[INFO] cloning repository https://github.com/Luke-ebbis/rdfbio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Luke-ebbis/rdfbio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLuke-ebbis%2Frdfbio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLuke-ebbis%2Frdfbio'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 43c654a8eae227237ba7a078862d60f6b146e76f [INFO] testing Luke-ebbis/rdfbio against try#0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6 for pr-137122-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLuke-ebbis%2Frdfbio" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/Luke-ebbis/rdfbio [INFO] finished tweaking git repo https://github.com/Luke-ebbis/rdfbio [INFO] tweaked toml for git repo https://github.com/Luke-ebbis/rdfbio written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/Luke-ebbis/rdfbio on toolchain 0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/Luke-ebbis/rdfbio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ddf93e7c3143dac96764f2781742f0cd2363d147703dcabb38e7b60766186ceb [INFO] running `Command { std: "docker" "start" "-a" "ddf93e7c3143dac96764f2781742f0cd2363d147703dcabb38e7b60766186ceb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ddf93e7c3143dac96764f2781742f0cd2363d147703dcabb38e7b60766186ceb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ddf93e7c3143dac96764f2781742f0cd2363d147703dcabb38e7b60766186ceb", kill_on_drop: false }` [INFO] [stdout] ddf93e7c3143dac96764f2781742f0cd2363d147703dcabb38e7b60766186ceb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 621964745ec54c822df382014ae361c630dc2c02b5877266d754369d51a60afd [INFO] running `Command { std: "docker" "start" "-a" "621964745ec54c822df382014ae361c630dc2c02b5877266d754369d51a60afd", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.94 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling autocfg v1.4.0 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[INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling uuid v1.16.0 [INFO] [stderr] Compiling quick-xml v0.37.2 [INFO] [stderr] Compiling serde_with v3.12.0 [INFO] [stderr] Compiling iref-core v3.2.2 [INFO] [stderr] Compiling langtag v0.4.0 [INFO] [stderr] Compiling iref v3.2.2 [INFO] [stderr] Compiling clap v4.5.32 [INFO] [stderr] Compiling derive_more v2.0.1 [INFO] [stderr] Compiling static-iref v3.0.0 [INFO] [stderr] Compiling rdf-types v0.22.5 [INFO] [stderr] Compiling linked-data-next-derive v0.1.5 [INFO] [stderr] Compiling xsd-types v0.9.6 [INFO] [stderr] Compiling linked-data-next v0.1.5 [INFO] [stderr] Compiling rdf-bio v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/biordf/core.rs:28:9 [INFO] [stdout] | [INFO] [stdout] 28 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Iri` [INFO] [stdout] --> src/biordf/core.rs:167:16 [INFO] [stdout] | [INFO] [stdout] 167 | use iref::{Iri, IriBuf}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `uuid` [INFO] [stdout] --> src/biordf/core.rs:171:16 [INFO] [stdout] | [INFO] [stdout] 171 | use uuid::{uuid, Uuid}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lint `elided_named_lifetimes` has been renamed to `mismatched_lifetime_syntaxes` [INFO] [stdout] --> src/biordf/core.rs:305:13 [INFO] [stdout] | [INFO] [stdout] 305 | #[allow(elided_named_lifetimes)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: use the new name: `mismatched_lifetime_syntaxes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(renamed_and_removed_lints)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `iref::IriBuf` [INFO] [stdout] --> src/biordf/api/ols.rs:38:9 [INFO] [stdout] | [INFO] [stdout] 38 | use iref::IriBuf; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `linked_data_next::Serialize as ldSerialize` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | use linked_data_next::Serialize as ldSerialize; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_with::SerializeDisplay` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | use serde_with::SerializeDisplay; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `StringWithSeparator` and `formats::ColonSeparator` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:297:22 [INFO] [stdout] | [INFO] [stdout] 297 | use serde_with::{formats::ColonSeparator, serde_as, StringWithSeparator}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LinkedDataSubject` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:300:48 [INFO] [stdout] | [INFO] [stdout] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Interpretation`, `Term`, and `Vocabulary` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:301:21 [INFO] [stdout] | [INFO] [stdout] 301 | use rdf_types::{Interpretation, Vocabulary, Term}; [INFO] [stdout] | ^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::ops::Deref` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:302:9 [INFO] [stdout] | [INFO] [stdout] 302 | use std::ops::Deref; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `api::ols::api::SearchBuilder` [INFO] [stdout] --> src/biordf/lang/parser.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | api::ols::api::SearchBuilder, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `reqwest::blocking::get` [INFO] [stdout] --> src/biordf/lang/parser.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use reqwest::blocking::get; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json` [INFO] [stdout] --> src/biordf/lang/parser.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `process::Output` [INFO] [stdout] --> src/biordf/io/formats.rs:8:32 [INFO] [stdout] | [INFO] [stdout] 8 | use std::{fs::OpenOptions, process::Output}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:287:9 [INFO] [stdout] | [INFO] [stdout] 287 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LinkedDataResource` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:300:28 [INFO] [stdout] | [INFO] [stdout] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:65:39 [INFO] [stdout] | [INFO] [stdout] 65 | Databases::BioProject(id) => "bioproject", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:66:34 [INFO] [stdout] | [INFO] [stdout] 66 | Databases::Pride(id) => "pride.project", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `db_string` [INFO] [stdout] --> src/biordf/core.rs:71:17 [INFO] [stdout] | [INFO] [stdout] 71 | let db_string = self.namespace(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_db_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:228:56 [INFO] [stdout] | [INFO] [stdout] 228 | ... rdf_types::Id::Iri(id) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:246:65 [INFO] [stdout] | [INFO] [stdout] 246 | ... rdf_types::Term::Id(id) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `step` [INFO] [stdout] --> src/biordf/core.rs:324:21 [INFO] [stdout] | [INFO] [stdout] 324 | let step = target; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_step` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `end` [INFO] [stdout] --> src/biordf/core.rs:467:34 [INFO] [stdout] | [INFO] [stdout] 467 | fn set(self, start: i32, end: i32, step: i32) -> Self { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `result` [INFO] [stdout] --> src/biordf/lang/parser.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | let result = builder.build().unwrap().search(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/lang/parser.rs:100:59 [INFO] [stdout] | [INFO] [stdout] 100 | QueryExpr::SearchFunction(SearchFunction::TaxTree(id)) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `query` [INFO] [stdout] --> src/biordf/lang/parser.rs:112:23 [INFO] [stdout] | [INFO] [stdout] 112 | fn contains(self, query: &str) -> bool { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_query` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/biordf/io/formats.rs:18:21 [INFO] [stdout] | [INFO] [stdout] 18 | let mut file = OpenOptions::new() [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `double_encode` is never used [INFO] [stdout] --> src/biordf/core.rs:5:8 [INFO] [stdout] | [INFO] [stdout] 5 | fn double_encode(url: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `URL`, `new`, `get_id`, `namespace`, and `to_identifier` are never used [INFO] [stdout] --> src/biordf/core.rs:47:15 [INFO] [stdout] | [INFO] [stdout] 46 | impl Databases<'_> { [INFO] [stdout] | ------------------ associated items in this implementation [INFO] [stdout] 47 | const URL: &'static str = "http://identifiers.org/"; [INFO] [stdout] | ^^^ [INFO] [stdout] 48 | fn new<'a>(namespace: &'a str, id: &'a str) -> Databases<'a> { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 56 | fn get_id(self) -> String { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 63 | fn namespace(self) -> &'static str { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 70 | fn to_identifier(&self) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_identifier_resolving` is never used [INFO] [stdout] --> src/biordf/core.rs:102:8 [INFO] [stdout] | [INFO] [stdout] 102 | fn check_identifier_resolving(x: &str) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `null_check` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:332:8 [INFO] [stdout] | [INFO] [stdout] 332 | fn null_check<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `u64_to_string` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:344:8 [INFO] [stdout] | [INFO] [stdout] 344 | fn u64_to_string(value: &u64, serializer: S) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `string_to_u64` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:351:8 [INFO] [stdout] | [INFO] [stdout] 351 | fn string_to_u64<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `string_to_uri` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:362:8 [INFO] [stdout] | [INFO] [stdout] 362 | fn string_to_uri<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `uri_to_string` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 371 | fn uri_to_string(value: &IriBuf, serializer: S) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `QueryExpr` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:11:6 [INFO] [stdout] | [INFO] [stdout] 11 | enum QueryExpr { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `SearchFunction` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:20:6 [INFO] [stdout] | [INFO] [stdout] 20 | enum SearchFunction { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tokenize_lisp_query` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:24:4 [INFO] [stdout] | [INFO] [stdout] 24 | fn tokenize_lisp_query(query: &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `resolve_tax_tree` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:55:4 [INFO] [stdout] | [INFO] [stdout] 55 | fn resolve_tax_tree(id: u32) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `execute_query` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:65:4 [INFO] [stdout] | [INFO] [stdout] 65 | fn execute_query(expr: QueryExpr) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait `Searching` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:107:7 [INFO] [stdout] | [INFO] [stdout] 107 | trait Searching { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `fetch_omicsdi_results` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:117:4 [INFO] [stdout] | [INFO] [stdout] 117 | fn fetch_omicsdi_results(query: &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_lisp_query` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:140:4 [INFO] [stdout] | [INFO] [stdout] 140 | fn parse_lisp_query(tokens: &mut Vec) -> QueryExpr { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: call to `.clone()` on a reference in this situation does nothing [INFO] [stdout] --> src/biordf/lang/parser.rs:133:27 [INFO] [stdout] | [INFO] [stdout] 133 | let user_query = query.clone(); [INFO] [stdout] | ^^^^^^^^ help: remove this redundant call [INFO] [stdout] | [INFO] [stdout] = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed [INFO] [stdout] = note: `#[warn(noop_method_call)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `csv::WriterBuilder as CsvWriterBuilder` [INFO] [stdout] --> src/main.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use csv::WriterBuilder as CsvWriterBuilder; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::OpenOptions` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::fs::OpenOptions; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:99:17 [INFO] [stdout] | [INFO] [stdout] 99 | w.serialize(&results); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 99 | let _ = w.serialize(&results); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:103:17 [INFO] [stdout] | [INFO] [stdout] 103 | w.serialize(&results); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 103 | let _ = w.serialize(&results); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 13m 24s [INFO] running `Command { std: "docker" "inspect" "621964745ec54c822df382014ae361c630dc2c02b5877266d754369d51a60afd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "621964745ec54c822df382014ae361c630dc2c02b5877266d754369d51a60afd", kill_on_drop: false }` [INFO] [stdout] 621964745ec54c822df382014ae361c630dc2c02b5877266d754369d51a60afd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e8d704201bf4ffa885e519ff416b6b3b89905a76b2d89a81e612c20352d9efc6 [INFO] running `Command { std: "docker" "start" "-a" "e8d704201bf4ffa885e519ff416b6b3b89905a76b2d89a81e612c20352d9efc6", kill_on_drop: false }` [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/biordf/core.rs:28:9 [INFO] [stdout] | [INFO] [stdout] 28 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Iri` [INFO] [stdout] --> src/biordf/core.rs:167:16 [INFO] [stdout] | [INFO] [stdout] 167 | use iref::{Iri, IriBuf}; [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `uuid` [INFO] [stdout] --> src/biordf/core.rs:171:16 [INFO] [stdout] | [INFO] [stdout] 171 | use uuid::{uuid, Uuid}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lint `elided_named_lifetimes` has been renamed to `mismatched_lifetime_syntaxes` [INFO] [stdout] --> src/biordf/core.rs:305:13 [INFO] [stdout] | [INFO] [stdout] 305 | #[allow(elided_named_lifetimes)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: use the new name: `mismatched_lifetime_syntaxes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(renamed_and_removed_lints)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `iref::IriBuf` [INFO] [stdout] --> src/biordf/api/ols.rs:38:9 [INFO] [stdout] | [INFO] [stdout] 38 | use iref::IriBuf; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `linked_data_next::Serialize as ldSerialize` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | use linked_data_next::Serialize as ldSerialize; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_with::SerializeDisplay` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | use serde_with::SerializeDisplay; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `StringWithSeparator` and `formats::ColonSeparator` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:297:22 [INFO] [stdout] | [INFO] [stdout] 297 | use serde_with::{formats::ColonSeparator, serde_as, StringWithSeparator}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LinkedDataSubject` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:300:48 [INFO] [stdout] | [INFO] [stdout] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Interpretation`, `Term`, and `Vocabulary` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:301:21 [INFO] [stdout] | [INFO] [stdout] 301 | use rdf_types::{Interpretation, Vocabulary, Term}; [INFO] [stdout] | ^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::ops::Deref` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:302:9 [INFO] [stdout] | [INFO] [stdout] 302 | use std::ops::Deref; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `api::ols::api::SearchBuilder` [INFO] [stdout] --> src/biordf/lang/parser.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | api::ols::api::SearchBuilder, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `reqwest::blocking::get` [INFO] [stdout] --> src/biordf/lang/parser.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use reqwest::blocking::get; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json` [INFO] [stdout] --> src/biordf/lang/parser.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `process::Output` [INFO] [stdout] --> src/biordf/io/formats.rs:8:32 [INFO] [stdout] | [INFO] [stdout] 8 | use std::{fs::OpenOptions, process::Output}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:287:9 [INFO] [stdout] | [INFO] [stdout] 287 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LinkedDataResource` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:300:28 [INFO] [stdout] | [INFO] [stdout] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:65:39 [INFO] [stdout] | [INFO] [stdout] 65 | Databases::BioProject(id) => "bioproject", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:66:34 [INFO] [stdout] | [INFO] [stdout] 66 | Databases::Pride(id) => "pride.project", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `db_string` [INFO] [stdout] --> src/biordf/core.rs:71:17 [INFO] [stdout] | [INFO] [stdout] 71 | let db_string = self.namespace(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_db_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:228:56 [INFO] [stdout] | [INFO] [stdout] 228 | ... rdf_types::Id::Iri(id) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:246:65 [INFO] [stdout] | [INFO] [stdout] 246 | ... rdf_types::Term::Id(id) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `step` [INFO] [stdout] --> src/biordf/core.rs:324:21 [INFO] [stdout] | [INFO] [stdout] 324 | let step = target; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_step` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `end` [INFO] [stdout] --> src/biordf/core.rs:467:34 [INFO] [stdout] | [INFO] [stdout] 467 | fn set(self, start: i32, end: i32, step: i32) -> Self { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `result` [INFO] [stdout] --> src/biordf/lang/parser.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | let result = builder.build().unwrap().search(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/lang/parser.rs:100:59 [INFO] [stdout] | [INFO] [stdout] 100 | QueryExpr::SearchFunction(SearchFunction::TaxTree(id)) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `query` [INFO] [stdout] --> src/biordf/lang/parser.rs:112:23 [INFO] [stdout] | [INFO] [stdout] 112 | fn contains(self, query: &str) -> bool { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_query` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rdf-bio v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/biordf/io/formats.rs:18:21 [INFO] [stdout] | [INFO] [stdout] 18 | let mut file = OpenOptions::new() [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `double_encode` is never used [INFO] [stdout] --> src/biordf/core.rs:5:8 [INFO] [stdout] | [INFO] [stdout] 5 | fn double_encode(url: &str) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `URL`, `new`, `get_id`, `namespace`, and `to_identifier` are never used [INFO] [stdout] --> src/biordf/core.rs:47:15 [INFO] [stdout] | [INFO] [stdout] 46 | impl Databases<'_> { [INFO] [stdout] | ------------------ associated items in this implementation [INFO] [stdout] 47 | const URL: &'static str = "http://identifiers.org/"; [INFO] [stdout] | ^^^ [INFO] [stdout] 48 | fn new<'a>(namespace: &'a str, id: &'a str) -> Databases<'a> { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 56 | fn get_id(self) -> String { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 63 | fn namespace(self) -> &'static str { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 70 | fn to_identifier(&self) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `check_identifier_resolving` is never used [INFO] [stdout] --> src/biordf/core.rs:102:8 [INFO] [stdout] | [INFO] [stdout] 102 | fn check_identifier_resolving(x: &str) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `null_check` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:332:8 [INFO] [stdout] | [INFO] [stdout] 332 | fn null_check<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `u64_to_string` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:344:8 [INFO] [stdout] | [INFO] [stdout] 344 | fn u64_to_string(value: &u64, serializer: S) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `string_to_u64` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:351:8 [INFO] [stdout] | [INFO] [stdout] 351 | fn string_to_u64<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `string_to_uri` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:362:8 [INFO] [stdout] | [INFO] [stdout] 362 | fn string_to_uri<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `uri_to_string` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 371 | fn uri_to_string(value: &IriBuf, serializer: S) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `QueryExpr` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:11:6 [INFO] [stdout] | [INFO] [stdout] 11 | enum QueryExpr { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: enum `SearchFunction` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:20:6 [INFO] [stdout] | [INFO] [stdout] 20 | enum SearchFunction { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `tokenize_lisp_query` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:24:4 [INFO] [stdout] | [INFO] [stdout] 24 | fn tokenize_lisp_query(query: &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `resolve_tax_tree` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:55:4 [INFO] [stdout] | [INFO] [stdout] 55 | fn resolve_tax_tree(id: u32) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `execute_query` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:65:4 [INFO] [stdout] | [INFO] [stdout] 65 | fn execute_query(expr: QueryExpr) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: trait `Searching` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:107:7 [INFO] [stdout] | [INFO] [stdout] 107 | trait Searching { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `fetch_omicsdi_results` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:117:4 [INFO] [stdout] | [INFO] [stdout] 117 | fn fetch_omicsdi_results(query: &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `parse_lisp_query` is never used [INFO] [stdout] --> src/biordf/lang/parser.rs:140:4 [INFO] [stdout] | [INFO] [stdout] 140 | fn parse_lisp_query(tokens: &mut Vec) -> QueryExpr { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: call to `.clone()` on a reference in this situation does nothing [INFO] [stdout] --> src/biordf/lang/parser.rs:133:27 [INFO] [stdout] | [INFO] [stdout] 133 | let user_query = query.clone(); [INFO] [stdout] | ^^^^^^^^ help: remove this redundant call [INFO] [stdout] | [INFO] [stdout] = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed [INFO] [stdout] = note: `#[warn(noop_method_call)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `csv::WriterBuilder as CsvWriterBuilder` [INFO] [stdout] --> src/main.rs:4:5 [INFO] [stdout] | [INFO] [stdout] 4 | use csv::WriterBuilder as CsvWriterBuilder; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::OpenOptions` [INFO] [stdout] --> src/main.rs:14:5 [INFO] [stdout] | [INFO] [stdout] 14 | use std::fs::OpenOptions; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:99:17 [INFO] [stdout] | [INFO] [stdout] 99 | w.serialize(&results); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 99 | let _ = w.serialize(&results); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:103:17 [INFO] [stdout] | [INFO] [stdout] 103 | w.serialize(&results); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] help: use `let _ = ...` to ignore the resulting value [INFO] [stdout] | [INFO] [stdout] 103 | let _ = w.serialize(&results); [INFO] [stdout] | +++++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Iri` [INFO] [stdout] --> src/biordf/core.rs:167:16 [INFO] [stdout] | [INFO] [stdout] 167 | use iref::{Iri, IriBuf}; [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `uuid` [INFO] [stdout] --> src/biordf/core.rs:171:16 [INFO] [stdout] | [INFO] [stdout] 171 | use uuid::{uuid, Uuid}; [INFO] [stdout] | ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: lint `elided_named_lifetimes` has been renamed to `mismatched_lifetime_syntaxes` [INFO] [stdout] --> src/biordf/core.rs:305:13 [INFO] [stdout] | [INFO] [stdout] 305 | #[allow(elided_named_lifetimes)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: use the new name: `mismatched_lifetime_syntaxes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(renamed_and_removed_lints)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Endpoint` and `PagerIterator` [INFO] [stdout] --> src/biordf/core.rs:512:42 [INFO] [stdout] | [INFO] [stdout] 512 | use crate::biordf::core::searching::{Endpoint, Pageable, Pager, PagerIterator, SearchSize}; [INFO] [stdout] | ^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `data::OmicsDiResponse` [INFO] [stdout] --> src/biordf/core.rs:514:59 [INFO] [stdout] | [INFO] [stdout] 514 | use crate::biordf::api::omicsdi::{api::SearchBuilder, data::OmicsDiResponse}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `dataset::DatasetView` [INFO] [stdout] --> src/biordf/core.rs:641:21 [INFO] [stdout] | [INFO] [stdout] 641 | use rdf_types::{dataset::DatasetView, static_iref::iri}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `iref::IriBuf` [INFO] [stdout] --> src/biordf/api/ols.rs:38:9 [INFO] [stdout] | [INFO] [stdout] 38 | use iref::IriBuf; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `linked_data_next::Serialize as ldSerialize` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | use linked_data_next::Serialize as ldSerialize; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_with::SerializeDisplay` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | use serde_with::SerializeDisplay; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `StringWithSeparator` and `formats::ColonSeparator` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:297:22 [INFO] [stdout] | [INFO] [stdout] 297 | use serde_with::{formats::ColonSeparator, serde_as, StringWithSeparator}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LinkedDataSubject` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:300:48 [INFO] [stdout] | [INFO] [stdout] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Interpretation`, `Term`, and `Vocabulary` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:301:21 [INFO] [stdout] | [INFO] [stdout] 301 | use rdf_types::{Interpretation, Vocabulary, Term}; [INFO] [stdout] | ^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::ops::Deref` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:302:9 [INFO] [stdout] | [INFO] [stdout] 302 | use std::ops::Deref; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `api::ols::api::SearchBuilder` [INFO] [stdout] --> src/biordf/lang/parser.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | api::ols::api::SearchBuilder, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `reqwest::blocking::get` [INFO] [stdout] --> src/biordf/lang/parser.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use reqwest::blocking::get; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `serde_json` [INFO] [stdout] --> src/biordf/lang/parser.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use serde_json; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `process::Output` [INFO] [stdout] --> src/biordf/io/formats.rs:8:32 [INFO] [stdout] | [INFO] [stdout] 8 | use std::{fs::OpenOptions, process::Output}; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `LinkedDataResource` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:300:28 [INFO] [stdout] | [INFO] [stdout] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/biordf/api/omicsdi.rs:287:9 [INFO] [stdout] | [INFO] [stdout] 287 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:65:39 [INFO] [stdout] | [INFO] [stdout] 65 | Databases::BioProject(id) => "bioproject", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:66:34 [INFO] [stdout] | [INFO] [stdout] 66 | Databases::Pride(id) => "pride.project", [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `db_string` [INFO] [stdout] --> src/biordf/core.rs:71:17 [INFO] [stdout] | [INFO] [stdout] 71 | let db_string = self.namespace(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_db_string` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:228:56 [INFO] [stdout] | [INFO] [stdout] 228 | ... rdf_types::Id::Iri(id) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/core.rs:246:65 [INFO] [stdout] | [INFO] [stdout] 246 | ... rdf_types::Term::Id(id) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `step` [INFO] [stdout] --> src/biordf/core.rs:324:21 [INFO] [stdout] | [INFO] [stdout] 324 | let step = target; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_step` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `end` [INFO] [stdout] --> src/biordf/core.rs:467:34 [INFO] [stdout] | [INFO] [stdout] 467 | fn set(self, start: i32, end: i32, step: i32) -> Self { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_end` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `out` [INFO] [stdout] --> src/biordf/core.rs:554:13 [INFO] [stdout] | [INFO] [stdout] 554 | let out = r.total_hits()?; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `results` [INFO] [stdout] --> src/biordf/core.rs:560:17 [INFO] [stdout] | [INFO] [stdout] 560 | let results = part.search()?; [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_results` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `parsed` [INFO] [stdout] --> src/biordf/api/ols.rs:461:13 [INFO] [stdout] | [INFO] [stdout] 461 | let parsed: ApiResponse = serde_json::from_str(json_data).expect("Failed to parse JSON"); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_parsed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/biordf/api/omicsdi.rs:596:13 [INFO] [stdout] | [INFO] [stdout] 596 | let mut x = binding.start(1).size(10).query("s"); [INFO] [stdout] | ----^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `result` [INFO] [stdout] --> src/biordf/lang/parser.rs:61:9 [INFO] [stdout] | [INFO] [stdout] 61 | let result = builder.build().unwrap().search(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `id` [INFO] [stdout] --> src/biordf/lang/parser.rs:100:59 [INFO] [stdout] | [INFO] [stdout] 100 | QueryExpr::SearchFunction(SearchFunction::TaxTree(id)) => { [INFO] [stdout] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `query` [INFO] [stdout] --> src/biordf/lang/parser.rs:112:23 [INFO] [stdout] | [INFO] [stdout] 112 | fn contains(self, query: &str) -> bool { [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_query` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/biordf/io/formats.rs:18:21 [INFO] [stdout] | [INFO] [stdout] 18 | let mut file = OpenOptions::new() [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `null_check` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:332:8 [INFO] [stdout] | [INFO] [stdout] 332 | fn null_check<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `u64_to_string` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:344:8 [INFO] [stdout] | [INFO] [stdout] 344 | fn u64_to_string(value: &u64, serializer: S) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `string_to_u64` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:351:8 [INFO] [stdout] | [INFO] [stdout] 351 | fn string_to_u64<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `string_to_uri` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:362:8 [INFO] [stdout] | [INFO] [stdout] 362 | fn string_to_uri<'de, D>(deserializer: D) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `uri_to_string` is never used [INFO] [stdout] --> src/biordf/api/ols.rs:371:8 [INFO] [stdout] | [INFO] [stdout] 371 | fn uri_to_string(value: &IriBuf, serializer: S) -> Result [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: call to `.clone()` on a reference in this situation does nothing [INFO] [stdout] --> src/biordf/lang/parser.rs:133:27 [INFO] [stdout] | [INFO] [stdout] 133 | let user_query = query.clone(); [INFO] [stdout] | ^^^^^^^^ help: remove this redundant call [INFO] [stdout] | [INFO] [stdout] = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed [INFO] [stdout] = note: `#[warn(noop_method_call)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 13.79s [INFO] running `Command { std: "docker" "inspect" "e8d704201bf4ffa885e519ff416b6b3b89905a76b2d89a81e612c20352d9efc6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e8d704201bf4ffa885e519ff416b6b3b89905a76b2d89a81e612c20352d9efc6", kill_on_drop: false }` [INFO] [stdout] e8d704201bf4ffa885e519ff416b6b3b89905a76b2d89a81e612c20352d9efc6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 08d3bbaaa3da079f495bdbaebce5f95387073e46c75ce08a9649788918e817cb [INFO] running `Command { std: "docker" "start" "-a" "08d3bbaaa3da079f495bdbaebce5f95387073e46c75ce08a9649788918e817cb", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `std::error::Error` [INFO] [stderr] --> src/biordf/core.rs:28:9 [INFO] [stderr] | [INFO] [stderr] 28 | use std::error::Error; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `Iri` [INFO] [stderr] --> src/biordf/core.rs:167:16 [INFO] [stderr] | [INFO] [stderr] 167 | use iref::{Iri, IriBuf}; [INFO] [stderr] | ^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `uuid` [INFO] [stderr] --> src/biordf/core.rs:171:16 [INFO] [stderr] | [INFO] [stderr] 171 | use uuid::{uuid, Uuid}; [INFO] [stderr] | ^^^^ [INFO] [stderr] [INFO] [stderr] warning: lint `elided_named_lifetimes` has been renamed to `mismatched_lifetime_syntaxes` [INFO] [stderr] --> src/biordf/core.rs:305:13 [INFO] [stderr] | [INFO] [stderr] 305 | #[allow(elided_named_lifetimes)] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: use the new name: `mismatched_lifetime_syntaxes` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(renamed_and_removed_lints)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `iref::IriBuf` [INFO] [stderr] --> src/biordf/api/ols.rs:38:9 [INFO] [stderr] | [INFO] [stderr] 38 | use iref::IriBuf; [INFO] [stderr] | ^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `linked_data_next::Serialize as ldSerialize` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:285:9 [INFO] [stderr] | [INFO] [stderr] 285 | use linked_data_next::Serialize as ldSerialize; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `serde_with::SerializeDisplay` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:286:9 [INFO] [stderr] | [INFO] [stderr] 286 | use serde_with::SerializeDisplay; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `StringWithSeparator` and `formats::ColonSeparator` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:297:22 [INFO] [stderr] | [INFO] [stderr] 297 | use serde_with::{formats::ColonSeparator, serde_as, StringWithSeparator}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `LinkedDataSubject` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:300:48 [INFO] [stderr] | [INFO] [stderr] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Interpretation`, `Term`, and `Vocabulary` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:301:21 [INFO] [stderr] | [INFO] [stderr] 301 | use rdf_types::{Interpretation, Vocabulary, Term}; [INFO] [stderr] | ^^^^^^^^^^^^^^ ^^^^^^^^^^ ^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::ops::Deref` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:302:9 [INFO] [stderr] | [INFO] [stderr] 302 | use std::ops::Deref; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `api::ols::api::SearchBuilder` [INFO] [stderr] --> src/biordf/lang/parser.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | api::ols::api::SearchBuilder, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `reqwest::blocking::get` [INFO] [stderr] --> src/biordf/lang/parser.rs:7:5 [INFO] [stderr] | [INFO] [stderr] 7 | use reqwest::blocking::get; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `serde_json` [INFO] [stderr] --> src/biordf/lang/parser.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | use serde_json; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `process::Output` [INFO] [stderr] --> src/biordf/io/formats.rs:8:32 [INFO] [stderr] | [INFO] [stderr] 8 | use std::{fs::OpenOptions, process::Output}; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::error::Error` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:287:9 [INFO] [stderr] | [INFO] [stderr] 287 | use std::error::Error; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `LinkedDataResource` [INFO] [stderr] --> src/biordf/api/omicsdi.rs:300:28 [INFO] [stderr] | [INFO] [stderr] 300 | use linked_data_next::{LinkedDataResource, LinkedDataSubject}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `id` [INFO] [stderr] --> src/biordf/core.rs:65:39 [INFO] [stderr] | [INFO] [stderr] 65 | Databases::BioProject(id) => "bioproject", [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `id` [INFO] [stderr] --> src/biordf/core.rs:66:34 [INFO] [stderr] | [INFO] [stderr] 66 | Databases::Pride(id) => "pride.project", [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `db_string` [INFO] [stderr] --> src/biordf/core.rs:71:17 [INFO] [stderr] | [INFO] [stderr] 71 | let db_string = self.namespace(); [INFO] [stderr] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_db_string` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `id` [INFO] [stderr] --> src/biordf/core.rs:228:56 [INFO] [stderr] | [INFO] [stderr] 228 | ... rdf_types::Id::Iri(id) => { [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `id` [INFO] [stderr] --> src/biordf/core.rs:246:65 [INFO] [stderr] | [INFO] [stderr] 246 | ... rdf_types::Term::Id(id) => { [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `step` [INFO] [stderr] --> src/biordf/core.rs:324:21 [INFO] [stderr] | [INFO] [stderr] 324 | let step = target; [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_step` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `end` [INFO] [stderr] --> src/biordf/core.rs:467:34 [INFO] [stderr] | [INFO] [stderr] 467 | fn set(self, start: i32, end: i32, step: i32) -> Self { [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_end` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `result` [INFO] [stderr] --> src/biordf/lang/parser.rs:61:9 [INFO] [stderr] | [INFO] [stderr] 61 | let result = builder.build().unwrap().search(); [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `id` [INFO] [stderr] --> src/biordf/lang/parser.rs:100:59 [INFO] [stderr] | [INFO] [stderr] 100 | QueryExpr::SearchFunction(SearchFunction::TaxTree(id)) => { [INFO] [stderr] | ^^ help: if this is intentional, prefix it with an underscore: `_id` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `query` [INFO] [stderr] --> src/biordf/lang/parser.rs:112:23 [INFO] [stderr] | [INFO] [stderr] 112 | fn contains(self, query: &str) -> bool { [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_query` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/biordf/io/formats.rs:18:21 [INFO] [stderr] | [INFO] [stderr] 18 | let mut file = OpenOptions::new() [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: function `double_encode` is never used [INFO] [stderr] --> src/biordf/core.rs:5:8 [INFO] [stderr] | [INFO] [stderr] 5 | fn double_encode(url: &str) -> String { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: associated items `URL`, `new`, `get_id`, `namespace`, and `to_identifier` are never used [INFO] [stderr] --> src/biordf/core.rs:47:15 [INFO] [stderr] | [INFO] [stderr] 46 | impl Databases<'_> { [INFO] [stderr] | ------------------ associated items in this implementation [INFO] [stderr] 47 | const URL: &'static str = "http://identifiers.org/"; [INFO] [stderr] | ^^^ [INFO] [stderr] 48 | fn new<'a>(namespace: &'a str, id: &'a str) -> Databases<'a> { [INFO] [stderr] | ^^^ [INFO] [stderr] ... [INFO] [stderr] 56 | fn get_id(self) -> String { [INFO] [stderr] | ^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 63 | fn namespace(self) -> &'static str { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 70 | fn to_identifier(&self) -> Result { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `check_identifier_resolving` is never used [INFO] [stderr] --> src/biordf/core.rs:102:8 [INFO] [stderr] | [INFO] [stderr] 102 | fn check_identifier_resolving(x: &str) -> Result { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `null_check` is never used [INFO] [stderr] --> src/biordf/api/ols.rs:332:8 [INFO] [stderr] | [INFO] [stderr] 332 | fn null_check<'de, D>(deserializer: D) -> Result [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `u64_to_string` is never used [INFO] [stderr] --> src/biordf/api/ols.rs:344:8 [INFO] [stderr] | [INFO] [stderr] 344 | fn u64_to_string(value: &u64, serializer: S) -> Result [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `string_to_u64` is never used [INFO] [stderr] --> src/biordf/api/ols.rs:351:8 [INFO] [stderr] | [INFO] [stderr] 351 | fn string_to_u64<'de, D>(deserializer: D) -> Result [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `string_to_uri` is never used [INFO] [stderr] --> src/biordf/api/ols.rs:362:8 [INFO] [stderr] | [INFO] [stderr] 362 | fn string_to_uri<'de, D>(deserializer: D) -> Result [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `uri_to_string` is never used [INFO] [stderr] --> src/biordf/api/ols.rs:371:8 [INFO] [stderr] | [INFO] [stderr] 371 | fn uri_to_string(value: &IriBuf, serializer: S) -> Result [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: enum `QueryExpr` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:11:6 [INFO] [stderr] | [INFO] [stderr] 11 | enum QueryExpr { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: enum `SearchFunction` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:20:6 [INFO] [stderr] | [INFO] [stderr] 20 | enum SearchFunction { [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `tokenize_lisp_query` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:24:4 [INFO] [stderr] | [INFO] [stderr] 24 | fn tokenize_lisp_query(query: &str) -> Vec { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `resolve_tax_tree` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:55:4 [INFO] [stderr] | [INFO] [stderr] 55 | fn resolve_tax_tree(id: u32) -> Vec { [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `execute_query` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:65:4 [INFO] [stderr] | [INFO] [stderr] 65 | fn execute_query(expr: QueryExpr) -> Vec { [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: trait `Searching` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:107:7 [INFO] [stderr] | [INFO] [stderr] 107 | trait Searching { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `fetch_omicsdi_results` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:117:4 [INFO] [stderr] | [INFO] [stderr] 117 | fn fetch_omicsdi_results(query: &str) -> Vec { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function `parse_lisp_query` is never used [INFO] [stderr] --> src/biordf/lang/parser.rs:140:4 [INFO] [stderr] | [INFO] [stderr] 140 | fn parse_lisp_query(tokens: &mut Vec) -> QueryExpr { [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: call to `.clone()` on a reference in this situation does nothing [INFO] [stderr] --> src/biordf/lang/parser.rs:133:27 [INFO] [stderr] | [INFO] [stderr] 133 | let user_query = query.clone(); [INFO] [stderr] | ^^^^^^^^ help: remove this redundant call [INFO] [stderr] | [INFO] [stderr] = note: the type `str` does not implement `Clone`, so calling `clone` on `&str` copies the reference, which does not do anything and can be removed [INFO] [stderr] = note: `#[warn(noop_method_call)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `Iri` [INFO] [stderr] --> src/biordf/core.rs:167:16 [INFO] [stderr] | [INFO] [stderr] 167 | use iref::{Iri, IriBuf}; [INFO] [stderr] | ^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Endpoint` and `PagerIterator` [INFO] [stderr] --> src/biordf/core.rs:512:42 [INFO] [stderr] | [INFO] [stderr] 512 | use crate::biordf::core::searching::{Endpoint, Pageable, Pager, PagerIterator, SearchSize}; [INFO] [stderr] | ^^^^^^^^ ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `data::OmicsDiResponse` [INFO] [stderr] --> src/biordf/core.rs:514:59 [INFO] [stderr] | [INFO] [stderr] 514 | use crate::biordf::api::omicsdi::{api::SearchBuilder, data::OmicsDiResponse}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `dataset::DatasetView` [INFO] [stderr] --> src/biordf/core.rs:641:21 [INFO] [stderr] | [INFO] [stderr] 641 | use rdf_types::{dataset::DatasetView, static_iref::iri}; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `out` [INFO] [stderr] --> src/biordf/core.rs:554:13 [INFO] [stderr] | [INFO] [stderr] 554 | let out = r.total_hits()?; [INFO] [stderr] | ^^^ help: if this is intentional, prefix it with an underscore: `_out` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `results` [INFO] [stderr] --> src/biordf/core.rs:560:17 [INFO] [stderr] | [INFO] [stderr] 560 | let results = part.search()?; [INFO] [stderr] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_results` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `parsed` [INFO] [stderr] --> src/biordf/api/ols.rs:461:13 [INFO] [stderr] | [INFO] [stderr] 461 | let parsed: ApiResponse = serde_json::from_str(json_data).expect("Failed to parse JSON"); [INFO] [stderr] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_parsed` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/biordf/api/omicsdi.rs:596:13 [INFO] [stderr] | [INFO] [stderr] 596 | let mut x = binding.start(1).size(10).query("s"); [INFO] [stderr] | ----^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/biordf/io/formats.rs:18:21 [INFO] [stderr] | [INFO] [stderr] 18 | let mut file = OpenOptions::new() [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function `null_check` is never used [INFO] [stderr] --> src/biordf/api/ols.rs:332:8 [INFO] [stderr] | [INFO] [stderr] 332 | fn null_check<'de, D>(deserializer: D) -> Result [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `rdf-bio` (lib) generated 45 warnings (run `cargo fix --lib -p rdf-bio` to apply 17 suggestions) [INFO] [stderr] warning: `rdf-bio` (lib test) generated 40 warnings (30 duplicates) (run `cargo fix --lib -p rdf-bio --tests` to apply 6 suggestions) [INFO] [stderr] warning: unused import: `csv::WriterBuilder as CsvWriterBuilder` [INFO] [stderr] --> src/main.rs:4:5 [INFO] [stderr] | [INFO] [stderr] 4 | use csv::WriterBuilder as CsvWriterBuilder; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::fs::OpenOptions` [INFO] [stderr] --> src/main.rs:14:5 [INFO] [stderr] | [INFO] [stderr] 14 | use std::fs::OpenOptions; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:99:17 [INFO] [stderr] | [INFO] [stderr] 99 | w.serialize(&results); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] help: use `let _ = ...` to ignore the resulting value [INFO] [stderr] | [INFO] [stderr] 99 | let _ = w.serialize(&results); [INFO] [stderr] | +++++++ [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:103:17 [INFO] [stderr] | [INFO] [stderr] 103 | w.serialize(&results); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] help: use `let _ = ...` to ignore the resulting value [INFO] [stderr] | [INFO] [stderr] 103 | let _ = w.serialize(&results); [INFO] [stderr] | +++++++ [INFO] [stderr] [INFO] [stderr] warning: `rdf-bio` (bin "rdfbio" test) generated 4 warnings (run `cargo fix --bin "rdfbio" --tests` to apply 2 suggestions) [INFO] [stderr] Finished `test` profile [optimized + debuginfo] target(s) in 0.36s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/rdfbio-21bd8c1b969921af) [INFO] [stdout] [INFO] [stdout] running 20 tests [INFO] [stdout] test biordf::api::ols::tests::test_ols_taxa_parse ... ok [INFO] [stdout] test biordf::api::omicsdi::tests::test_setters ... ok [INFO] [stdout] test biordf::api::omicsdi::tests::test_pre_search_validation_error_size - should panic ... ok [INFO] [stdout] test biordf::api::omicsdi::tests::test_pre_search_validation_error_size_and_start - should panic ... ok [INFO] [stdout] test biordf::core::remote::test_double_encode ... ok [INFO] [stdout] test biordf::core::tests::test_basic_traits ... ok [INFO] [stdout] test biordf::core::tests::test_ld ... ok [INFO] [stdout] test biordf::api::omicsdi::tests::test_request_errors ... FAILED [INFO] [stdout] test biordf::api::omicsdi::tests::test_input ... FAILED [INFO] [stdout] test biordf::api::omicsdi::tests::test_request_errors_2 ... FAILED [INFO] [stdout] test biordf::lang::parser::tests::test_dsl_complex ... ignored [INFO] [stdout] test biordf::lang::parser::tests::test_dsl_easy ... ignored [INFO] [stdout] test biordf::lang::parser::tests::test_dsl_easy_wrong_paren ... ignored [INFO] [stdout] test biordf::api::ols::tests::test_ols_ncbi ... FAILED [INFO] [stdout] test biordf::core::identifiers::test_identifiers ... FAILED [INFO] [stdout] test biordf::core::identifiers::test_identifiers_not_found ... FAILED [INFO] [stdout] test biordf::core::tests::test_paging_max_size ... FAILED [INFO] [stdout] test biordf::core::tests::test_paging ... FAILED [INFO] [stdout] test biordf::core::tests::test_paging_small_results_size ... FAILED [INFO] [stdout] test biordf::core::tests::test_paging_api ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- biordf::api::omicsdi::tests::test_request_errors stdout ---- [INFO] [stdout] Error: "Wrong error value" [INFO] [stdout] [INFO] [stdout] ---- biordf::api::omicsdi::tests::test_input stdout ---- [INFO] [stdout] Error: RequestFailed(500, "Failed to send request", "https://www.omicsdi.org/ws/dataset/search?query=E-GEOD-5003&start=0&size=2") [INFO] [stdout] [INFO] [stdout] ---- biordf::api::omicsdi::tests::test_request_errors_2 stdout ---- [INFO] [stdout] Error: "Wrong error value" [INFO] [stdout] [INFO] [stdout] ---- biordf::api::ols::tests::test_ols_ncbi stdout ---- [INFO] [stdout] [2025-06-28T09:10:37Z INFO rdfbio::biordf::api::ols::api] Sending query: https://www.ebi.ac.uk/ols4/api/v2/ontologies/ncbitaxon/classes?size=2&search=Bremia [INFO] [stdout] Error: RequestFailed(500, "Failed to send request", "https://www.ebi.ac.uk/ols4/api/v2/ontologies/ncbitaxon/classes?size=2&search=Bremia") [INFO] [stdout] [INFO] [stdout] ---- biordf::core::identifiers::test_identifiers stdout ---- [INFO] [stdout] Error: RequestFailed(500, "Failed to send request", "http://identifiers.org/bioproject:PRJNA558612") [INFO] [stdout] [INFO] [stdout] ---- biordf::core::identifiers::test_identifiers_not_found stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'biordf::core::identifiers::test_identifiers_not_found' panicked at src/biordf/core.rs:132:23: [INFO] [stdout] assertion `left == right` failed [INFO] [stdout] left: "Request failed with status code 500 Internal Server Error: Failed to send request url was http://identifiers.org/bioproject:PRJ558612" [INFO] [stdout] right: "Request failed with status code 404 Not Found: This identifier does not resolve! http://identifiers.org/bioproject:PRJ558612 url was http://identifiers.org/bioproject:PRJ558612" [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x571fcc239282 - std::backtrace_rs::backtrace::libunwind::trace::h5edb72cc539d8d33 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x571fcc239282 - std::backtrace_rs::backtrace::trace_unsynchronized::h73d186ef976c5ae2 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x571fcc239282 - std::sys::backtrace::_print_fmt::h4410012d384fde01 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x571fcc239282 - ::fmt::h281a579a27d691d5 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x571fcc2621d3 - core::fmt::rt::Argument::fmt::h4c31bb6a3f4e4ed6 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x571fcc2621d3 - core::fmt::write::hd1f1283e971fbb36 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/fmt/mod.rs:1465:25 [INFO] [stdout] 6: 0x571fcc235843 - std::io::default_write_fmt::h6d6cb3ff48bb6394 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x571fcc235843 - std::io::Write::write_fmt::h976b7a346c630898 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x571fcc2390d2 - std::sys::backtrace::BacktraceLock::print::h7cc2f8a0b7549773 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x571fcc23a7fc - std::panicking::default_hook::{{closure}}::hc18f11ca3cc980d1 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:300:27 [INFO] [stdout] 10: 0x571fcc23a652 - std::panicking::default_hook::h5207cd5928e5a9d2 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:324:9 [INFO] [stdout] 11: 0x571fcbf1b994 - as core::ops::function::Fn>::call::h53735dbb2fff5e8e [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 12: 0x571fcbf1b994 - test::test_main_with_exit_callback::{{closure}}::h8629ce54f7c62158 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x571fcc23b2db - as core::ops::function::Fn>::call::hdd01dfa4f5d59fd2 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/alloc/src/boxed.rs:1980:9 [INFO] [stdout] 14: 0x571fcc23b2db - std::panicking::rust_panic_with_hook::he2975323910480e2 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:841:13 [INFO] [stdout] 15: 0x571fcc23afaa - std::panicking::begin_panic_handler::{{closure}}::hf6a73f8f68d2901d [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:706:13 [INFO] [stdout] 16: 0x571fcc239789 - std::sys::backtrace::__rust_end_short_backtrace::h91c7517b8fba4182 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 17: 0x571fcc23ac3d - __rustc[c30fa7112bbf6ac0]::rust_begin_unwind [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:697:5 [INFO] [stdout] 18: 0x571fcc25ff60 - core::panicking::panic_fmt::h1dc18eebb9b6550e [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x571fcc2602f4 - core::panicking::assert_failed_inner::h18974c672091d19b [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/panicking.rs:432:17 [INFO] [stdout] 20: 0x571fcbed306f - core::panicking::assert_failed::h0c8e9be1c9f1455f [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/panicking.rs:387:5 [INFO] [stdout] 21: 0x571fcbeccbac - rdfbio::biordf::core::identifiers::test_identifiers_not_found::h7b926bd410f6a2dd [INFO] [stdout] at /opt/rustwide/workdir/src/biordf/core.rs:132:23 [INFO] [stdout] 22: 0x571fcbed2189 - rdfbio::biordf::core::identifiers::test_identifiers_not_found::{{closure}}::h25a48b5c424bfbe8 [INFO] [stdout] at /opt/rustwide/workdir/src/biordf/core.rs:128:40 [INFO] [stdout] 23: 0x571fcbed2189 - core::ops::function::FnOnce::call_once::h09e39cb440bd79db [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x571fcbf2108b - core::ops::function::FnOnce::call_once::hdd80366119caeff9 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 25: 0x571fcbf2108b - test::__rust_begin_short_backtrace::h60798cb0fdc462bd [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/test/src/lib.rs:648:18 [INFO] [stdout] 26: 0x571fcbf2030e - test::run_test_in_process::{{closure}}::h81bd62fe0ddb1cae [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/test/src/lib.rs:671:74 [INFO] [stdout] 27: 0x571fcbf2030e - as core::ops::function::FnOnce<()>>::call_once::h6ee6466477e4c0dc [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 28: 0x571fcbf2030e - std::panicking::catch_unwind::do_call::h01a79315147a2ca1 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:589:40 [INFO] [stdout] 29: 0x571fcbf2030e - std::panicking::catch_unwind::h831c87e90ef4f2d8 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:552:19 [INFO] [stdout] 30: 0x571fcbf2030e - std::panic::catch_unwind::h50e9876bcbc7c37f [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x571fcbf2030e - test::run_test_in_process::hd57ee4367ef533b2 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/test/src/lib.rs:671:27 [INFO] [stdout] 32: 0x571fcbf2030e - test::run_test::{{closure}}::hd180abfe8d10b90d [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/test/src/lib.rs:592:43 [INFO] [stdout] 33: 0x571fcbee3f04 - test::run_test::{{closure}}::hadea4433d10ac366 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/test/src/lib.rs:622:41 [INFO] [stdout] 34: 0x571fcbee3f04 - std::sys::backtrace::__rust_begin_short_backtrace::hb136c48ddd0ced72 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 35: 0x571fcbee77fa - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h9e392173a704e81a [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x571fcbee77fa - as core::ops::function::FnOnce<()>>::call_once::h858a87db574d2ff4 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 37: 0x571fcbee77fa - std::panicking::catch_unwind::do_call::hff7ec4d4a59ca346 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:589:40 [INFO] [stdout] 38: 0x571fcbee77fa - std::panicking::catch_unwind::h74378fed914955a4 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panicking.rs:552:19 [INFO] [stdout] 39: 0x571fcbee77fa - std::panic::catch_unwind::hd644e75c809e87ce [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x571fcbee77fa - std::thread::Builder::spawn_unchecked_::{{closure}}::h5c4ce65e6ea67c65 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x571fcbee77fa - core::ops::function::FnOnce::call_once{{vtable.shim}}::h2c391219c93831ae [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 42: 0x571fcc23e457 - as core::ops::function::FnOnce>::call_once::ha02f1268c87bf8cb [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 43: 0x571fcc23e457 - as core::ops::function::FnOnce>::call_once::ha9964535c0565e6a [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/alloc/src/boxed.rs:1966:9 [INFO] [stdout] 44: 0x571fcc23e457 - std::sys::pal::unix::thread::Thread::new::thread_start::hd6a2768613f757f7 [INFO] [stdout] at /rustc/0936b3db0ae648ba2d5b60eb08cf4faf2ddab0c6/library/std/src/sys/pal/unix/thread.rs:97:17 [INFO] [stdout] 45: 0x78fadeb38aa4 - [INFO] [stdout] 46: 0x78fadebc5a34 - clone [INFO] [stdout] 47: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- biordf::core::tests::test_paging_max_size stdout ---- [INFO] [stdout] Error: Api("Request failed with status code 500 Internal Server Error: Failed to send request url was https://www.omicsdi.org/ws/dataset/search?query=E-GEOD-5003&start=2&size=1") [INFO] [stdout] [INFO] [stdout] ---- biordf::core::tests::test_paging stdout ---- [INFO] [stdout] Error: Api("Request failed with status code 500 Internal Server Error: Failed to send request url was https://www.omicsdi.org/ws/dataset/search?query=Fish&start=4&size=1") [INFO] [stdout] [INFO] [stdout] ---- biordf::core::tests::test_paging_small_results_size stdout ---- [INFO] [stdout] [2025-06-28T09:10:38Z INFO rdfbio::biordf::core::searching] setting start 0 and step 1 [INFO] [stdout] [2025-06-28T09:10:38Z INFO rdfbio::biordf::core::searching] searching - start = 0 size = 1 [INFO] [stdout] Error: Api("Request failed with status code 500 Internal Server Error: Failed to send request url was https://www.omicsdi.org/ws/dataset/search?query=GSE291252&start=0&size=1") [INFO] [stdout] [INFO] [stdout] ---- biordf::core::tests::test_paging_api stdout ---- [INFO] [stdout] [2025-06-28T09:10:38Z INFO rdfbio::biordf::core::searching] setting start 0 and step 1 [INFO] [stdout] [2025-06-28T09:10:38Z INFO rdfbio::biordf::core::searching] searching - start = 0 size = 1 [INFO] [stdout] Error: Api("Request failed with status code 500 Internal Server Error: Failed to send request url was https://www.omicsdi.org/ws/dataset/search?query=Fish&start=0&size=1") [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] biordf::api::ols::tests::test_ols_ncbi [INFO] [stdout] biordf::api::omicsdi::tests::test_input [INFO] [stdout] biordf::api::omicsdi::tests::test_request_errors [INFO] [stdout] biordf::api::omicsdi::tests::test_request_errors_2 [INFO] [stdout] biordf::core::identifiers::test_identifiers [INFO] [stdout] biordf::core::identifiers::test_identifiers_not_found [INFO] [stdout] biordf::core::tests::test_paging [INFO] [stdout] biordf::core::tests::test_paging_api [INFO] [stdout] biordf::core::tests::test_paging_max_size [INFO] [stdout] biordf::core::tests::test_paging_small_results_size [INFO] [stdout] [INFO] [stdout] test result: FAILED. 7 passed; 10 failed; 3 ignored; 0 measured; 0 filtered out; finished in 1.09s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "08d3bbaaa3da079f495bdbaebce5f95387073e46c75ce08a9649788918e817cb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "08d3bbaaa3da079f495bdbaebce5f95387073e46c75ce08a9649788918e817cb", kill_on_drop: false }` [INFO] [stdout] 08d3bbaaa3da079f495bdbaebce5f95387073e46c75ce08a9649788918e817cb