[INFO] cloning repository https://github.com/patbohn/bamStats
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/patbohn/bamStats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpatbohn%2FbamStats", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpatbohn%2FbamStats'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a2a12c269e38bb6a0af7a868afbf5fdac5b6241d
[INFO] checking patbohn/bamStats against master#cfe9ffcd7c2d63fd3e0fc33a8d23ac4f0d50efe9 for pr-136968
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpatbohn%2FbamStats" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/patbohn/bamStats on toolchain cfe9ffcd7c2d63fd3e0fc33a8d23ac4f0d50efe9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cfe9ffcd7c2d63fd3e0fc33a8d23ac4f0d50efe9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/patbohn/bamStats
[INFO] finished tweaking git repo https://github.com/patbohn/bamStats
[INFO] tweaked toml for git repo https://github.com/patbohn/bamStats written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/patbohn/bamStats already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cfe9ffcd7c2d63fd3e0fc33a8d23ac4f0d50efe9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bam v0.1.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+cfe9ffcd7c2d63fd3e0fc33a8d23ac4f0d50efe9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ecb208934114da9a8b48ceade505252d728db18e346ff1595d62e3992c5139ab
[INFO] running `Command { std: "docker" "start" "-a" "ecb208934114da9a8b48ceade505252d728db18e346ff1595d62e3992c5139ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ecb208934114da9a8b48ceade505252d728db18e346ff1595d62e3992c5139ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ecb208934114da9a8b48ceade505252d728db18e346ff1595d62e3992c5139ab", kill_on_drop: false }`
[INFO] [stdout] ecb208934114da9a8b48ceade505252d728db18e346ff1595d62e3992c5139ab
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+cfe9ffcd7c2d63fd3e0fc33a8d23ac4f0d50efe9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0c69863d716113b01ea83bcc8db6455eb1cc8f9f1550151c5b089caeb0dc71c7
[INFO] running `Command { std: "docker" "start" "-a" "0c69863d716113b01ea83bcc8db6455eb1cc8f9f1550151c5b089caeb0dc71c7", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.168
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking unicode-width v0.1.14
[INFO] [stderr]    Compiling unicode-segmentation v1.12.0
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]     Checking strsim v0.8.0
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]     Checking miniz_oxide v0.8.0
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]     Checking flate2 v1.0.35
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking bam v0.1.4
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]     Checking structopt v0.3.26
[INFO] [stderr]     Checking bamStats v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `create_dir_all`
[INFO] [stdout]  --> src/main.rs:1:15
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::fs::{create_dir_all, File};
[INFO] [stdout]   |               ^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `create_dir_all`
[INFO] [stdout]  --> src/main.rs:1:15
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::fs::{create_dir_all, File};
[INFO] [stdout]   |               ^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sequence`
[INFO] [stdout]   --> src/main.rs:89:13
[INFO] [stdout]    |
[INFO] [stdout] 89 |         let sequence = String::from_utf8_lossy(&raw_seq);
[INFO] [stdout]    |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `run_id`
[INFO] [stdout]   --> src/main.rs:93:13
[INFO] [stdout]    |
[INFO] [stdout] 93 |         let run_id = raw_run_id.split("_").next().unwrap_or("NA");
[INFO] [stdout]    |             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_run_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `sequence`
[INFO] [stdout]   --> src/main.rs:89:13
[INFO] [stdout]    |
[INFO] [stdout] 89 |         let sequence = String::from_utf8_lossy(&raw_seq);
[INFO] [stdout]    |             ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `run_id`
[INFO] [stdout]   --> src/main.rs:93:13
[INFO] [stdout]    |
[INFO] [stdout] 93 |         let run_id = raw_run_id.split("_").next().unwrap_or("NA");
[INFO] [stdout]    |             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_run_id`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `phred_to_utf8` is never used
[INFO] [stdout]    --> src/main.rs:233:4
[INFO] [stdout]     |
[INFO] [stdout] 233 | fn phred_to_utf8(quality_array: &[u8]) -> String {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `moves_to_utf8` is never used
[INFO] [stdout]    --> src/main.rs:249:4
[INFO] [stdout]     |
[INFO] [stdout] 249 | fn moves_to_utf8(moves: &[usize]) -> (String, Vec<usize>) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `phred_to_utf8` is never used
[INFO] [stdout]    --> src/main.rs:233:4
[INFO] [stdout]     |
[INFO] [stdout] 233 | fn phred_to_utf8(quality_array: &[u8]) -> String {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `moves_to_utf8` is never used
[INFO] [stdout]    --> src/main.rs:249:4
[INFO] [stdout]     |
[INFO] [stdout] 249 | fn moves_to_utf8(moves: &[usize]) -> (String, Vec<usize>) {
[INFO] [stdout]     |    ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.60s
[INFO] running `Command { std: "docker" "inspect" "0c69863d716113b01ea83bcc8db6455eb1cc8f9f1550151c5b089caeb0dc71c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0c69863d716113b01ea83bcc8db6455eb1cc8f9f1550151c5b089caeb0dc71c7", kill_on_drop: false }`
[INFO] [stdout] 0c69863d716113b01ea83bcc8db6455eb1cc8f9f1550151c5b089caeb0dc71c7