdout] test io::writer::num::itf8::tests::test_write_itf8 ... ok [INFO] [stdout] test io::writer::num::ltf8::tests::test_write_ltf8 ... ok [INFO] [stdout] test io::writer::num::vlq::tests::test_write_uint7 ... ok [INFO] [stdout] test io::writer::record::convert::tests::test_cigar_to_features ... ok [INFO] [stdout] test record::cigar::iter::tests::test_next ... ok [INFO] [stdout] test record::data::iter::tests::test_size_hint ... ok [INFO] [stdout] test io::writer::record::convert::tests::test_cigar_to_features_with_quality_scores_stored_as_array ... ok [INFO] [stdout] test record::quality_scores::iter::tests::test_size_hint ... ok [INFO] [stdout] test record::quality_scores::iter::tests::test_iter ... ok [INFO] [stdout] test io::writer::header::tests::test_add_missing_reference_sequence_checksums ... ok [INFO] [stdout] test record::feature::code::tests::test_try_from_u8_for_code ... ok [INFO] [stdout] test record::feature::tests::test_position ... ok [INFO] [stdout] test record::sequence::iter::tests::test_next ... ok [INFO] [stdout] test record::feature::code::tests::test_from_code_for_u8 ... ok [INFO] [stdout] test record::sequence::iter::tests::test_size_hint ... ok [INFO] [stdout] test record::sequence::iter::with_positions::tests::test_next ... ok [INFO] [stdout] test record::tests::test_calculate_alignment_span ... ok [INFO] [stdout] test tests::test_calculate_normalized_sequence_digest ... ok [INFO] [stdout] test io::writer::header::container::tests::test_write_container ... ok [INFO] [stdout] test codecs::rans_nx16::encode::tests::test_encode_order_1 ... ok [INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode ... ok [INFO] [stdout] test codecs::fqzcomp::decode::tests::test_decode ... ok [INFO] [stdout] test codecs::fqzcomp::encode::tests::test_encode_with_do_len ... ok [INFO] [stdout] test codecs::rans_4x8::decode::tests::test_decode_with_order_1 ... ok [INFO] [stdout] test codecs::rans_4x8::tests::test_self_1 ... ok [INFO] [stdout] test codecs::fqzcomp::tests::test_self ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 168 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_csi-a7499fb041658271) [INFO] [stdout] [INFO] [stdout] running 53 tests [INFO] [stdout] test binning_index::index::header::format::coordinate_system::tests::test_from_coordinate_system_for_u16 ... ok [INFO] [stdout] test binning_index::index::reference_sequence::bin::chunk::tests::test_from_range_bgzf_virtual_position_for_chunk ... ok [INFO] [stdout] test binning_index::index::header::format::coordinate_system::tests::test_try_from_u16_for_coordinate_system ... ok [INFO] [stdout] test binning_index::index::header::format::tests::test_from_format_for_i32 ... ok [INFO] [stdout] test binning_index::index::reference_sequence::tests::test_reg2bin ... ok [INFO] [stdout] test binning_index::index::header::format::tests::test_try_from_i32_for_format ... ok [INFO] [stdout] test binning_index::index::tests::test_max_position ... ok [INFO] [stdout] test binning_index::index::header::builder::tests::test_gff ... ok [INFO] [stdout] test binning_index::index::header::builder::tests::test_bed ... ok [INFO] [stdout] test binning_index::index::header::builder::tests::test_sam ... ok [INFO] [stdout] test binning_index::index::builder::tests::test_default ... ok [INFO] [stdout] test binning_index::index::header::builder::tests::test_vcf ... ok [INFO] [stdout] test binning_index::index::reference_sequence::index::linear_index::tests::test_update ... ok [INFO] [stdout] test binning_index::index::reference_sequence::tests::test_query ... ok [INFO] [stdout] test binning_index::index::reference_sequence::bin::tests::test_add_chunk ... ok [INFO] [stdout] test binning_index::indexer::tests::test_build_with_no_reference_sequences ... ok [INFO] [stdout] test binning_index::tests::test_merge_chunks_with_empty_list ... ok [INFO] [stdout] test binning_index::indexer::tests::test_build_with_nonstandard_bin_factors ... ok [INFO] [stdout] test binning_index::indexer::tests::test_default ... ok [INFO] [stdout] test binning_index::indexer::tests::test_build_with_reference_sequence_count ... ok [INFO] [stdout] test io::filter_by_region::tests::test_next ... ok [INFO] [stdout] test binning_index::tests::test_merge_chunks ... ok [INFO] [stdout] test binning_index::tests::test_optimize_chunks ... ok [INFO] [stdout] test binning_index::index::reference_sequence::tests::test_reg2bins ... ok [INFO] [stdout] test io::reader::index::header::tests::test_read_end_position_index ... ok [INFO] [stdout] test io::reader::index::header::tests::test_read_start_position_index ... ok [INFO] [stdout] test io::reader::index::reference_sequences::bins::chunks::tests::test_read_chunks ... ok [INFO] [stdout] test io::reader::index::reference_sequences::metadata::tests::test_read_metadata ... ok [INFO] [stdout] test io::reader::index::reference_sequences::metadata::tests::test_read_metadata_with_invalid_chunk_count ... ok [INFO] [stdout] test io::reader::index::header::tests::test_read_reference_sequence_name_index ... ok [INFO] [stdout] test io::reader::index::tests::test_read_magic ... ok [INFO] [stdout] test io::reader::index::tests::test_read_magic_with_invalid_magic_number ... ok [INFO] [stdout] test io::reader::index::tests::test_read_unplaced_unmapped_record_count ... ok [INFO] [stdout] test io::writer::index::reference_sequences::bins::chunks::tests::test_write_chunks ... ok [INFO] [stdout] test binning_index::index::reference_sequence::index::binned_index::tests::test_last_first_start_position ... ok [INFO] [stdout] test io::reader::index::header::reference_sequence_names::tests::test_read_names_with_trailing_data ... ok [INFO] [stdout] test io::writer::index::header::tests::test_write_aux ... ok [INFO] [stdout] test io::indexed_records::tests::test_next ... ok [INFO] [stdout] test io::writer::index::tests::test_write_magic ... ok [INFO] [stdout] test io::reader::index::reference_sequences::bins::tests::test_read_bins ... ok [INFO] [stdout] test io::reader::index::header::tests::test_read_aux ... ok [INFO] [stdout] test io::reader::index::header::reference_sequence_names::tests::test_read_names_with_multiple_buffer_fills ... ok [INFO] [stdout] test io::reader::index::header::reference_sequence_names::tests::test_read_names_with_duplicate_name ... ok [INFO] [stdout] test binning_index::indexer::tests::test_build ... ok [INFO] [stdout] test io::reader::index::header::reference_sequence_names::tests::test_read_reference_sequence_names ... ok [INFO] [stdout] test binning_index::index::reference_sequence::index::binned_index::tests::test_min_offset ... ok [INFO] [stdout] test io::writer::index::header::reference_sequence_names::tests::test_write_reference_sequence_names ... ok [INFO] [stdout] test io::writer::index::reference_sequences::metadata::tests::test_write_metadata ... ok [INFO] [stdout] test r#async::io::reader::index::magic_number::tests::test_read_magic_number ... ok [INFO] [stdout] test r#async::io::writer::index::header::tests::test_write_header ... ok [INFO] [stdout] test r#async::io::writer::index::reference_sequences::metadata::tests::test_write_metadata ... ok [INFO] [stdout] test r#async::io::reader::index::header::tests::test_read_header ... ok [INFO] [stdout] test r#async::io::writer::index::magic_number::tests::test_write_magic_number ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 53 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_fasta-00a3f7bed743d22e) [INFO] [stdout] [INFO] [stdout] running 19 tests [INFO] [stdout] test fai::record::tests::test_from_str ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test io::writer::tests::test_new ... ok [INFO] [stdout] test io::indexer::tests::test_index_record_with_invalid_line_bases ... ok [INFO] [stdout] test io::indexer::tests::test_consume_sequence_line ... ok [INFO] [stdout] test io::indexer::tests::test_index_record_with_invalid_line_width ... ok [INFO] [stdout] test io::writer::record::sequence::tests::test_write_sequence ... ok [INFO] [stdout] test io::reader::tests::test_read_definition ... ok [INFO] [stdout] test io::reader::sequence::tests::test_read_sequence_limit ... ok [INFO] [stdout] test record::definition::tests::test_from_str ... ok [INFO] [stdout] test io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::indexer::tests::test_index_record_with_empty_sequence ... ok [INFO] [stdout] test io::writer::record::definition::tests::test_write_definition ... ok [INFO] [stdout] test io::reader::sequence::tests::test_read_sequence ... ok [INFO] [stdout] test record::sequence::complement::tests::test_complement ... ok [INFO] [stdout] test record::sequence::complement::tests::test_next ... ok [INFO] [stdout] test record::definition::tests::test_fmt ... ok [INFO] [stdout] test repository::adapters::empty::tests::test_get ... ok [INFO] [stdout] test repository::tests::test_get ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_fastq-9674eebe0419f035) [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test io::writer::builder::tests::test_default ... ok [INFO] [stdout] test fai::record::tests::test_from_str ... ok [INFO] [stdout] test io::reader::record::tests::test_consume_plus_line ... ok [INFO] [stdout] test record::tests::test_clear ... ok [INFO] [stdout] test fai::io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::reader::record::definition::tests::test_read_definition ... ok [INFO] [stdout] test io::indexer::tests::test_index_record ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record ... ok [INFO] [stdout] test io::reader::tests::test_read_record ... ok [INFO] [stdout] test io::reader::record::tests::test_read_line ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_gff-77c8198e03acdc41) [INFO] [stdout] [INFO] [stdout] running 44 tests [INFO] [stdout] test feature::record::strand::tests::test_default ... ok [INFO] [stdout] test directive::tests::test_value ... ok [INFO] [stdout] test directive::tests::test_key ... ok [INFO] [stdout] test directive_buf::value::genome_build::tests::test_fmt ... ok [INFO] [stdout] test io::reader::line::tests::test_read_line ... ok [INFO] [stdout] test directive_buf::value::gff_version::tests::test_fmt ... ok [INFO] [stdout] test directive_buf::value::gff_version::tests::test_from_str ... ok [INFO] [stdout] test feature::record_buf::builder::tests::test_default ... ok [INFO] [stdout] test io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::writer::line::comment::tests::test_write_comment ... ok [INFO] [stdout] test directive_buf::value::genome_build::tests::test_from_str ... ok [INFO] [stdout] test directive_buf::value::sequence_region::tests::test_fmt ... ok [INFO] [stdout] test directive_buf::value::sequence_region::tests::test_from_str ... ok [INFO] [stdout] test io::reader::tests::test_records ... ok [INFO] [stdout] test feature::record_buf::builder::tests::test_build ... ok [INFO] [stdout] test io::writer::line::directive::tests::test_write_directive ... ok [INFO] [stdout] test io::reader::tests::test_records_with_fasta_directive ... ok [INFO] [stdout] test io::writer::line::directive::value::genome_build::tests::test_write_genome_build ... ok [INFO] [stdout] test io::writer::line::record::attributes::field::tag::tests::test_write_tag ... ok [INFO] [stdout] test io::writer::line::directive::value::gff_version::tests::test_write_gff_version ... ok [INFO] [stdout] test io::writer::line::record::attributes::field::tests::test_write_field ... ok [INFO] [stdout] test io::writer::line::record::attributes::field::value::tests::test_write_value ... ok [INFO] [stdout] test io::writer::line::record::phase::tests::test_write_phase ... ok [INFO] [stdout] test io::writer::line::directive::value::sequence_region::tests::test_write_sequence_region ... ok [INFO] [stdout] test io::writer::line::record::reference_sequence_name::tests::test_write_reference_sequence_name ... ok [INFO] [stdout] test io::writer::line::record::attributes::tests::test_write_attributes ... ok [INFO] [stdout] test io::writer::line::record::score::tests::test_write_score ... ok [INFO] [stdout] test io::writer::line::record::position::tests::test_write_position ... ok [INFO] [stdout] test io::writer::line::record::source::tests::test_write_source ... ok [INFO] [stdout] test io::writer::line::record::tests::test_write_record ... ok [INFO] [stdout] test io::writer::line::record::ty::tests::test_write_type ... ok [INFO] [stdout] test io::writer::line::tests::test_write_line ... ok [INFO] [stdout] test record::attributes::field::tag::tests::test_parse_tag ... ok [INFO] [stdout] test io::writer::line::record::strand::tests::test_write_strand ... ok [INFO] [stdout] test record::attributes::field::tests::test_next ... ok [INFO] [stdout] test record::attributes::field::value::array::tests::test_iter ... ok [INFO] [stdout] test record::attributes::field::value::tests::test_is_array ... ok [INFO] [stdout] test record::attributes::tests::test_get ... ok [INFO] [stdout] test record::attributes::tests::test_is_empty ... ok [INFO] [stdout] test record::tests::test_parse_strand ... ok [INFO] [stdout] test record::tests::test_parse_score ... ok [INFO] [stdout] test record::attributes::tests::test_iter ... ok [INFO] [stdout] test record::attributes::field::value::tests::test_parse_value ... ok [INFO] [stdout] test record::tests::test_parse_phase ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 44 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_gtf-cb1e7eb7838138c0) [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test io::writer::line::record::position::tests::test_write_position ... ok [INFO] [stdout] test io::writer::line::record::attributes::field::value::tests::test_write_value ... ok [INFO] [stdout] test io::writer::line::comment::tests::test_write_comment ... ok [INFO] [stdout] test io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::writer::line::record::score::tests::test_write_score ... ok [INFO] [stdout] test io::writer::line::record::source::tests::test_write_source ... ok [INFO] [stdout] test io::writer::line::record::phase::tests::test_write_phase ... ok [INFO] [stdout] test io::writer::line::record::attributes::field::tests::test_write_field ... ok [INFO] [stdout] test io::writer::line::record::reference_sequence_name::tests::test_write_reference_sequence_name ... ok [INFO] [stdout] test io::writer::line::record::attributes::tests::test_write_attributes ... ok [INFO] [stdout] test io::writer::line::record::strand::tests::test_write_strand ... ok [INFO] [stdout] test io::writer::line::record::ty::tests::test_write_type ... ok [INFO] [stdout] test record::attributes::tests::test_get ... ok [INFO] [stdout] test record::attributes::field::tests::test_parse_field ... ok [INFO] [stdout] test record::attributes::tests::test_is_empty ... ok [INFO] [stdout] test record::attributes::tests::test_iter ... ok [INFO] [stdout] test record::attributes::tests::test_escape_decode ... ok [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_htsget-09dd67685bf6050b) [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test response::error::tests::test_fmt ... ok [INFO] [stdout] test reads::format::tests::test_from_format_for_crate_format ... ok [INFO] [stdout] test request::payload::regions::tests::test_resolve_interval ... ok [INFO] [stdout] test variants::format::tests::test_from_format_for_crate_format ... ok [INFO] [stdout] test request::payload::tests::test_serialize ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_refget-72de5db22c95a4a2) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test sequence::service::tests::test_deserialize_subsequence_limit ... ok [INFO] [stdout] test sequence::builder::tests::test_resolve_interval ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_sam-00983656a8bb1164) [INFO] [stdout] [INFO] [stdout] running 190 tests [INFO] [stdout] test alignment::record::cigar::op::kind::tests::test_consumes_read ... ok [INFO] [stdout] test alignment::record::cigar::op::kind::tests::test_consumes_reference ... ok [INFO] [stdout] test alignment::record::flags::tests::test_default ... ok [INFO] [stdout] test alignment::record::flags::tests::test_from_flags_for_u16 ... ok [INFO] [stdout] test alignment::record::flags::tests::test_contains ... ok [INFO] [stdout] test alignment::record::flags::tests::test_from_u16_for_flags ... ok [INFO] [stdout] test alignment::record::mapping_quality::tests::test_from_mapping_quality_for_u8 ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_f32_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_u16_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_i32_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_i16_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_i8_for_value ... ok [INFO] [stdout] test alignment::record::mapping_quality::tests::test_try_from_u8_for_mapping_quality ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_u32_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_u8_for_value ... ok [INFO] [stdout] test alignment::record::cigar::tests::test_read_length ... ok [INFO] [stdout] test alignment::record::cigar::tests::test_into_iter ... ok [INFO] [stdout] test alignment::record::sequence::tests::test_into_iter ... ok [INFO] [stdout] test alignment::record::cigar::tests::test_alignment_span ... ok [INFO] [stdout] test alignment::record::quality_scores::tests::test_into_iter ... ok [INFO] [stdout] test alignment::record::cigar::iter::try_simplify::tests::test_next ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::array::tests::test_subtype ... ok [INFO] [stdout] test alignment::record::tests::test_alignment_end ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_i8_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_f32_for_value ... ok [INFO] [stdout] test alignment::record_buf::builder::tests::test_default ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_i16_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_i32_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_u16_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_u32_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_from_vec_u8_for_value ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_try_from_i64_for_value ... ok [INFO] [stdout] test alignment::record::data::field::tag::tests::test_fmt_debug ... ok [INFO] [stdout] test alignment::record_buf::data::tests::test_remove_with_multiple_removes ... ok [INFO] [stdout] test alignment::record_buf::data::field::value::tests::test_ty ... ok [INFO] [stdout] test header::parser::record::kind::tests::test_parse_kind ... ok [INFO] [stdout] test header::parser::record::tests::test_consume_prefix ... ok [INFO] [stdout] test header::parser::record::value::comment::tests::test_parse_comment ... ok [INFO] [stdout] test header::builder::tests::test_default ... ok [INFO] [stdout] test header::parser::record::value::map::field::tag::tests::test_parse_tag ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::tests::test_parse_value ... ok [INFO] [stdout] test header::parser::record::value::map::program::tests::test_parse_program ... ok [INFO] [stdout] test header::parser::record::value::map::read_group::tests::test_parse_read_group ... ok [INFO] [stdout] test header::parser::record::value::map::reference_sequence::length::tests::test_parse_length ... ok [INFO] [stdout] test header::parser::record::value::map::reference_sequence::tests::test_parse_header ... ok [INFO] [stdout] test header::parser::record::value::map::reference_sequence::tests::test_parse_header_with_missing_length ... ok [INFO] [stdout] test header::parser::record::value::map::reference_sequence::tests::test_parse_header_with_missing_name ... ok [INFO] [stdout] test header::parser::record::value::map::reference_sequence::tests::test_parse_header_with_invalid_length ... ok [INFO] [stdout] test header::parser::record::value::map::program::tests::test_parse_program_with_missing_id ... ok [INFO] [stdout] test header::parser::tests::test_parse_with_duplicate_program_ids ... ok [INFO] [stdout] test fs::index::tests::test_is_coordinate_sorted ... ok [INFO] [stdout] test header::builder::tests::test_build ... ok [INFO] [stdout] test header::parser::record::value::map::header::tests::test_parse_header_with_missing_version ... ok [INFO] [stdout] test header::parser::tests::test_parse_with_duplicate_read_group_ids ... ok [INFO] [stdout] test header::parser::tests::test_parse_without_hd ... ok [INFO] [stdout] test header::parser::tests::test_parse_with_duplicate_reference_sequence_names ... ok [INFO] [stdout] test header::parser::record::value::map::read_group::tests::test_parse_read_group_with_missing_id ... ok [INFO] [stdout] test header::programs::tests::test_add ... ok [INFO] [stdout] test header::parser::record::value::map::header::tests::test_parse_header ... ok [INFO] [stdout] test header::parser::record::value::map::header::version::tests::test_parse_version ... ok [INFO] [stdout] test header::programs::tests::test_leaves ... ok [INFO] [stdout] test header::parser::tests::test_parse_with_multiple_hd ... ok [INFO] [stdout] test header::parser::tests::test_extract_version ... ok [INFO] [stdout] test header::parser::tests::test_parse ... ok [INFO] [stdout] test header::record::value::map::header::tag::tests::test_as_ref_u8_2_array_for_standard ... ok [INFO] [stdout] test header::parser::tests::test_parse_with_empty_input ... ok [INFO] [stdout] test header::programs::tests::test_leaves_with_cycle ... ok [INFO] [stdout] test header::record::kind::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::header::tag::tests::test_from_standard_for_u8_2_array ... ok [INFO] [stdout] test header::record::value::map::header::builder::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::header::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::header::version::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::header::tag::tests::test_try_from_u8_array_for_standard ... ok [INFO] [stdout] test header::record::value::map::header::version::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::program::tag::tests::test_as_ref_u8_2_array_for_standard ... ok [INFO] [stdout] test header::record::value::map::read_group::tag::tests::test_as_ref_u8_2_array_for_standard ... ok [INFO] [stdout] test header::record::value::map::read_group::tag::tests::test_from_standard_for_u8_2_array ... ok [INFO] [stdout] test header::record::value::map::program::tag::tests::test_from_standard_for_u8_2_array ... ok [INFO] [stdout] test header::record::value::map::read_group::tag::tests::test_try_from_u8_array_for_standard ... ok [INFO] [stdout] test header::record::value::map::header::version::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::md5_checksum::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::program::tag::tests::test_try_from_u8_array_for_standard ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::md5_checksum::tests::test_from_md5_checksum_for_u8_array ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::md5_checksum::tests::test_from_u8_array_for_md5_checksum ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::md5_checksum::tests::test_parse ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::builder::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::tag::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::tag::other::tests::test_fmt_debug ... ok [INFO] [stdout] test header::record::value::map::tag::tests::test_from_str_for_tag ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_build_index_src ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::tag::tests::test_as_ref_u8_2_array_for_standard ... ok [INFO] [stdout] test io::reader::header::tests::test_read_header_with_multiple_buffer_fills ... ok [INFO] [stdout] test io::reader::header::tests::test_read_header_with_no_header ... ok [INFO] [stdout] test header::record::value::map::reference_sequence::tag::tests::test_from_standard_for_u8_2_array ... ok [INFO] [stdout] test io::reader::record::tests::test_read_record ... ok [INFO] [stdout] test io::reader::record_buf::cigar::op::kind::tests::test_parse_kind ... ok [INFO] [stdout] test io::reader::header::tests::test_read_header_with_no_records ... ok [INFO] [stdout] test io::reader::record_buf::data::field::tag::tests::test_parse_tag ... ok [INFO] [stdout] test io::reader::record_buf::data::field::tests::test_parse_field ... ok [INFO] [stdout] test io::reader::record_buf::data::field::value::array::subtype::tests::test_parse_subtype ... ok [INFO] [stdout] test io::reader::record_buf::cigar::op::tests::test_parse_op ... ok [INFO] [stdout] test io::reader::record_buf::data::tests::test_parse_data ... ok [INFO] [stdout] test io::reader::record_buf::flags::tests::test_parse_flags ... ok [INFO] [stdout] test io::reader::record_buf::data::field::ty::tests::test_parse_type ... ok [INFO] [stdout] test io::reader::record_buf::quality_scores::tests::test_parse_quality_scores ... ok [INFO] [stdout] test io::reader::record_buf::cigar::tests::test_parse_cigar ... ok [INFO] [stdout] test io::reader::record_buf::reference_sequence_id::tests::test_parse_reference_sequence_id ... ok [INFO] [stdout] test io::reader::record_buf::sequence::tests::test_parse_sequence ... ok [INFO] [stdout] test io::reader::record_buf::name::tests::test_parse_name ... ok [INFO] [stdout] test io::reader::record_buf::template_length::tests::test_parse_template_length ... ok [INFO] [stdout] test io::reader::record_buf::tests::test_parse_mate_reference_sequence_id ... ok [INFO] [stdout] test io::reader::record_buf::data::field::value::tests::test_get_value ... ok [INFO] [stdout] test io::reader::record_buf::data::field::value::array::tests::test_parse_array ... ok [INFO] [stdout] test io::writer::header::record::kind::tests::test_write_kind ... ok [INFO] [stdout] test io::reader::record_buf::mapping_quality::tests::test_mapping_quality ... ok [INFO] [stdout] test io::writer::header::record::value::map::header::version::tests::test_write_version_field ... ok [INFO] [stdout] test io::writer::header::record::value::map::reference_sequence::name::tests::test_is_valid_name ... ok [INFO] [stdout] test io::writer::header::record::value::map::tag::tests::test_is_valid ... ok [INFO] [stdout] test io::reader::record_buf::tests::test_parse_with_data ... ok [INFO] [stdout] test io::writer::header::record::value::map::tag::tests::test_write_tag ... ok [INFO] [stdout] test io::writer::header::record::value::map::tests::test_is_valid_value ... ok [INFO] [stdout] test io::reader::record_buf::position::tests::test_parse_alignment_start ... ok [INFO] [stdout] test io::writer::header::record::value::map::reference_sequence::length::tests::test_write_length_field ... ok [INFO] [stdout] test io::writer::record::cigar::tests::test_write_kind ... ok [INFO] [stdout] test io::writer::record::cigar::tests::test_write_cigar ... ok [INFO] [stdout] test io::writer::header::tests::test_write_header ... ok [INFO] [stdout] test io::writer::record::cigar::tests::test_write_op ... ok [INFO] [stdout] test io::writer::record::data::field::tag::tests::test_is_valid ... ok [INFO] [stdout] test io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::writer::record::data::field::tag::tests::test_put_tag ... ok [INFO] [stdout] test io::writer::record::data::field::tests::test_write_field ... ok [INFO] [stdout] test io::writer::record::data::field::value::character::tests::test_is_valid_character ... ok [INFO] [stdout] test io::writer::record::data::field::ty::tests::test_write_type ... ok [INFO] [stdout] test io::writer::record::data::field::value::character::tests::test_write_character ... ok [INFO] [stdout] test io::writer::record::data::field::value::array::subtype::tests::test_write_subtype ... ok [INFO] [stdout] test io::writer::record::data::field::value::hex::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::data::field::value::float::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::data::field::value::array::tests::test_write_array ... ok [INFO] [stdout] test io::writer::record::data::field::value::string::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::data::field::value::string::tests::test_write_string ... ok [INFO] [stdout] test io::writer::record::mapping_quality::tests::test_write_mapping_quality ... ok [INFO] [stdout] test io::writer::record::data::field::value::float::tests::test_write_float ... ok [INFO] [stdout] test io::writer::record::name::tests::test_write_name ... ok [INFO] [stdout] test io::writer::record::name::tests::test_write_name_with_invalid_name ... ok [INFO] [stdout] test io::writer::record::data::field::value::tests::test_write_value ... ok [INFO] [stdout] test io::writer::record::reference_sequence_name::tests::test_write_reference_sequence_name ... ok [INFO] [stdout] test io::writer::record::data::tests::test_write_data ... ok [INFO] [stdout] test io::writer::record::flags::tests::test_write_flags ... ok [INFO] [stdout] test io::writer::record::sequence::tests::test_is_valid_base ... ok [INFO] [stdout] test io::writer::record::sequence::tests::test_write_sequence ... ok [INFO] [stdout] test io::writer::record::template_length::tests::test_write_template_length ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record_with_data ... ok [INFO] [stdout] test io::writer::record::data::field::value::hex::tests::test_write_hex ... ok [INFO] [stdout] test io::writer::record::quality_scores::tests::test_write_quality_scores ... ok [INFO] [stdout] test io::writer::record::reference_sequence_name::tests::test_write_mate_reference_sequence_name ... ok [INFO] [stdout] test io::writer::record::position::tests::test_write_position ... ok [INFO] [stdout] test record::data::field::tests::test_parse_field ... ok [INFO] [stdout] test record::data::field::ty::tests::test_parse_type ... ok [INFO] [stdout] test record::data::field::value::array::subtype::tests::test_parse_subtype ... ok [INFO] [stdout] test record::data::field::value::array::tests::test_parse_array ... ok [INFO] [stdout] test record::cigar::tests::test_len ... ok [INFO] [stdout] test record::data::field::value::array::values::tests::test_iter ... ok [INFO] [stdout] test record::data::field::value::base_modifications::group::modification::tests::test_try_from_u8_for_modification ... ok [INFO] [stdout] test record::data::field::value::base_modifications::group::status::tests::test_default ... ok [INFO] [stdout] test record::data::field::value::base_modifications::group::strand::tests::test_try_from_u8_for_strand ... ok [INFO] [stdout] test record::data::field::value::base_modifications::group::unmodified_base::tests::test_complement ... ok [INFO] [stdout] test record::data::field::tag::tests::test_parse_tag ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::group::status::tests::test_parse_status ... ok [INFO] [stdout] test record::data::field::value::base_modifications::group::unmodified_base::tests::test_from_unmodified_base_for_u8 ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::group::strand::tests::test_parse_strand ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::group::tests::test_consume_terminator ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::group::unmodified_base::tests::test_parse_unmodified_base ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::group::tests::test_parse_group ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::group::modifications::tests::test_parse_modifications ... ok [INFO] [stdout] test record::data::field::value::base_modifications::parser::tests::test_parse ... ok [INFO] [stdout] test record::data::field::value::array::values::tests::test_len ... ok [INFO] [stdout] test record::data::field::value::base_modifications::group::unmodified_base::tests::test_try_from_u8_for_unmodified_base ... ok [INFO] [stdout] test record::data::tests::test_get ... ok [INFO] [stdout] test record::data::tests::test_is_empty ... ok [INFO] [stdout] test record::data::field::value::integer::tests::test_parse_integer_value ... ok [INFO] [stdout] test record::data::tests::test_iter ... ok [INFO] [stdout] test record::fields::bounds::tests::test_ranges ... ok [INFO] [stdout] test r#async::io::reader::header::tests::test_read_header_with_no_records ... ok [INFO] [stdout] test r#async::io::reader::header::tests::test_read_header_with_no_header ... ok [INFO] [stdout] test record::quality_scores::tests::test_iter ... ok [INFO] [stdout] test record::sequence::tests::test_crate_alignment_record_sequence_iter ... ok [INFO] [stdout] test r#async::io::reader::tests::test_read_line ... ok [INFO] [stdout] test r#async::io::reader::record::tests::test_read_record ... ok [INFO] [stdout] test record::data::field::value::tests::test_parse_value ... ok [INFO] [stdout] test r#async::io::reader::header::tests::test_read_header_with_multiple_buffer_fills ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 190 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_tabix-1e7906ad8dcb83ca) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test io::reader::index::magic_number::tests::test_read_magic_with_invalid_magic_number ... ok [INFO] [stdout] test io::reader::index::tests::test_read_unplaced_unmapped_record_count ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_push_ext ... ok [INFO] [stdout] test io::writer::index::tests::test_write_index ... ok [INFO] [stdout] test io::writer::index::reference_sequences::metadata::tests::test_write_metadata ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_util-85ec45360f54730d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/noodles_vcf-9ceb7a20b1820058) [INFO] [stdout] [INFO] [stdout] running 193 tests [INFO] [stdout] test header::file_format::tests::test_default ... ok [INFO] [stdout] test header::parser::record::value::map::field::tests::test_consume_separator ... ok [INFO] [stdout] test header::parser::record::tests::test_consume_prefix ... ok [INFO] [stdout] test header::parser::record::value::map::format::ty::tests::test_parse_type ... ok [INFO] [stdout] test header::parser::record::value::map::field::key::tests::test_parse_key ... ok [INFO] [stdout] test header::parser::builder::tests::test_default ... ok [INFO] [stdout] test header::parser::record::key::tests::test_parse_key ... ok [INFO] [stdout] test header::parser::record::value::map::contig::tests::test_parse_contig ... ok [INFO] [stdout] test header::parser::record::value::map::alternative_allele::tests::test_parse_filter ... ok [INFO] [stdout] test header::builder::tests::test_default ... ok [INFO] [stdout] test header::parser::record::value::map::format::tests::test_parse_format ... ok [INFO] [stdout] test header::parser::record::value::map::filter::tests::test_parse_filter ... ok [INFO] [stdout] test header::parser::record::value::map::info::number::tests::test_parse_number ... ok [INFO] [stdout] test header::parser::record::value::map::format::number::tests::test_parse_number ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::string::tests::test_parse_raw_string ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::tests::test_parse_value ... ok [INFO] [stdout] test header::parser::record::value::map::field::value::string::tests::test_parse_escaped_string ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_other ... ok [INFO] [stdout] test header::parser::record::value::map::tests::test_is_map ... ok [INFO] [stdout] test header::parser::record::value::string::file_format::tests::test_parse_file_format ... ok [INFO] [stdout] test header::parser::record::value::string::tests::test_parse_string ... ok [INFO] [stdout] test header::builder::tests::test_build ... ok [INFO] [stdout] test header::parser::record::value::map::info::ty::tests::test_parse_type ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_data_after_header ... ok [INFO] [stdout] test header::parser::record::value::map::info::tests::test_parse_info ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_meta ... ok [INFO] [stdout] test header::parser::record::value::map::other::tests::test_parse_pedigree ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_sample_names ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_missing_headers ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_invalid_headers ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_multiple_fileformats ... ok [INFO] [stdout] test header::parser::tests::test_from_str ... ok [INFO] [stdout] test header::parser::tests::test_from_str_without_file_format ... ok [INFO] [stdout] test header::record::key::other::tests::test_from_str ... ok [INFO] [stdout] test header::record::key::tests::test_fmt ... ok [INFO] [stdout] test header::record::key::tests::test_from ... ok [INFO] [stdout] test header::record::value::map::format::number::tests::test_default ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_default ... ok [INFO] [stdout] test header::parser::tests::test_from_str_with_duplicate_map_id ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_fmt ... ok [INFO] [stdout] test header::record::value::map::format::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::number::tests::test_default ... ok [INFO] [stdout] test header::record::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::contig::tag::tests::test_as_ref_str_for_standard ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::tag::other::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_default ... ok [INFO] [stdout] test header::string_maps::tests::test_default ... ok [INFO] [stdout] test header::string_maps::tests::test_from_str_with_file_format ... ok [INFO] [stdout] test header::string_maps::tests::test_from_str ... ok [INFO] [stdout] test header::record::value::map::info::ty::tests::test_fmt ... ok [INFO] [stdout] test header::string_maps::tests::test_parse_file_format ... ok [INFO] [stdout] test header::string_maps::tests::test_from_str_with_a_position_mismatch ... ok [INFO] [stdout] test header::tests::test_default ... ok [INFO] [stdout] test header::string_maps::tests::test_try_from_vcf_header_for_string_maps ... ok [INFO] [stdout] test io::indexed_reader::builder::tests::test_push_ext ... ok [INFO] [stdout] test header::string_maps::tests::test_from_str_with_mixed_positions ... ok [INFO] [stdout] test header::string_maps::tests::test_try_from_vcf_header_for_string_maps_with_idx ... ok [INFO] [stdout] test header::tests::test_insert_with_duplicate_keys ... ok [INFO] [stdout] test io::reader::header::tests::test_read_raw_header ... ok [INFO] [stdout] test io::reader::header::tests::test_read_raw_header_with_no_records ... ok [INFO] [stdout] test io::reader::header::tests::test_read_raw_header_with_missing_end_of_line ... ok [INFO] [stdout] test io::reader::record::tests::test_read_record ... ok [INFO] [stdout] test io::reader::record_buf::alternate_bases::tests::test_parse_alternate_bases ... ok [INFO] [stdout] test io::reader::header::tests::test_read_raw_header_with_no_header ... ok [INFO] [stdout] test io::reader::header::tests::test_read_raw_header_with_multiple_buffer_fills ... ok [INFO] [stdout] test io::reader::record_buf::filters::tests::test_parse_filters ... ok [INFO] [stdout] test io::reader::record_buf::ids::id::tests::test_parse_id ... ok [INFO] [stdout] test io::reader::record_buf::info::field::value::tests::test_parse_value_with_flag ... ok [INFO] [stdout] test io::reader::record_buf::info::field::tests::test_parse_field ... ok [INFO] [stdout] test io::reader::record_buf::info::field::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test io::reader::record_buf::info::field::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test io::reader::record_buf::info::field::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test io::reader::record_buf::info::field::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test io::reader::record_buf::info::tests::test_parse_info ... ok [INFO] [stdout] test io::reader::record_buf::position::tests::test_parse_position ... ok [INFO] [stdout] test io::reader::record_buf::reference_bases::tests::test_parse_reference_bases ... ok [INFO] [stdout] test io::reader::record_buf::reference_sequence_name::tests::test_parse_reference_sequence_name ... ok [INFO] [stdout] test io::reader::record_buf::quality_score::tests::test_parse_position ... ok [INFO] [stdout] test io::reader::record_buf::samples::keys::tests::test_parse_keys ... ok [INFO] [stdout] test io::reader::record_buf::samples::values::value::tests::test_parse_value_with_character ... ok [INFO] [stdout] test io::reader::record_buf::samples::values::tests::test_parse_values ... ok [INFO] [stdout] test io::reader::record_buf::samples::tests::test_parse_samples ... ok [INFO] [stdout] test io::reader::record_buf::samples::values::value::tests::test_parse_value_with_float ... ok [INFO] [stdout] test io::reader::record_buf::samples::values::value::tests::test_parse_value_with_integer ... ok [INFO] [stdout] test io::reader::tests::test_read_line ... ok [INFO] [stdout] test io::reader::record_buf::value::tests::test_percent_decode ... ok [INFO] [stdout] test io::reader::record_buf::samples::values::value::tests::test_parse_value_with_string ... ok [INFO] [stdout] test io::writer::header::record::key::tests::test_write_key ... ok [INFO] [stdout] test io::reader::tests::test_read_record ... ok [INFO] [stdout] test io::writer::header::record::tests::test_write_other ... ok [INFO] [stdout] test io::writer::header::record::value::map::alternative_allele::tests::test_write_alternative_allele ... ok [INFO] [stdout] test io::writer::header::record::value::map::contig::tests::test_write_contig ... ok [INFO] [stdout] test io::writer::header::record::value::map::filter::tests::test_write_filter ... ok [INFO] [stdout] test io::writer::header::record::value::map::format::number::tests::test_write_number ... ok [INFO] [stdout] test io::writer::header::record::value::map::format::tests::test_write_format ... ok [INFO] [stdout] test io::writer::header::record::value::file_format::tests::test_write_file_format ... ok [INFO] [stdout] test io::writer::header::record::value::map::format::ty::tests::test_write_type ... ok [INFO] [stdout] test io::writer::header::record::value::map::info::number::tests::test_write_number ... ok [INFO] [stdout] test io::reader::record_buf::ids::tests::test_parse_ids ... ok [INFO] [stdout] test io::writer::header::record::value::map::info::ty::tests::test_write_type ... ok [INFO] [stdout] test io::writer::header::record::value::map::meta::tests::test_write_meta ... ok [INFO] [stdout] test io::writer::header::record::value::map::info::tests::test_write_info ... ok [INFO] [stdout] test io::writer::header::record::value::map::tests::test_write_string ... ok [INFO] [stdout] test io::writer::header::tests::test_write_column_names ... ok [INFO] [stdout] test io::writer::header::record::value::string::tests::test_write_string ... ok [INFO] [stdout] test io::writer::record::alternate_bases::tests::test_write_alternate_bases ... ok [INFO] [stdout] test io::writer::record::filters::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::header::tests::test_write_header ... ok [INFO] [stdout] test io::writer::record::filters::tests::test_write_filters ... ok [INFO] [stdout] test io::writer::header::record::value::map::other::tests::test_write_other ... ok [INFO] [stdout] test io::writer::record::alternate_bases::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::ids::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::ids::tests::test_write_ids ... ok [INFO] [stdout] test io::writer::record::info::field::key::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::info::field::key::tests::test_write_key ... ok [INFO] [stdout] test io::writer::record::info::field::value::array::tests::test_write_array ... ok [INFO] [stdout] test io::writer::record::info::field::value::character::tests::test_write_character ... ok [INFO] [stdout] test io::writer::record::info::field::value::integer::tests::test_write_integer ... ok [INFO] [stdout] test io::writer::record::info::tests::test_write_info ... ok [INFO] [stdout] test io::writer::record::info::field::value::string::tests::test_write_string ... ok [INFO] [stdout] test io::writer::record::position::tests::test_write_position ... ok [INFO] [stdout] test io::writer::record::info::field::value::tests::test_write_value ... ok [INFO] [stdout] test io::writer::record::reference_bases::tests::test_resolve_base ... ok [INFO] [stdout] test io::writer::record::reference_bases::tests::test_write_reference_bases ... ok [INFO] [stdout] test io::writer::record::reference_sequence_name::tests::test_strip_symbol_delimiters ... ok [INFO] [stdout] test io::writer::record::quality_score::tests::test_write_quality_score ... ok [INFO] [stdout] test io::writer::record::samples::keys::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::reference_sequence_name::tests::test_is_valid ... ok [INFO] [stdout] test io::writer::record::reference_sequence_name::tests::test_write_reference_sequence_name ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::array::tests::test_write_array ... ok [INFO] [stdout] test io::writer::record::samples::keys::tests::test_write_keys ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::character::tests::test_write_character ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::genotype::tests::test_vcf_4_4_write_genotype ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::genotype::tests::test_write_position ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::string::tests::test_write_string ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::genotype::tests::test_write_phasing ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::tests::test_write_value ... ok [INFO] [stdout] test io::writer::record::samples::tests::test_write_samples ... ok [INFO] [stdout] test io::writer::record::tests::test_write_record ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::genotype::tests::test_vcf_4_0_write_genotype ... ok [INFO] [stdout] test record::alternate_bases::tests::test_iter ... ok [INFO] [stdout] test record::alternate_bases::tests::test_len ... ok [INFO] [stdout] test record::fields::bounds::tests::test_ranges ... ok [INFO] [stdout] test io::writer::tests::test_write_variant_record ... ok [INFO] [stdout] test io::writer::record::samples::sample::value::integer::tests::test_write_integer ... ok [INFO] [stdout] test record::filters::tests::test_is_empty ... ok [INFO] [stdout] test record::filters::tests::test_iter ... ok [INFO] [stdout] test record::filters::tests::test_len ... ok [INFO] [stdout] test record::ids::tests::test_is_empty ... ok [INFO] [stdout] test record::ids::tests::test_iter ... ok [INFO] [stdout] test record::alternate_bases::tests::test_is_empty ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_character_value ... ok [INFO] [stdout] test record::ids::tests::test_len ... ok [INFO] [stdout] test io::writer::tests::test_write_record_with_format ... ok [INFO] [stdout] test record::info::field::value::tests::test_parse_string_value ... ok [INFO] [stdout] test record::info::tests::test_is_empty ... ok [INFO] [stdout] test record::info::field::tests::test_next ... ok [INFO] [stdout] test record::info::tests::test_iter ... ok [INFO] [stdout] test record::samples::sample::tests::test_values ... ok [INFO] [stdout] test record::samples::keys::tests::test_iter ... ok [INFO] [stdout] test record::samples::series::tests::test_name ... ok [INFO] [stdout] test record::samples::series::value::genotype::tests::test_iter ... ok [INFO] [stdout] test record::samples::tests::test_is_empty ... ok [INFO] [stdout] test record::samples::tests::test_get_index ... ok [INFO] [stdout] test record::samples::series::value::tests::test_parse_value ... ok [INFO] [stdout] test record::samples::tests::test_iter ... ok [INFO] [stdout] test record::samples::tests::test_select ... ok [INFO] [stdout] test variant::record::info::field::key::tests::test_values ... ok [INFO] [stdout] test record::samples::series::tests::test_get ... ok [INFO] [stdout] test record::samples::tests::test_get ... ok [INFO] [stdout] test variant::record::info::field::value::array::values::tests::test_character_values ... ok [INFO] [stdout] test record::info::tests::test_get ... ok [INFO] [stdout] test variant::record::info::field::value::array::values::tests::test_integer_values ... ok [INFO] [stdout] test variant::record::info::field::value::array::values::tests::test_string_values ... ok [INFO] [stdout] test record::samples::sample::tests::test_iter ... ok [INFO] [stdout] test variant::record::samples::keys::key::tests::test_fmt ... ok [INFO] [stdout] test variant::record::samples::series::value::array::values::tests::test_character_values ... ok [INFO] [stdout] test variant::record::info::field::value::array::values::tests::test_float_values ... ok [INFO] [stdout] test variant::record::samples::series::value::array::values::tests::test_string_values ... ok [INFO] [stdout] test variant::record::samples::series::value::array::values::tests::test_integer_values ... ok [INFO] [stdout] test variant::record::tests::test_variant_end_with_samples_len ... ok [INFO] [stdout] test variant::record_buf::builder::tests::test_default ... ok [INFO] [stdout] test variant::record::tests::test_variant_span ... ok [INFO] [stdout] test variant::record_buf::info::tests::test_extend ... ok [INFO] [stdout] test variant::record_buf::samples::sample::value::genotype::allele::tests::test_from_str ... ok [INFO] [stdout] test variant::record_buf::samples::sample::value::genotype::tests::test_from_str ... ok [INFO] [stdout] test variant::record_buf::samples::series::tests::test_get ... ok [INFO] [stdout] test variant::record_buf::samples::series::tests::test_name ... ok [INFO] [stdout] test variant::record_buf::tests::test_default ... ok [INFO] [stdout] test variant::record::samples::series::value::array::values::tests::test_float_values ... ok [INFO] [stdout] test variant::record::tests::test_variant_end ... ok [INFO] [stdout] test variant::record::tests::test_variant_end_with_info_sv_len ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 193 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_bam [INFO] [stdout] [INFO] [stdout] running 63 tests [INFO] [stdout] test noodles-bam/src/bai.rs - bai (line 19) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/fs.rs - bai::fs::write (line 41) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/reader.rs - bai::io::reader::Reader (line 21) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/fs.rs - bai::fs::read (line 21) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/reader.rs - bai::io::reader::Reader::new (line 84) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/writer.rs - bai::io::writer::Writer (line 12) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/reader.rs - bai::io::reader::Reader::read_index (line 99) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 45) - compile ... ok [INFO] [stdout] test noodles-bam/src/fs/index.rs - fs::index::index (line 23) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/reader.rs - bai::io::reader::Reader::into_inner (line 65) ... ok [INFO] [stdout] test noodles-bam/src/bai/io/reader.rs - bai::io::reader::Reader::get_mut (line 51) ... ok [INFO] [stdout] test noodles-bam/src/bai/io/reader.rs - bai::io::reader::Reader::get_ref (line 37) ... ok [INFO] [stdout] test noodles-bam/src/bai/io/writer.rs - bai::io::writer::Writer::get_mut (line 46) ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader (line 37) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::header_reader (line 147) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::query (line 358) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::query_unmapped (line 399) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/writer.rs - bai::io::writer::Writer::get_ref (line 32) ... ok [INFO] [stdout] test noodles-bam/src/bai/io/writer.rs - bai::io::writer::Writer::new (line 79) ... ok [INFO] [stdout] test noodles-bam/src/bai/io/writer.rs - bai::io::writer::Writer::into_inner (line 60) ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::read_header (line 179) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::read_record_buf (line 208) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::record_bufs (line 275) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::records (line 299) - compile ... ok [INFO] [stdout] test noodles-bam/src/bai/io/writer.rs - bai::io::writer::Writer::write_index (line 91) ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::read_record (line 243) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 20) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 25) ... ok [INFO] [stdout] test noodles-bam/src/io/reader/header.rs - io::reader::header::Reader::raw_sam_header_reader (line 58) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader/header.rs - io::reader::header::Reader::read_magic_number (line 34) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader/header.rs - io::reader::header::Reader::read_reference_sequences (line 86) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 70) ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::get_ref (line 91) ... ok [INFO] [stdout] test noodles-bam/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 20) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader (line 61) ... ok [INFO] [stdout] test noodles-bam/src/lib.rs - (line 10) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader (line 72) ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::into_inner (line 119) ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader::get_mut (line 105) ... ok [INFO] [stdout] test noodles-bam/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 36) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer::get_mut (line 59) ... ok [INFO] [stdout] test noodles-bam/src/lib.rs - (line 28) - compile ... ok [INFO] [stdout] test noodles-bam/src/io/reader.rs - io::reader::Reader>::new (line 327) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer::into_inner (line 72) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer>::try_finish (line 153) ... ok [INFO] [stdout] test noodles-bam/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 36) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer::get_ref (line 46) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer (line 19) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer>::new (line 137) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer::write_header (line 88) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::data (line 187) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::cigar (line 148) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::reference_sequence_id (line 35) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::quality_scores (line 174) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::mate_alignment_start (line 109) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::name (line 135) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::flags (line 78) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::mapping_quality (line 65) ... ok [INFO] [stdout] test noodles-bam/src/io/writer.rs - io::writer::Writer::write_record (line 108) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::sequence (line 161) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::alignment_start (line 52) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::mate_reference_sequence_id (line 92) ... ok [INFO] [stdout] test noodles-bam/src/record.rs - record::Record::template_length (line 122) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 63 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_bcf [INFO] [stdout] [INFO] [stdout] running 43 tests [INFO] [stdout] test noodles-bcf/src/fs/index.rs - fs::index::index (line 20) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 42) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::header_reader (line 94) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::read_record (line 178) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::query (line 272) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::read_header (line 123) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::record_bufs (line 200) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::read_record_buf (line 146) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::records (line 222) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 36) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader/header.rs - io::reader::header::Reader::raw_vcf_header_reader (line 83) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader/header.rs - io::reader::header::Reader::read_format_version (line 57) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 67) ... ok [INFO] [stdout] test noodles-bcf/src/io/reader/header.rs - io::reader::header::Reader::read_magic_number (line 34) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::get_ref (line 38) ... ok [INFO] [stdout] test noodles-bcf/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 24) ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::get_mut (line 52) ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader::into_inner (line 66) ... ok [INFO] [stdout] test noodles-bcf/src/io/reader.rs - io::reader::Reader>::new (line 254) ... ok [INFO] [stdout] test noodles-bcf/src/io/reader/builder.rs - io::reader::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test noodles-bcf/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 53) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 36) - compile ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer::into_inner (line 60) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer::get_mut (line 46) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer::get_ref (line 32) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer/builder.rs - io::writer::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 53) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer>::new (line 143) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::end (line 119) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::alternate_bases (line 186) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer::write_header (line 79) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer>::try_finish (line 159) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::ids (line 159) ... ok [INFO] [stdout] test noodles-bcf/src/io/writer.rs - io::writer::Writer::write_record (line 103) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::info (line 214) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::filters (line 200) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::quality_score (line 145) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::samples (line 228) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::reference_bases (line 173) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::reference_sequence_id (line 44) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::reference_sequence_name (line 59) ... ok [INFO] [stdout] test noodles-bcf/src/record/samples.rs - record::samples::Samples<'r>::format_count (line 34) ... ok [INFO] [stdout] test noodles-bcf/src/record.rs - record::Record::variant_start (line 92) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 43 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_bed [INFO] [stdout] [INFO] [stdout] running 25 tests [INFO] [stdout] test noodles-bed/src/fs/index.rs - fs::index::index (line 18) - compile ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader<4,R>::read_record (line 108) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader<3,R>::read_record (line 87) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader<6,R>::read_record (line 150) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader<5,R>::read_record (line 129) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader::get_mut (line 36) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader::into_inner (line 50) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader::new (line 69) ... ok [INFO] [stdout] test noodles-bed/src/io/reader.rs - io::reader::Reader::get_ref (line 22) ... ok [INFO] [stdout] test noodles-bed/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 18) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<5,W>::write_record (line 167) ... ok [INFO] [stdout] test noodles-bed/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 19) - compile ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<4,W>::write_feature_record (line 143) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<3,W>::write_record (line 87) ... ok [INFO] [stdout] test noodles-bed/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 34) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer::get_ref (line 22) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<4,W>::write_record (line 127) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<3,W>::write_feature_record (line 103) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<5,W>::write_feature_record (line 183) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<6,W>::write_feature_record (line 223) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer::get_mut (line 36) ... ok [INFO] [stdout] test noodles-bed/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 35) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer<6,W>::write_record (line 207) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer::into_inner (line 50) ... ok [INFO] [stdout] test noodles-bed/src/io/writer.rs - io::writer::Writer::new (line 69) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 25 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_bgzf [INFO] [stdout] [INFO] [stdout] running 91 tests [INFO] [stdout] test noodles-bgzf/src/async/fs.rs - r#async::fs::open (line 13) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::get_mut (line 72) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::get_pin_mut (line 87) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::into_inner (line 103) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::get_ref (line 57) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::new (line 44) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/fs.rs - gzi::r#async::fs::read (line 20) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/fs.rs - fs::open (line 11) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::position (line 118) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/fs.rs - gzi::r#async::fs::write (line 43) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::virtual_position (line 132) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader/builder.rs - r#async::io::reader::builder::Builder::build_from_reader (line 37) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/reader.rs - gzi::r#async::io::reader::Reader::read_index (line 80) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/writer.rs - r#async::io::writer::Writer::new (line 46) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader/builder.rs - r#async::io::reader::builder::Builder::set_worker_count (line 22) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/writer.rs - r#async::io::writer::Writer::into_inner (line 58) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/writer/builder.rs - r#async::io::writer::builder::Builder::set_worker_count (line 45) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/writer/builder.rs - r#async::io::writer::builder::Builder::build_from_writer (line 60) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/reader.rs - gzi::r#async::io::reader::Reader::get_ref (line 18) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/writer.rs - gzi::r#async::io::writer::Writer::get_ref (line 18) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/reader.rs - gzi::r#async::io::reader::Reader::into_inner (line 46) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/reader.rs - gzi::r#async::io::reader::Reader::new (line 65) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/writer.rs - gzi::r#async::io::writer::Writer::get_mut (line 32) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/reader.rs - gzi::r#async::io::reader::Reader::get_mut (line 32) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/writer/builder.rs - r#async::io::writer::builder::Builder::set_compression_level (line 28) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/writer.rs - gzi::r#async::io::writer::Writer::new (line 65) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/fs.rs - gzi::fs::write (line 41) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/fs.rs - gzi::fs::read (line 21) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::seek (line 151) ... ok [INFO] [stdout] test noodles-bgzf/src/async/io/reader.rs - r#async::io::reader::Reader::seek_by_uncompressed_position (line 192) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/reader.rs - gzi::io::reader::Reader::read_index (line 80) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/writer.rs - gzi::r#async::io::writer::Writer::into_inner (line 46) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/reader.rs - gzi::io::reader::Reader::get_mut (line 32) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/index.rs - gzi::index::Index::query (line 19) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/reader.rs - gzi::io::reader::Reader::into_inner (line 46) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/reader.rs - gzi::io::reader::Reader::get_ref (line 18) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::index (line 114) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/writer.rs - gzi::io::writer::Writer::new (line 65) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::get_ref (line 23) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/writer.rs - gzi::io::writer::Writer::write_index (line 78) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/writer.rs - gzi::io::writer::Writer::get_mut (line 32) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::get_mut (line 37) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/writer.rs - gzi::io::writer::Writer::into_inner (line 46) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/reader.rs - gzi::io::reader::Reader::new (line 65) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::new (line 70) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::into_inner (line 51) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::position (line 86) ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/io/writer.rs - gzi::io::writer::Writer::get_ref (line 18) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader (line 22) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/gzi/async/io/writer.rs - gzi::r#async::io::writer::Writer::write_index (line 78) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_reader.rs - io::multithreaded_reader::MultithreadedReader::finish (line 83) ... ok [INFO] [stdout] test noodles-bgzf/src/io/indexed_reader.rs - io::indexed_reader::IndexedReader::virtual_position (line 100) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_reader.rs - io::multithreaded_reader::MultithreadedReader::virtual_position (line 69) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_reader.rs - io::multithreaded_reader::MultithreadedReader::new (line 122) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_reader.rs - io::multithreaded_reader::MultithreadedReader::position (line 55) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_reader.rs - io::multithreaded_reader::MultithreadedReader::get_mut (line 154) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_writer.rs - io::multithreaded_writer::MultithreadedWriter::finish (line 86) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_writer/builder.rs - io::multithreaded_writer::builder::Builder::build_from_writer (line 50) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_writer/builder.rs - io::multithreaded_writer::builder::Builder::set_compression_level (line 19) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 19) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_reader.rs - io::multithreaded_reader::MultithreadedReader::with_worker_count (line 135) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::get_mut (line 56) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_writer.rs - io::multithreaded_writer::MultithreadedWriter::new (line 55) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_writer.rs - io::multithreaded_writer::MultithreadedWriter::with_worker_count (line 68) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::into_inner (line 70) ... ok [INFO] [stdout] test noodles-bgzf/src/io/multithreaded_writer/builder.rs - io::multithreaded_writer::builder::Builder::set_worker_count (line 34) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::get_ref (line 42) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::new (line 89) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::position (line 102) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::virtual_position (line 116) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::into_inner (line 112) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::seek (line 168) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader.rs - io::reader::Reader::seek_by_uncompressed_position (line 192) ... ok [INFO] [stdout] test noodles-bgzf/src/lib.rs - (line 16) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/lib.rs - (line 27) - compile ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::virtual_position (line 144) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::new (line 85) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::get_ref (line 98) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer/compression_level.rs - io::writer::compression_level::CompressionLevel::get (line 41) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer/builder.rs - io::writer::builder::Builder::set_compression_level (line 18) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer (line 55) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 33) ... ok [INFO] [stdout] test noodles-bgzf/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 37) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer/compression_level.rs - io::writer::compression_level::CompressionLevel::new (line 28) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::position (line 126) ... ok [INFO] [stdout] test noodles-bgzf/src/virtual_position.rs - virtual_position::VirtualPosition::new (line 47) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::finish (line 206) ... ok [INFO] [stdout] test noodles-bgzf/src/virtual_position.rs - virtual_position::VirtualPosition::try_from (line 129) ... ok [INFO] [stdout] test noodles-bgzf/src/io/writer.rs - io::writer::Writer::try_finish (line 179) ... ok [INFO] [stdout] test noodles-bgzf/src/virtual_position.rs - virtual_position::VirtualPosition::compressed (line 72) ... ok [INFO] [stdout] test noodles-bgzf/src/virtual_position.rs - virtual_position::VirtualPosition::uncompressed (line 87) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 91 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_core [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test noodles-core/src/position.rs - position::Position::checked_add (line 59) ... ok [INFO] [stdout] test noodles-core/src/position.rs - position::Position::get (line 45) ... ok [INFO] [stdout] test noodles-core/src/region.rs - region::Region::end (line 98) ... ok [INFO] [stdout] test noodles-core/src/position.rs - position::Position::new (line 28) ... ok [INFO] [stdout] test noodles-core/src/region.rs - region::Region::interval (line 116) ... ok [INFO] [stdout] test noodles-core/src/region.rs - region::Region::name (line 62) ... ok [INFO] [stdout] test noodles-core/src/region.rs - region::Region::start (line 80) ... ok [INFO] [stdout] test noodles-core/src/region.rs - region::Region::new (line 39) ... ok [INFO] [stdout] test noodles-core/src/region/interval.rs - region::interval::Interval::start (line 26) ... ok [INFO] [stdout] test noodles-core/src/region/interval.rs - region::interval::Interval::intersects (line 85) ... ok [INFO] [stdout] test noodles-core/src/region/interval.rs - region::interval::Interval::end (line 46) ... ok [INFO] [stdout] test noodles-core/src/region/interval.rs - region::interval::Interval::contains (line 66) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_cram [INFO] [stdout] [INFO] [stdout] running 73 tests [INFO] [stdout] test noodles-cram/src/crai/fs.rs - crai::fs::read (line 17) - compile ... ok [INFO] [stdout] test noodles-cram/src/crai/fs.rs - crai::fs::write (line 37) - compile ... ok [INFO] [stdout] test noodles-cram/src/crai/io/reader.rs - crai::io::reader::Reader::read_index (line 37) - compile ... ok [INFO] [stdout] test noodles-cram/src/container/block_content_encoder_map.rs - container::block_content_encoder_map::BlockContentEncoderMap::builder (line 24) ... ok [INFO] [stdout] test noodles-cram/src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::build (line 82) ... ok [INFO] [stdout] test noodles-cram/src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::set_core_data_encoder (line 25) ... ok [INFO] [stdout] test noodles-cram/src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::set_data_series_encoder (line 38) ... ok [INFO] [stdout] test noodles-cram/src/container/compression_header/preservation_map/tag_sets/key.rs - container::compression_header::preservation_map::tag_sets::key::Key::new (line 17) ... ok [INFO] [stdout] test noodles-cram/src/container/block_content_encoder_map/builder.rs - container::block_content_encoder_map::builder::Builder::set_tag_values_encoder (line 61) ... ok [INFO] [stdout] test noodles-cram/src/container/compression_header/preservation_map/tag_sets/key.rs - container::compression_header::preservation_map::tag_sets::key::Key::ty (line 44) ... ok [INFO] [stdout] test noodles-cram/src/container/compression_header/preservation_map/tag_sets/key.rs - container::compression_header::preservation_map::tag_sets::key::Key::tag (line 30) ... ok [INFO] [stdout] test noodles-cram/src/crai/io/reader.rs - crai::io::reader::Reader::new (line 20) ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::alignment_span (line 111) ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::new (line 30) ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::landmark (line 157) ... ok [INFO] [stdout] test noodles-cram/src/fs/index.rs - fs::index::index (line 20) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 61) - compile ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::reference_sequence_id (line 65) ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::offset (line 134) ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::slice_length (line 180) ... ok [INFO] [stdout] test noodles-cram/src/file_definition/version.rs - file_definition::version::Version::major (line 27) ... ok [INFO] [stdout] test noodles-cram/src/crai/io/writer.rs - crai::io::writer::Writer::new (line 23) ... ok [INFO] [stdout] test noodles-cram/src/crai/io/writer.rs - crai::io::writer::Writer::finish (line 53) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader (line 28) - compile ... ok [INFO] [stdout] test noodles-cram/src/crai/io/writer.rs - crai::io::writer::Writer::get_ref (line 37) ... ok [INFO] [stdout] test noodles-cram/src/file_definition.rs - file_definition::FileDefinition::file_id (line 52) ... ok [INFO] [stdout] test noodles-cram/src/crai/record.rs - crai::record::Record::alignment_start (line 88) ... ok [INFO] [stdout] test noodles-cram/src/file_definition/version.rs - file_definition::version::Version::new (line 15) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::header_reader (line 118) - compile ... ok [INFO] [stdout] test noodles-cram/src/file_definition/version.rs - file_definition::version::Version::minor (line 40) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::new (line 100) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::read_container (line 213) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::read_file_definition (line 154) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::query (line 297) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::read_header (line 195) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::read_file_header (line 172) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::records (line 237) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::seek (line 266) - compile ... ok [INFO] [stdout] test noodles-cram/src/file_definition.rs - file_definition::FileDefinition::version (line 36) ... ok [INFO] [stdout] test noodles-cram/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 43) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 85) ... ok [INFO] [stdout] test noodles-cram/src/file_definition.rs - file_definition::FileDefinition::new (line 22) ... ok [INFO] [stdout] test noodles-cram/src/io/reader/container/slice.rs - io::reader::container::slice::Slice<'c>::records (line 62) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader/header.rs - io::reader::header::Reader::container_reader (line 105) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader/header.rs - io::reader::header::Reader::read_format_version (line 57) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader/header/container.rs - io::reader::header::container::Reader::raw_sam_header_reader (line 36) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 45) ... ok [INFO] [stdout] test noodles-cram/src/io/reader/header.rs - io::reader::header::Reader::read_magic_number (line 36) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader/header.rs - io::reader::header::Reader::read_file_id (line 79) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_reference_sequence_repository (line 25) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::get_mut (line 67) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::get_ref (line 53) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::into_inner (line 81) ... ok [INFO] [stdout] test noodles-cram/src/io/reader.rs - io::reader::Reader::position (line 281) ... ok [INFO] [stdout] test noodles-cram/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 95) - compile ... ok [INFO] [stdout] test noodles-cram/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 59) ... ok [INFO] [stdout] test noodles-cram/src/io/reader/builder.rs - io::reader::builder::Builder::set_reference_sequence_repository (line 22) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::get_ref (line 65) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::new (line 112) ... ok [INFO] [stdout] test noodles-cram/src/crai/io/writer.rs - crai::io::writer::Writer::write_index (line 69) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::try_finish (line 129) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::into_inner (line 93) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::get_mut (line 79) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::write_file_definition (line 151) ... ok [INFO] [stdout] test noodles-cram/src/io/writer/builder.rs - io::writer::builder::Builder::preserve_read_names (line 48) ... ok [INFO] [stdout] test noodles-cram/src/io/writer/builder.rs - io::writer::builder::Builder::encode_alignment_start_positions_as_deltas (line 65) ... ok [INFO] [stdout] test noodles-cram/src/io/writer/builder.rs - io::writer::builder::Builder::set_reference_sequence_repository (line 24) ... ok [INFO] [stdout] test noodles-cram/src/io/writer/builder.rs - io::writer::builder::Builder::set_block_content_encoder_map (line 79) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::write_header (line 195) ... ok [INFO] [stdout] test noodles-cram/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 111) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::write_file_header (line 172) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer (line 35) ... ok [INFO] [stdout] test noodles-cram/src/io/writer.rs - io::writer::Writer::write_record (line 221) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 73 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_csi [INFO] [stdout] [INFO] [stdout] running 78 tests [INFO] [stdout] test noodles-csi/src/async/fs.rs - r#async::fs::read (line 17) - compile ... ok [INFO] [stdout] test noodles-csi/src/async/fs.rs - r#async::fs::write (line 40) - compile ... ok [INFO] [stdout] test noodles-csi/src/async/io/reader.rs - r#async::io::reader::Reader::read_index (line 84) - compile ... ok [INFO] [stdout] test noodles-csi/src/async/io/reader.rs - r#async::io::reader::Reader::get_ref (line 40) ... ok [INFO] [stdout] test noodles-csi/src/async/io/reader.rs - r#async::io::reader::Reader::get_mut (line 54) ... ok [INFO] [stdout] test noodles-csi/src/async/io/reader.rs - r#async::io::reader::Reader::into_inner (line 68) ... ok [INFO] [stdout] test noodles-csi/src/async/io/writer.rs - r#async::io::writer::Writer::into_inner (line 47) ... ok [INFO] [stdout] test noodles-csi/src/async/io/reader.rs - r#async::io::reader::Reader::new (line 25) ... ok [INFO] [stdout] test noodles-csi/src/async/io/writer.rs - r#async::io::writer::Writer::get_ref (line 19) ... ok [INFO] [stdout] test noodles-csi/src/async/io/writer.rs - r#async::io::writer::Writer::get_mut (line 33) ... ok [INFO] [stdout] test noodles-csi/src/async/io/writer.rs - r#async::io::writer::Writer::new (line 66) ... ok [INFO] [stdout] test noodles-csi/src/binning_index.rs - binning_index::merge_chunks (line 81) ... ok [INFO] [stdout] test noodles-csi/src/binning_index.rs - binning_index::optimize_chunks (line 113) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/builder.rs - binning_index::index::builder::Builder::set_depth (line 36) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index.rs - binning_index::index::Index::reference_sequences (line 46) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index.rs - binning_index::index::Index::builder (line 34) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/builder.rs - binning_index::index::builder::Builder::set_reference_sequences (line 65) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/builder.rs - binning_index::index::builder::Builder::build (line 104) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/builder.rs - binning_index::index::builder::Builder::set_header (line 50) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::end_position_index (line 89) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::builder (line 31) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/builder.rs - binning_index::index::builder::Builder::set_unplaced_unmapped_record_count (line 87) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::line_comment_prefix (line 102) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::format (line 43) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::reference_sequence_names_mut (line 147) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::reference_sequence_name_index (line 58) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::start_position_index (line 73) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/builder.rs - binning_index::index::builder::Builder::set_min_shift (line 22) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::line_skip_count (line 115) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::build (line 211) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::bed (line 21) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header.rs - binning_index::index::header::Header::reference_sequence_names (line 128) ... ok [INFO] [stdout] test noodles-csi/src/async/io/writer.rs - r#async::io::writer::Writer::shutdown (line 80) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::gff (line 41) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::sam (line 61) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_end_position_index (line 146) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_format (line 101) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_line_skip_count (line 174) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_line_comment_prefix (line 160) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_start_position_index (line 132) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/format.rs - binning_index::index::header::format::Format::coordinate_system (line 28) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::vcf (line 81) ... ok [INFO] [stdout] test noodles-csi/src/async/io/writer.rs - r#async::io::writer::Writer::write_index (line 99) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence.rs - binning_index::index::reference_sequence::ReferenceSequence::bins (line 55) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence.rs - binning_index::index::reference_sequence::ReferenceSequence::min_offset (line 115) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_reference_sequence_names (line 188) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence.rs - binning_index::index::reference_sequence::ReferenceSequence::first_record_in_last_linear_bin_start_position (line 156) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/header/builder.rs - binning_index::index::header::builder::Builder::set_reference_sequence_name_index (line 115) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin.rs - binning_index::index::reference_sequence::bin::Bin::chunks (line 56) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence.rs - binning_index::index::reference_sequence::ReferenceSequence::new (line 36) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin.rs - binning_index::index::reference_sequence::bin::Bin::max_id (line 20) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin/chunk.rs - binning_index::index::reference_sequence::bin::chunk::Chunk::end (line 46) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence.rs - binning_index::index::reference_sequence::ReferenceSequence::query (line 77) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin.rs - binning_index::index::reference_sequence::bin::Bin::metadata_id (line 32) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin/chunk.rs - binning_index::index::reference_sequence::bin::chunk::Chunk::new (line 19) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/metadata.rs - binning_index::index::reference_sequence::metadata::Metadata::end_position (line 69) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin.rs - binning_index::index::reference_sequence::bin::Bin::new (line 44) ... ok [INFO] [stdout] test noodles-csi/src/fs.rs - fs::read (line 17) - compile ... ok [INFO] [stdout] test noodles-csi/src/fs.rs - fs::write (line 37) - compile ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/bin/chunk.rs - binning_index::index::reference_sequence::bin::chunk::Chunk::start (line 32) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/metadata.rs - binning_index::index::reference_sequence::metadata::Metadata::mapped_record_count (line 90) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/metadata.rs - binning_index::index::reference_sequence::metadata::Metadata::new (line 19) ... ok [INFO] [stdout] test noodles-csi/src/io/reader.rs - io::reader::Reader::new (line 69) - compile ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/metadata.rs - binning_index::index::reference_sequence::metadata::Metadata::start_position (line 48) ... ok [INFO] [stdout] test noodles-csi/src/io/reader.rs - io::reader::Reader::read_index (line 87) - compile ... ok [INFO] [stdout] test noodles-csi/src/binning_index/indexer.rs - binning_index::indexer::Indexer::new (line 29) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/index/reference_sequence/metadata.rs - binning_index::index::reference_sequence::metadata::Metadata::unmapped_record_count (line 111) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/indexer.rs - binning_index::indexer::Indexer::add_record (line 65) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/indexer.rs - binning_index::indexer::Indexer::set_header (line 47) ... ok [INFO] [stdout] test noodles-csi/src/io/reader.rs - io::reader::Reader::get_mut (line 36) ... ok [INFO] [stdout] test noodles-csi/src/binning_index/indexer.rs - binning_index::indexer::Indexer::build (line 127) ... ok [INFO] [stdout] test noodles-csi/src/io/reader.rs - io::reader::Reader::into_inner (line 50) ... ok [INFO] [stdout] test noodles-csi/src/io/writer.rs - io::writer::Writer::new (line 26) ... ok [INFO] [stdout] test noodles-csi/src/io/reader.rs - io::reader::Reader::get_ref (line 22) ... ok [INFO] [stdout] test noodles-csi/src/io/writer.rs - io::writer::Writer::into_inner (line 68) ... ok [INFO] [stdout] test noodles-csi/src/io/writer.rs - io::writer::Writer::get_ref (line 40) ... ok [INFO] [stdout] test noodles-csi/src/io/writer.rs - io::writer::Writer::get_mut (line 54) ... ok [INFO] [stdout] test noodles-csi/src/io/writer.rs - io::writer::Writer::write_index (line 82) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 78 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_fasta [INFO] [stdout] [INFO] [stdout] running 58 tests [INFO] [stdout] test noodles-fasta/src/fai/fs.rs - fai::fs::read (line 21) - compile ... ok [INFO] [stdout] test noodles-fasta/src/fai/fs.rs - fai::fs::write (line 41) - compile ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/reader.rs - fai::io::reader::Reader::get_mut (line 29) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/reader.rs - fai::io::reader::Reader::new (line 62) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/reader.rs - fai::io::reader::Reader::into_inner (line 43) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/reader.rs - fai::io::reader::Reader::get_ref (line 15) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/reader.rs - fai::io::reader::Reader::read_index (line 77) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/writer.rs - fai::io::writer::Writer::into_inner (line 43) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/writer.rs - fai::io::writer::Writer::get_ref (line 15) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/writer.rs - fai::io::writer::Writer::write_index (line 74) ... ok [INFO] [stdout] test noodles-fasta/src/fs/index.rs - fs::index::index (line 9) - compile ... ok [INFO] [stdout] test noodles-fasta/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 38) - compile ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/writer.rs - fai::io::writer::Writer::new (line 62) ... ok [INFO] [stdout] test noodles-fasta/src/fai/io/writer.rs - fai::io::writer::Writer::get_mut (line 29) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::line_width (line 101) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::new (line 28) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::name (line 49) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::line_bases (line 88) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::offset (line 75) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::length (line 62) ... ok [INFO] [stdout] test noodles-fasta/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 24) ... ok [INFO] [stdout] test noodles-fasta/src/io/indexer.rs - io::indexer::Indexer::new (line 31) ... ok [INFO] [stdout] test noodles-fasta/src/fai/record.rs - fai::record::Record::query (line 114) ... ok [INFO] [stdout] test noodles-fasta/src/io/indexer.rs - io::indexer::Indexer::index_record (line 65) ... ok [INFO] [stdout] test noodles-fasta/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 73) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::get_mut (line 43) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::get_ref (line 29) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 36) - compile ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::into_inner (line 57) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::new (line 76) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::query (line 215) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::read_definition (line 98) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer.rs - io::writer::Writer::get_mut (line 37) ... ok [INFO] [stdout] test noodles-fasta/src/lib.rs - (line 33) - compile ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::read_sequence (line 128) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::records (line 180) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer.rs - io::writer::Writer::get_ref (line 23) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer.rs - io::writer::Writer::into_inner (line 51) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer.rs - io::writer::Writer::write_record (line 85) ... ok [INFO] [stdout] test noodles-fasta/src/io/reader.rs - io::reader::Reader::sequence_reader (line 156) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 52) ... ok [INFO] [stdout] test noodles-fasta/src/record.rs - record::Record::definition (line 39) ... ok [INFO] [stdout] test noodles-fasta/src/record.rs - record::Record::new (line 22) ... ok [INFO] [stdout] test noodles-fasta/src/record/definition.rs - record::definition::Definition::name (line 45) ... ok [INFO] [stdout] test noodles-fasta/src/record/definition.rs - record::definition::Definition::new (line 27) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer.rs - io::writer::Writer::new (line 70) ... ok [INFO] [stdout] test noodles-fasta/src/record.rs - record::Record::name (line 56) ... ok [INFO] [stdout] test noodles-fasta/src/record.rs - record::Record::description (line 73) ... ok [INFO] [stdout] test noodles-fasta/src/record/definition.rs - record::definition::Definition::description (line 58) ... ok [INFO] [stdout] test noodles-fasta/src/record.rs - record::Record::sequence (line 91) ... ok [INFO] [stdout] test noodles-fasta/src/io/writer/builder.rs - io::writer::builder::Builder::set_line_base_count (line 23) ... ok [INFO] [stdout] test noodles-fasta/src/record/sequence.rs - record::sequence::Sequence::is_empty (line 34) ... ok [INFO] [stdout] test noodles-fasta/src/record/sequence.rs - record::sequence::Sequence::complement (line 128) ... ok [INFO] [stdout] test noodles-fasta/src/record/sequence.rs - record::sequence::Sequence::complement (line 117) ... ok [INFO] [stdout] test noodles-fasta/src/record/sequence.rs - record::sequence::Sequence::slice (line 75) ... ok [INFO] [stdout] test noodles-fasta/src/record/sequence.rs - record::sequence::Sequence::get (line 47) ... ok [INFO] [stdout] test noodles-fasta/src/record/sequence.rs - record::sequence::Sequence::len (line 21) ... ok [INFO] [stdout] test noodles-fasta/src/repository/adapters/indexed_reader.rs - repository::adapters::indexed_reader::IndexedReader::new (line 20) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 58 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_fastq [INFO] [stdout] [INFO] [stdout] running 44 tests [INFO] [stdout] test noodles-fastq/src/fai/io/reader.rs - fai::io::reader::Reader::get_ref (line 14) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/reader.rs - fai::io::reader::Reader::read_record (line 83) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/reader.rs - fai::io::reader::Reader::get_mut (line 28) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/reader.rs - fai::io::reader::Reader::new (line 61) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/writer.rs - fai::io::writer::Writer::get_ref (line 15) ... ok [INFO] [stdout] test noodles-fastq/src/fs/index.rs - fs::index::index (line 9) - compile ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/reader.rs - fai::io::reader::Reader::into_inner (line 42) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/writer.rs - fai::io::writer::Writer::get_mut (line 29) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/writer.rs - fai::io::writer::Writer::into_inner (line 43) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/writer.rs - fai::io::writer::Writer::new (line 62) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::length (line 64) ... ok [INFO] [stdout] test noodles-fastq/src/fai/io/writer.rs - fai::io::writer::Writer::write_record (line 74) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::line_bases (line 90) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::line_width (line 103) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::new (line 22) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::name (line 51) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::quality_scores_offset (line 116) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 34) - compile ... ok [INFO] [stdout] test noodles-fastq/src/io/reader.rs - io::reader::Reader::read_record (line 91) ... ok [INFO] [stdout] test noodles-fastq/src/io/indexer.rs - io::indexer::Indexer::index_record (line 41) ... ok [INFO] [stdout] test noodles-fastq/src/io/reader.rs - io::reader::Reader::into_inner (line 51) ... ok [INFO] [stdout] test noodles-fastq/src/io/reader.rs - io::reader::Reader::get_ref (line 23) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 51) - compile ... ok [INFO] [stdout] test noodles-fastq/src/io/reader.rs - io::reader::Reader::records (line 116) ... ok [INFO] [stdout] test noodles-fastq/src/io/reader.rs - io::reader::Reader::new (line 70) ... ok [INFO] [stdout] test noodles-fastq/src/fai/record.rs - fai::record::Record::sequence_offset (line 77) ... ok [INFO] [stdout] test noodles-fastq/src/lib.rs - (line 25) - compile ... ok [INFO] [stdout] test noodles-fastq/src/io/indexer.rs - io::indexer::Indexer::new (line 24) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer.rs - io::writer::Writer::new (line 72) ... ok [INFO] [stdout] test noodles-fastq/src/io/reader.rs - io::reader::Reader::get_mut (line 37) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer.rs - io::writer::Writer::get_mut (line 39) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer.rs - io::writer::Writer::into_inner (line 53) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer.rs - io::writer::Writer::get_ref (line 25) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer.rs - io::writer::Writer::write_record (line 87) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::description (line 82) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::sequence (line 110) ... ok [INFO] [stdout] test noodles-fastq/src/io/writer/builder.rs - io::writer::builder::Builder::set_definition_separator (line 21) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::quality_scores_mut (line 156) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::name (line 54) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::description_mut (line 95) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::new (line 24) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::name_mut (line 67) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::quality_scores (line 140) ... ok [INFO] [stdout] test noodles-fastq/src/record.rs - record::Record::sequence_mut (line 123) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 44 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_gff [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test noodles-gff/src/directive_buf/value/genome_build.rs - directive_buf::value::genome_build::GenomeBuild::name (line 51) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/genome_build.rs - directive_buf::value::genome_build::GenomeBuild::source (line 38) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/gff_version.rs - directive_buf::value::gff_version::GffVersion::major (line 23) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/genome_build.rs - directive_buf::value::genome_build::GenomeBuild::new (line 19) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/sequence_region.rs - directive_buf::value::sequence_region::SequenceRegion::end (line 84) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/gff_version.rs - directive_buf::value::gff_version::GffVersion::patch (line 51) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/sequence_region.rs - directive_buf::value::sequence_region::SequenceRegion::new (line 21) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::attributes (line 161) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::end (line 108) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::builder (line 34) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::phase (line 148) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/sequence_region.rs - directive_buf::value::sequence_region::SequenceRegion::reference_sequence_name (line 44) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/gff_version.rs - directive_buf::value::gff_version::GffVersion::minor (line 37) ... ok [INFO] [stdout] test noodles-gff/src/directive_buf/value/sequence_region.rs - directive_buf::value::sequence_region::SequenceRegion::start (line 64) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::source (line 64) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::reference_sequence_name (line 51) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::score (line 122) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::strand (line 135) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::start (line 92) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/attributes/field/value.rs - feature::record_buf::attributes::field::value::Value::as_array (line 42) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/attributes/field/value.rs - feature::record_buf::attributes::field::value::Value::as_string (line 21) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf.rs - feature::record_buf::RecordBuf::ty (line 77) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/attributes/field/value.rs - feature::record_buf::attributes::field::value::Value::iter (line 64) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::build (line 210) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_end (line 120) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_attributes (line 182) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::new (line 29) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_type (line 83) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_reference_sequence_name (line 41) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::get_mut (line 41) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_phase (line 168) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_strand (line 150) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader>::query (line 197) - compile ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_score (line 136) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_source (line 62) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::get_ref (line 27) ... ok [INFO] [stdout] test noodles-gff/src/feature/record_buf/builder.rs - feature::record_buf::builder::Builder::set_start (line 104) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::into_inner (line 55) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::line_bufs (line 92) ... ok [INFO] [stdout] test noodles-gff/src/lib.rs - (line 11) - compile ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::read_line (line 118) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::get_ref (line 19) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::record_bufs (line 171) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::lines (line 143) ... ok [INFO] [stdout] test noodles-gff/src/io/reader.rs - io::reader::Reader::new (line 74) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::write_feature_record (line 166) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::new (line 66) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::get_mut (line 33) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::write_directive (line 112) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::write_record (line 136) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::into_inner (line 47) ... ok [INFO] [stdout] test noodles-gff/src/io/writer.rs - io::writer::Writer::write_line (line 78) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_gtf [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::get_mut (line 39) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::get_ref (line 25) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::lines (line 111) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::line_bufs (line 142) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::into_inner (line 53) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::new (line 72) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::read_line (line 85) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::get_ref (line 21) ... ok [INFO] [stdout] test noodles-gtf/src/io/reader.rs - io::reader::Reader::record_bufs (line 180) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::get_mut (line 35) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::into_inner (line 49) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::new (line 68) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::write_feature_record (line 134) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::write_line (line 80) ... ok [INFO] [stdout] test noodles-gtf/src/io/writer.rs - io::writer::Writer::write_record (line 112) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_htsget [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test noodles-htsget/src/client.rs - client::Client::reads (line 57) ... ok [INFO] [stdout] test noodles-htsget/src/client.rs - client::Client::variants (line 75) ... ok [INFO] [stdout] test noodles-htsget/src/client.rs - client::Client::with_http_client (line 31) ... ok [INFO] [stdout] test noodles-htsget/src/client.rs - client::Client::new (line 17) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_refget [INFO] [stdout] [INFO] [stdout] running 4 tests [INFO] [stdout] test noodles-refget/src/client.rs - client::Client::sequence (line 59) ... ok [INFO] [stdout] test noodles-refget/src/client.rs - client::Client::with_http_client (line 33) ... ok [INFO] [stdout] test noodles-refget/src/client.rs - client::Client::new (line 17) ... ok [INFO] [stdout] test noodles-refget/src/client.rs - client::Client::sequence_metadata (line 76) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_sam [INFO] [stdout] [INFO] [stdout] running 200 tests [INFO] [stdout] test noodles-sam/src/alignment/record/cigar/op.rs - alignment::record::cigar::op::Op::is_empty (line 63) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/cigar/op.rs - alignment::record::cigar::op::Op::len (line 48) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/cigar/op.rs - alignment::record::cigar::op::Op::kind (line 35) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/cigar/op/kind.rs - alignment::record::cigar::op::kind::Kind::consumes_read (line 31) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/cigar/op/kind.rs - alignment::record::cigar::op::kind::Kind::consumes_reference (line 52) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/data/field/value.rs - alignment::record::data::field::value::Value<'_>::as_int (line 71) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_duplicate (line 167) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/data/field/value.rs - alignment::record::data::field::value::Value<'_>::ty (line 44) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/data/field/tag.rs - alignment::record::data::field::tag::Tag::new (line 208) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_last_segment (line 128) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_first_segment (line 115) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/cigar/op.rs - alignment::record::cigar::op::Op::new (line 19) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_mate_reverse_complemented (line 102) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_reverse_complemented (line 89) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_qc_fail (line 154) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_mate_unmapped (line 76) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_segmented (line 37) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_supplementary (line 180) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_properly_segmented (line 50) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_unmapped (line 63) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::alignment_end (line 484) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::alignment_span (line 468) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/flags.rs - alignment::record::flags::Flags::is_secondary (line 141) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/mapping_quality.rs - alignment::record::mapping_quality::MappingQuality::get (line 40) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::alignment_start (line 150) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::cigar (line 207) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record/mapping_quality.rs - alignment::record::mapping_quality::MappingQuality::new (line 27) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::builder (line 52) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::alignment_start_mut (line 165) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::cigar_mut (line 220) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::data (line 392) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::flags (line 94) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::flags_mut (line 107) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::data_mut (line 405) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mapping_quality (line 180) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mapping_quality_mut (line 193) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mate_reference_sequence (line 448) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mate_alignment_start (line 273) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mate_reference_sequence_id (line 244) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mate_reference_sequence_id_mut (line 257) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::mate_alignment_start_mut (line 288) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::name (line 64) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::quality_scores (line 361) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::reference_sequence_id (line 121) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::sequence (line 330) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::sequence_mut (line 343) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::quality_scores_mut (line 374) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::name_mut (line 77) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::template_length (line 303) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::template_length_mut (line 316) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_alignment_start (line 86) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::reference_sequence_id_mut (line 134) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf.rs - alignment::record_buf::RecordBuf::reference_sequence (line 431) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_flags (line 50) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::build (line 272) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_data (line 244) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_mate_alignment_start (line 167) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_mapping_quality (line 105) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_name (line 28) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_reference_sequence_id (line 68) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_sequence (line 204) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_mate_reference_sequence_id (line 149) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_quality_scores (line 224) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_cigar (line 123) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/cigar.rs - alignment::record_buf::cigar::Cigar::read_length (line 51) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/builder.rs - alignment::record_buf::builder::Builder::set_template_length (line 186) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::get_index_of (line 122) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/convert.rs - alignment::record_buf::convert::RecordBuf::try_from_alignment_record (line 11) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/cigar.rs - alignment::record_buf::cigar::Cigar::alignment_span (line 20) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::get_mut (line 93) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::remove (line 243) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::iter (line 145) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::insert (line 213) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::len (line 19) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::clear (line 47) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::get (line 67) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::values (line 187) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data/field/value.rs - alignment::record_buf::data::field::value::Value::as_int (line 69) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data/field/value.rs - alignment::record_buf::data::field::value::Value::is_int (line 90) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::is_empty (line 32) ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data/field/value.rs - alignment::record_buf::data::field::value::Value::ty (line 42) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::get_mut (line 40) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader>::query_unmapped (line 383) - compile ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data.rs - alignment::record_buf::data::Data::keys (line 166) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::get_ref (line 26) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader>::query (line 329) - compile ... ok [INFO] [stdout] test noodles-sam/src/alignment/record_buf/data/field/value/array.rs - alignment::record_buf::data::field::value::array::Array::subtype (line 31) ... ok [INFO] [stdout] test noodles-sam/src/fs/index.rs - fs::index::index (line 26) - compile ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::into_inner (line 54) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::new (line 24) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::get_ref (line 36) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::into_inner (line 62) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::header_reader (line 98) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::get_mut (line 49) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::new (line 73) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::record_bufs (line 198) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::read_header (line 130) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::records (line 276) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::builder (line 119) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::read_record (line 247) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::add_comment (line 351) ... ok [INFO] [stdout] test noodles-sam/src/async/io/reader.rs - r#async::io::reader::Reader::read_record_buf (line 163) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header (line 24) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::clear (line 390) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header (line 45) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::comments_mut (line 336) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::comments (line 319) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::header (line 131) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::write_header (line 78) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::from_str (line 415) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::programs (line 278) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::read_groups_mut (line 254) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::is_empty (line 369) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::write_record (line 102) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::read_groups (line 232) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::reference_sequences_mut (line 204) ... ok [INFO] [stdout] test noodles-sam/src/async/io/writer.rs - r#async::io::writer::Writer::write_alignment_record (line 127) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::header_mut (line 154) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::programs_mut (line 296) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::add_comment (line 165) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::add_program (line 142) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::add_reference_sequence (line 78) ... ok [INFO] [stdout] test noodles-sam/src/header.rs - header::Header::reference_sequences (line 174) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::set_reference_sequences (line 44) ... ok [INFO] [stdout] test noodles-sam/src/header/parser.rs - header::parser::Parser::finish (line 135) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::build (line 184) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::add_read_group (line 116) ... ok [INFO] [stdout] test noodles-sam/src/header/builder.rs - header::builder::Builder::set_header (line 26) ... ok [INFO] [stdout] test noodles-sam/src/header/parser.rs - header::parser::Parser::parse_partial (line 84) ... ok [INFO] [stdout] test noodles-sam/src/header/parser.rs - header::parser::parse (line 191) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map.rs - header::record::value::map::Map::other_fields_mut (line 57) ... ok [INFO] [stdout] test noodles-sam/src/header/programs.rs - header::programs::Programs::leaves (line 153) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/builder.rs - header::record::value::map::builder::Builder::build (line 81) ... ok [INFO] [stdout] test noodles-sam/src/header/programs.rs - header::programs::Programs::add (line 51) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header.rs - header::record::value::map::header::Map
::new (line 32) ... ok [INFO] [stdout] test noodles-sam/src/header/programs.rs - header::programs::Programs::roots (line 117) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/builder.rs - header::record::value::map::builder::Builder::insert (line 55) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header.rs - header::record::value::map::header::Map
::version_mut (line 68) ... ok [INFO] [stdout] test noodles-sam/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 42) - compile ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/reference_sequence.rs - header::record::value::map::reference_sequence::Map::length (line 54) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header/version.rs - header::record::value::map::header::version::Version::minor (line 47) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader (line 35) - compile ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header/builder.rs - header::record::value::map::header::builder::map::Builder
::set_version (line 15) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header/version.rs - header::record::value::map::header::version::Version::major (line 34) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header.rs - header::record::value::map::header::Map
::version (line 51) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::query (line 330) - compile ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/header/version.rs - header::record::value::map::header::version::Version::new (line 22) ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/reference_sequence.rs - header::record::value::map::reference_sequence::Map::new (line 37) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::query_unmapped (line 375) - compile ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/reference_sequence.rs - header::record::value::map::reference_sequence::Map::length_mut (line 69) ... ok [INFO] [stdout] test noodles-sam/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 39) - compile ... ok [INFO] [stdout] test noodles-sam/src/header/record/value/map/reference_sequence/builder.rs - header::record::value::map::reference_sequence::builder::map::Builder::set_length (line 19) ... ok [INFO] [stdout] test noodles-sam/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 67) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::into_inner (line 86) ... ok [INFO] [stdout] test noodles-sam/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 23) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::get_ref (line 58) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::new (line 105) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::get_mut (line 72) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::header_reader (line 127) ... ok [INFO] [stdout] test noodles-sam/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 66) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::read_record (line 256) ... ok [INFO] [stdout] test noodles-sam/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 38) - compile ... ok [INFO] [stdout] test noodles-sam/src/io/reader/builder.rs - io::reader::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::read_record_buf (line 193) ... ok [INFO] [stdout] test noodles-sam/src/lib.rs - (line 18) - compile ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::record_bufs (line 224) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::read_header (line 156) ... ok [INFO] [stdout] test noodles-sam/src/io/reader.rs - io::reader::Reader::records (line 282) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer::get_mut (line 85) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer::get_ref (line 72) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer (line 26) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer::new (line 60) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer::write_record (line 131) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer::into_inner (line 98) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::cigar (line 126) ... ok [INFO] [stdout] test noodles-sam/src/io/writer.rs - io::writer::Writer::write_header (line 114) ... ok [INFO] [stdout] test noodles-sam/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 66) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::mapping_quality (line 109) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::mate_alignment_start (line 168) ... ok [INFO] [stdout] test noodles-sam/src/io/writer/builder.rs - io::writer::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test noodles-sam/src/io/writer/record/cigar.rs - io::writer::record::cigar::write_cigar (line 15) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::flags (line 52) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::name (line 39) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::quality_scores (line 209) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::reference_sequence_id (line 66) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::data (line 222) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::mate_reference_sequence_id (line 139) ... ok [INFO] [stdout] test noodles-sam/src/record/cigar.rs - record::cigar::Cigar<'a>::iter (line 43) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::template_length (line 182) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::mate_reference_sequence_name (line 153) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::reference_sequence_name (line 80) ... ok [INFO] [stdout] test noodles-sam/src/record/cigar.rs - record::cigar::Cigar<'a>::new (line 14) ... ok [INFO] [stdout] test noodles-sam/src/record/data/field/value/base_modifications/group/unmodified_base.rs - record::data::field::value::base_modifications::group::unmodified_base::UnmodifiedBase::complement (line 25) ... ok [INFO] [stdout] test noodles-sam/src/record/data/field/value/base_modifications.rs - record::data::field::value::base_modifications::BaseModifications::parse (line 19) ... ok [INFO] [stdout] test noodles-sam/src/record/quality_scores.rs - record::quality_scores::QualityScores<'a>::len (line 41) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::sequence (line 196) ... ok [INFO] [stdout] test noodles-sam/src/record/quality_scores.rs - record::quality_scores::QualityScores<'a>::is_empty (line 24) ... ok [INFO] [stdout] test noodles-sam/src/record/quality_scores.rs - record::quality_scores::QualityScores<'a>::new (line 12) ... ok [INFO] [stdout] test noodles-sam/src/record/cigar.rs - record::cigar::Cigar<'a>::is_empty (line 26) ... ok [INFO] [stdout] test noodles-sam/src/record.rs - record::Record::alignment_start (line 95) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 200 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_tabix [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test noodles-tabix/src/fs.rs - fs::read (line 17) - compile ... ok [INFO] [stdout] test noodles-tabix/src/fs.rs - fs::write (line 37) - compile ... ok [INFO] [stdout] test noodles-tabix/src/io/reader.rs - io::reader::Reader::new (line 69) - compile ... ok [INFO] [stdout] test noodles-tabix/src/io/reader.rs - io::reader::Reader::read_index (line 87) - compile ... ok [INFO] [stdout] test noodles-tabix/src/index/indexer.rs - index::indexer::Indexer::add_record (line 41) ... ok [INFO] [stdout] test noodles-tabix/src/index/indexer.rs - index::indexer::Indexer::set_header (line 28) ... ok [INFO] [stdout] test noodles-tabix/src/index/indexer.rs - index::indexer::Indexer::build (line 77) ... ok [INFO] [stdout] test noodles-tabix/src/lib.rs - (line 19) - compile ... ok [INFO] [stdout] test noodles-tabix/src/io/reader.rs - io::reader::Reader::get_mut (line 36) ... ok [INFO] [stdout] test noodles-tabix/src/io/reader.rs - io::reader::Reader::get_ref (line 22) ... ok [INFO] [stdout] test noodles-tabix/src/io/reader.rs - io::reader::Reader::into_inner (line 50) ... ok [INFO] [stdout] test noodles-tabix/src/io/writer.rs - io::writer::Writer::get_mut (line 54) ... ok [INFO] [stdout] test noodles-tabix/src/io/writer.rs - io::writer::Writer::get_ref (line 40) ... ok [INFO] [stdout] test noodles-tabix/src/io/writer.rs - io::writer::Writer::into_inner (line 68) ... ok [INFO] [stdout] test noodles-tabix/src/io/writer.rs - io::writer::Writer::try_finish (line 85) ... ok [INFO] [stdout] test noodles-tabix/src/io/writer.rs - io::writer::Writer::new (line 26) ... ok [INFO] [stdout] test noodles-tabix/src/io/writer.rs - io::writer::Writer::write_index (line 100) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_util [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests noodles_vcf [INFO] [stdout] [INFO] [stdout] running 133 tests [INFO] [stdout] test noodles-vcf/src/fs/index.rs - fs::index::index (line 13) - compile ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::contigs_mut (line 325) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::builder (line 63) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::contigs (line 304) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::alternative_alleles_mut (line 281) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::file_format (line 77) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::filters (line 165) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::file_format_mut (line 96) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::alternative_alleles (line 257) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::other_records (line 393) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::get (line 441) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::filters_mut (line 186) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::insert (line 470) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::formats (line 206) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::formats_mut (line 232) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::infos (line 114) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::add_alternative_allele (line 136) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::add_contig (line 170) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::add_filter (line 81) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::other_records_mut (line 416) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::infos_mut (line 140) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::sample_names (line 345) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::insert (line 247) ... ok [INFO] [stdout] test noodles-vcf/src/header.rs - header::Header::sample_names_mut (line 369) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::add_sample_name (line 220) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::build (line 285) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/alternative_allele.rs - header::record::value::map::alternative_allele::Map::new (line 36) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/key.rs - header::record::key::Key::other (line 91) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length_mut (line 64) ... ok [INFO] [stdout] test noodles-vcf/src/header/file_format.rs - header::file_format::FileFormat::major (line 30) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5 (line 81) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::add_format (line 106) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::add_info (line 51) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::length (line 51) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::set_sample_names (line 195) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map.rs - header::record::value::map::Map::other_fields_mut (line 99) ... ok [INFO] [stdout] test noodles-vcf/src/header/builder.rs - header::builder::Builder::set_file_format (line 33) ... ok [INFO] [stdout] test noodles-vcf/src/header/file_format.rs - header::file_format::FileFormat::new (line 18) ... ok [INFO] [stdout] test noodles-vcf/src/header/file_format.rs - header::file_format::FileFormat::minor (line 43) ... ok [INFO] [stdout] test noodles-vcf/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_path (line 44) - compile ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url_mut (line 124) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::new (line 68) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::md5_mut (line 94) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/format.rs - header::record::value::map::format::Map::new (line 73) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::new (line 39) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/info.rs - header::record::value::map::info::Map::new (line 73) ... ok [INFO] [stdout] test noodles-vcf/src/header/string_maps/string_map.rs - header::string_maps::string_map::StringMap::get_index (line 19) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/contig.rs - header::record::value::map::contig::Map::url (line 111) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader (line 37) - compile ... ok [INFO] [stdout] test noodles-vcf/src/header/string_maps.rs - header::string_maps::StringMaps::contigs (line 76) ... ok [INFO] [stdout] test noodles-vcf/src/header/string_maps.rs - header::string_maps::StringMaps::strings (line 38) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/filter.rs - header::record::value::map::filter::Map::pass (line 48) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::query (line 333) - compile ... ok [INFO] [stdout] test noodles-vcf/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::build_from_reader (line 69) ... ok [INFO] [stdout] test noodles-vcf/src/header/record/value/map/other.rs - header::record::value::map::other::Map::new (line 31) ... ok [INFO] [stdout] test noodles-vcf/src/header/string_maps/string_map.rs - header::string_maps::string_map::StringMap::get_index_of (line 32) ... ok [INFO] [stdout] test noodles-vcf/src/io/indexed_reader/builder.rs - io::indexed_reader::builder::Builder::set_index (line 25) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::get_ref (line 60) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_path (line 39) - compile ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::into_inner (line 88) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::new (line 107) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::get_mut (line 74) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::header_reader (line 137) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::read_record (line 272) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::read_header (line 168) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader/builder.rs - io::reader::builder::Builder::build_from_reader (line 65) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::record_bufs (line 239) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer::new (line 68) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer::into_inner (line 106) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer::get_ref (line 80) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_path (line 38) - compile ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::read_record_buf (line 200) ... ok [INFO] [stdout] test noodles-vcf/src/lib.rs - (line 7) - compile ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer (line 17) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer::write_header (line 119) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader/builder.rs - io::reader::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer::get_mut (line 93) ... ok [INFO] [stdout] test noodles-vcf/src/io/reader.rs - io::reader::Reader::records (line 297) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer/builder.rs - io::writer::builder::Builder::set_compression_method (line 23) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer.rs - io::writer::Writer::write_record (line 137) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::builder (line 40) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::alternate_bases_mut (line 220) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::filters_mut (line 292) ... ok [INFO] [stdout] test noodles-vcf/src/io/writer/builder.rs - io::writer::builder::Builder::build_from_writer (line 66) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::ids (line 128) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::ids_mut (line 147) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::alternate_bases (line 201) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::quality_score (line 240) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::format (line 377) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::filters (line 275) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::reference_bases (line 165) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::reference_bases_mut (line 182) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::quality_score_mut (line 257) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::info_mut (line 337) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::reference_sequence_name_mut (line 69) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::samples (line 409) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::info (line 307) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::variant_start (line 91) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::reference_sequence_name (line 52) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::build (line 228) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::variant_start_mut (line 112) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf.rs - variant::record_buf::RecordBuf::samples_mut (line 441) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_info (line 163) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_filters (line 145) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_variant_start (line 47) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_alternate_bases (line 107) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_reference_sequence_name (line 26) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/filters.rs - variant::record_buf::filters::Filters::pass (line 18) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_ids (line 66) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_reference_bases (line 86) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::get_index (line 96) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::get_mut (line 69) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::clear (line 23) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::get_index_mut (line 123) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::values (line 200) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_samples (line 194) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::clear (line 50) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/builder.rs - variant::record_buf::builder::Builder::set_quality_score (line 127) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::keys_mut (line 96) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::get (line 124) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::new (line 25) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::select (line 170) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::is_empty (line 37) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::get (line 45) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples/sample/value/genotype/allele.rs - variant::record_buf::samples::sample::value::genotype::allele::Allele::phasing (line 70) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples/sample/value/genotype/allele.rs - variant::record_buf::samples::sample::value::genotype::allele::Allele::phasing_mut (line 87) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::insert (line 153) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/info.rs - variant::record_buf::info::Info::keys (line 176) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples/sample/value/genotype/allele.rs - variant::record_buf::samples::sample::value::genotype::allele::Allele::position_mut (line 52) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples/sample/value/genotype/allele.rs - variant::record_buf::samples::sample::value::genotype::allele::Allele::position (line 35) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples.rs - variant::record_buf::samples::Samples::keys (line 75) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/filters.rs - variant::record_buf::filters::Filters::is_pass (line 31) ... ok [INFO] [stdout] test noodles-vcf/src/variant/record_buf/samples/sample/value/genotype/allele.rs - variant::record_buf::samples::sample::value::genotype::allele::Allele::new (line 19) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 133 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "19f7bf26cb5da4b4788b02d6bc94eb3c0522459b1be88922b1bc8b2f7755bd15", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "19f7bf26cb5da4b4788b02d6bc94eb3c0522459b1be88922b1bc8b2f7755bd15", kill_on_drop: false }` [INFO] [stdout] 19f7bf26cb5da4b4788b02d6bc94eb3c0522459b1be88922b1bc8b2f7755bd15