[INFO] cloning repository https://github.com/JamesKane/DecodingUsTools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/JamesKane/DecodingUsTools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJamesKane%2FDecodingUsTools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJamesKane%2FDecodingUsTools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f29f16116357e86b6f7c86ef45ea50a2a1c8fb24
[INFO] testing JamesKane/DecodingUsTools/f29f16116357e86b6f7c86ef45ea50a2a1c8fb24 against master#b03b3a7ec92682be2917540b679478d41c95a30c for pr-137122-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJamesKane%2FDecodingUsTools" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/JamesKane/DecodingUsTools
[INFO] finished tweaking git repo https://github.com/JamesKane/DecodingUsTools
[INFO] tweaked toml for git repo https://github.com/JamesKane/DecodingUsTools written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/JamesKane/DecodingUsTools on toolchain b03b3a7ec92682be2917540b679478d41c95a30c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b03b3a7ec92682be2917540b679478d41c95a30c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/JamesKane/DecodingUsTools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+b03b3a7ec92682be2917540b679478d41c95a30c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
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[INFO] [stderr]   Downloaded directories v6.0.0
[INFO] [stderr]   Downloaded bgzip v0.2.2
[INFO] [stderr]   Downloaded protobuf-codegen v3.7.2
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded protobuf-parse v3.7.2
[INFO] [stderr]   Downloaded niffler v2.5.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
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[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded protobuf-support v3.7.2
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[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] [stderr]   Downloaded curl-sys v0.4.80+curl-8.12.1
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+b03b3a7ec92682be2917540b679478d41c95a30c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 48c0420d8d7eb15a2a5908f77f68986f9255b0b01da947bc5f81bda66f001d2a
[INFO] running `Command { std: "docker" "start" "-a" "48c0420d8d7eb15a2a5908f77f68986f9255b0b01da947bc5f81bda66f001d2a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "48c0420d8d7eb15a2a5908f77f68986f9255b0b01da947bc5f81bda66f001d2a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "48c0420d8d7eb15a2a5908f77f68986f9255b0b01da947bc5f81bda66f001d2a", kill_on_drop: false }`
[INFO] [stdout] 48c0420d8d7eb15a2a5908f77f68986f9255b0b01da947bc5f81bda66f001d2a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+b03b3a7ec92682be2917540b679478d41c95a30c" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] beeb47ff7c727edb1219f8ed37fe0ec67236695dd8d15d49d626667ae938687c
[INFO] running `Command { std: "docker" "start" "-a" "beeb47ff7c727edb1219f8ed37fe0ec67236695dd8d15d49d626667ae938687c", kill_on_drop: false }`
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[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling tower v0.5.2
[INFO] [stderr]    Compiling decodingus-tools v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling csv v1.3.1
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[INFO] [stderr]    Compiling digest v0.10.7
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[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling ndarray v0.16.1
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[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling encoding_rs v0.8.35
[INFO] [stderr]    Compiling cpufeatures v0.2.17
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling iana-time-zone v0.1.63
[INFO] [stderr]    Compiling ipnet v2.11.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling triple_accel v0.4.0
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[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling niffler v2.5.0
[INFO] [stderr] error: failed to run custom build command for `decodingus-tools v0.1.0 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/decodingus-tools-654b5d5cddac5e2e/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at build.rs:12:10:
[INFO] [stderr]   Protobuf codegen failed: failed to create file `src/generated/gam.rs`: Read-only file system (os error 30)
[INFO] [stderr] 
[INFO] [stderr]   Caused by:
[INFO] [stderr]       Read-only file system (os error 30)
[INFO] [stderr] 
[INFO] [stderr]   Stack backtrace:
[INFO] [stderr]      0: anyhow::error::<impl core::convert::From<E> for anyhow::Error>::from
[INFO] [stderr]      1: <core::result::Result<T,F> as core::ops::try_trait::FromResidual<core::result::Result<core::convert::Infallible,E>>>::from_residual
[INFO] [stderr]      2: protobuf_codegen::gen_and_write::gen_and_write
[INFO] [stderr]      3: protobuf_codegen::codegen::Codegen::run
[INFO] [stderr]      4: build_script_build::main
[INFO] [stderr]      5: core::ops::function::FnOnce::call_once
[INFO] [stderr]      6: std::sys::backtrace::__rust_begin_short_backtrace
[INFO] [stderr]      7: std::rt::lang_start::{{closure}}
[INFO] [stderr]      8: core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/core/src/ops/function.rs:284:21
[INFO] [stderr]      9: std::panicking::catch_unwind::do_call
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     10: std::panicking::catch_unwind
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     11: std::panic::catch_unwind
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panic.rs:359:14
[INFO] [stderr]     12: std::rt::lang_start_internal::{{closure}}
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/rt.rs:175:24
[INFO] [stderr]     13: std::panicking::catch_unwind::do_call
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     14: std::panicking::catch_unwind
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     15: std::panic::catch_unwind
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panic.rs:359:14
[INFO] [stderr]     16: std::rt::lang_start_internal
[INFO] [stderr]                at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/rt.rs:171:5
[INFO] [stderr]     17: std::rt::lang_start
[INFO] [stderr]     18: main
[INFO] [stderr]     19: <unknown>
[INFO] [stderr]     20: __libc_start_main
[INFO] [stderr]     21: _start
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x64a25fbbc352 - std::backtrace_rs::backtrace::libunwind::trace::hf6dd235ae0786829
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x64a25fbbc352 - std::backtrace_rs::backtrace::trace_unsynchronized::h3a5b54e78104e8b2
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x64a25fbbc352 - std::sys::backtrace::_print_fmt::hca7a5c1644e21919
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x64a25fbbc352 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h38110959524b373c
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x64a25fbe4453 - core::fmt::rt::Argument::fmt::h391eb3fdbf3d4042
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x64a25fbe4453 - core::fmt::write::h5b87140645224122
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/core/src/fmt/mod.rs:1465:25
[INFO] [stderr]      6:     0x64a25fbb9663 - std::io::default_write_fmt::h0f114d7226b96248
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x64a25fbb9663 - std::io::Write::write_fmt::h89e75c4a7af19239
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x64a25fbbc1a2 - std::sys::backtrace::BacktraceLock::print::hcd755c38f62e4492
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x64a25fbbd336 - std::panicking::default_hook::{{closure}}::h351f33591b26e6e7
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:300:27
[INFO] [stderr]     10:     0x64a25fbbd139 - std::panicking::default_hook::he5bba7bf0a373c6e
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x64a25fbbdc02 - std::panicking::rust_panic_with_hook::hdf456b43e6535023
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x64a25fbbda9a - std::panicking::begin_panic_handler::{{closure}}::he1c1ab0b84006a97
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:706:13
[INFO] [stderr]     13:     0x64a25fbbc849 - std::sys::backtrace::__rust_end_short_backtrace::h2a71da996e10b8a0
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/sys/backtrace.rs:168:18
[INFO] [stderr]     14:     0x64a25fbbd72d - __rustc[92197b79f0fe8095]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x64a25fbe1d90 - core::panicking::panic_fmt::h723bf1d52f6dad29
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x64a25fbe2236 - core::result::unwrap_failed::hee42034aaecc2a24
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/core/src/result.rs:1761:5
[INFO] [stderr]     17:     0x64a25f69df90 - core::result::Result<T,E>::expect::h2056787c568d02bd
[INFO] [stderr]     18:     0x64a25f5fd516 - build_script_build::main::hd9b0fc4cd467dd14
[INFO] [stderr]     19:     0x64a25f5fd0a3 - core::ops::function::FnOnce::call_once::haaf14c8eab93092b
[INFO] [stderr]     20:     0x64a25f5fd086 - std::sys::backtrace::__rust_begin_short_backtrace::ha345cb9bf8bfc06b
[INFO] [stderr]     21:     0x64a25f5fd059 - std::rt::lang_start::{{closure}}::hd50d1ad8f438e4bd
[INFO] [stderr]     22:     0x64a25fbb3be0 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hd25fc0ca75d54018
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/core/src/ops/function.rs:284:21
[INFO] [stderr]     23:     0x64a25fbb3be0 - std::panicking::catch_unwind::do_call::ha488b7241416766f
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     24:     0x64a25fbb3be0 - std::panicking::catch_unwind::h81a5714cf9e2c51e
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     25:     0x64a25fbb3be0 - std::panic::catch_unwind::haf54ebde94b26b04
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panic.rs:359:14
[INFO] [stderr]     26:     0x64a25fbb3be0 - std::rt::lang_start_internal::{{closure}}::h4fa23b31c3653423
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/rt.rs:175:24
[INFO] [stderr]     27:     0x64a25fbb3be0 - std::panicking::catch_unwind::do_call::h60c222eb58f45e30
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     28:     0x64a25fbb3be0 - std::panicking::catch_unwind::h3a5c3ee5a2867e71
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     29:     0x64a25fbb3be0 - std::panic::catch_unwind::h93836bffc0bad4f2
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/panic.rs:359:14
[INFO] [stderr]     30:     0x64a25fbb3be0 - std::rt::lang_start_internal::h25802ecab1c1e1f0
[INFO] [stderr]                                  at /rustc/b03b3a7ec92682be2917540b679478d41c95a30c/library/std/src/rt.rs:171:5
[INFO] [stderr]     31:     0x64a25f5fd041 - std::rt::lang_start::hc3f55a17000aaace
[INFO] [stderr]     32:     0x64a25f5fd595 - main
[INFO] [stderr]     33:     0x73843eef81ca - <unknown>
[INFO] [stderr]     34:     0x73843eef828b - __libc_start_main
[INFO] [stderr]     35:     0x64a25f5fccd5 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "beeb47ff7c727edb1219f8ed37fe0ec67236695dd8d15d49d626667ae938687c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "beeb47ff7c727edb1219f8ed37fe0ec67236695dd8d15d49d626667ae938687c", kill_on_drop: false }`
[INFO] [stdout] beeb47ff7c727edb1219f8ed37fe0ec67236695dd8d15d49d626667ae938687c