[INFO] cloning repository https://github.com/keithyin/gskits [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/gskits" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgskits", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgskits'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 52937b4de94d091d929d79aba2559008211c1be7 [INFO] testing keithyin/gskits against master#552a959051cebf8f88a8f558399baf733bec9ce0 for pr-136932 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fgskits" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/keithyin/gskits on toolchain 552a959051cebf8f88a8f558399baf733bec9ce0 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+552a959051cebf8f88a8f558399baf733bec9ce0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/keithyin/gskits [INFO] finished tweaking git repo https://github.com/keithyin/gskits [INFO] tweaked toml for git repo https://github.com/keithyin/gskits written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/keithyin/gskits already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+552a959051cebf8f88a8f558399baf733bec9ce0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+552a959051cebf8f88a8f558399baf733bec9ce0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fde77a0040c4ea6f1d8a6d6d77b81230a89b33d3cc52c31c50a4594de49879af [INFO] running `Command { std: "docker" "start" "-a" "fde77a0040c4ea6f1d8a6d6d77b81230a89b33d3cc52c31c50a4594de49879af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fde77a0040c4ea6f1d8a6d6d77b81230a89b33d3cc52c31c50a4594de49879af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fde77a0040c4ea6f1d8a6d6d77b81230a89b33d3cc52c31c50a4594de49879af", kill_on_drop: false }` [INFO] [stdout] fde77a0040c4ea6f1d8a6d6d77b81230a89b33d3cc52c31c50a4594de49879af [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+552a959051cebf8f88a8f558399baf733bec9ce0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 7ac51de1a3cc11efabddf34c60de72d060b24551c756cc705eb6fd33f4826418 [INFO] running `Command { std: "docker" "start" "-a" "7ac51de1a3cc11efabddf34c60de72d060b24551c756cc705eb6fd33f4826418", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling libc v0.2.167 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling litemap v0.7.4 [INFO] [stderr] Compiling writeable v0.5.5 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling icu_locid_transform_data v1.5.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling serde v1.0.215 [INFO] [stderr] Compiling libloading v0.8.5 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling rustversion v1.0.18 [INFO] [stderr] Compiling bytemuck v1.20.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling icu_properties_data v1.5.0 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling safe_arch v0.7.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling utf16_iter v1.0.5 [INFO] [stderr] Compiling write16 v1.0.0 [INFO] [stderr] Compiling icu_normalizer_data v1.5.0 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling wide v0.7.30 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling syn v2.0.89 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling anyhow v1.0.93 [INFO] [stderr] Compiling hashbrown v0.15.2 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling cc v1.2.2 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling thiserror v2.0.8 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling portable-atomic v1.10.0 [INFO] [stderr] Compiling indexmap v2.6.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling unicode-width v0.1.14 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling itoa v1.0.14 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling console v0.15.8 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling itertools v0.13.0 [INFO] [stderr] Compiling tracing-core v0.1.33 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling openssl-src v300.4.1+3.4.0 [INFO] [stderr] Compiling cmake v0.1.52 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v4.5.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling number_prefix v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling iana-time-zone v0.1.61 [INFO] [stderr] Compiling pin-project-lite v0.2.15 [INFO] [stderr] Compiling sha1_smol v1.0.1 [INFO] [stderr] Compiling unicode-width v0.2.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling uuid v1.11.0 [INFO] [stderr] Compiling chrono v0.4.38 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling indicatif v0.17.9 [INFO] [stderr] Compiling openssl-sys v0.9.104 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling curl-sys v0.4.78+curl-8.11.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.5 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.215 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.8 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling tracing-attributes v0.1.28 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling tracing v0.1.41 [INFO] [stderr] Compiling zerofrom v0.1.5 [INFO] [stderr] Compiling yoke v0.7.5 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling zerovec v0.10.4 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling tinystr v0.7.6 [INFO] [stderr] Compiling icu_collections v1.5.0 [INFO] [stderr] Compiling icu_locid v1.5.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling nalgebra v0.32.6 [INFO] [stderr] Compiling icu_provider v1.5.0 [INFO] [stderr] Compiling icu_locid_transform v1.5.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling icu_properties v1.5.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.10.0 [INFO] [stderr] Compiling icu_normalizer v1.5.0 [INFO] [stderr] Compiling idna_adapter v1.2.0 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling statrs v0.17.1 [INFO] [stderr] Compiling bio v2.0.3 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling gskits v0.12.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 27s [INFO] running `Command { std: "docker" "inspect" "7ac51de1a3cc11efabddf34c60de72d060b24551c756cc705eb6fd33f4826418", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7ac51de1a3cc11efabddf34c60de72d060b24551c756cc705eb6fd33f4826418", kill_on_drop: false }` [INFO] [stdout] 7ac51de1a3cc11efabddf34c60de72d060b24551c756cc705eb6fd33f4826418 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+552a959051cebf8f88a8f558399baf733bec9ce0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a4df1b9635a069c64b2825092d8fb925cc0e883b039922ed07f1325c60e1b816 [INFO] running `Command { std: "docker" "start" "-a" "a4df1b9635a069c64b2825092d8fb925cc0e883b039922ed07f1325c60e1b816", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling serde_json v1.0.133 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling half v1.8.3 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling oorandom v11.1.4 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling criterion-plot v0.4.5 [INFO] [stderr] Compiling criterion v0.3.6 [INFO] [stderr] Compiling gskits v0.12.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 14.22s [INFO] running `Command { std: "docker" "inspect" "a4df1b9635a069c64b2825092d8fb925cc0e883b039922ed07f1325c60e1b816", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a4df1b9635a069c64b2825092d8fb925cc0e883b039922ed07f1325c60e1b816", kill_on_drop: false }` [INFO] [stdout] a4df1b9635a069c64b2825092d8fb925cc0e883b039922ed07f1325c60e1b816 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+552a959051cebf8f88a8f558399baf733bec9ce0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 5653e43055639deff8eaea1eafa08caa227cf75ea177c2074d9a13d7f6c448f0 [INFO] running `Command { std: "docker" "start" "-a" "5653e43055639deff8eaea1eafa08caa227cf75ea177c2074d9a13d7f6c448f0", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gskits-6b94b8f2ba9669d0) [INFO] [stdout] [INFO] [stdout] running 25 tests [INFO] [stdout] test dna::test::test_bio_alpha ... ok [INFO] [stdout] test ds::region::test::test_calcute_gaps ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_edge_cases ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_ideneity_special_case ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_long_ins_regions_in_query ... ok [INFO] [stdout] test ds::region::test::test_calcute_overlap_metrics ... ok [INFO] [stdout] test dna::test::test_reverse_complement ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_parse_cigar_str ... ok [INFO] [stdout] test matrix::transpose::test::test_transpose ... ok [INFO] [stdout] test gsbam::cigar_ext::tests::test_range_identity ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_test_plp_using_aligned_pairs_with_right_soft_clip ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_plp_cnts_with_blacklist ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_plp_cnts ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_test_plp_using_aligned_pairs_with_indel ... ok [INFO] [stdout] test matrix::transpose::test::test_transpose_blocked ... ok [INFO] [stdout] test phreq::test::test_phreq_list_2_err_list ... ok [INFO] [stdout] test phreq::test::test_phreq_list_2_quality ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_region_plp_cnts ... ok [INFO] [stdout] test phreq::test::test_phreq_list_2_quality_list ... ok [INFO] [stdout] test phreq::test::test_phreq2quality ... ok [INFO] [stdout] test test::test_alphabet ... ok [INFO] [stdout] test phreq::test::test_quality_2_phreq ... ok [INFO] [stdout] test utils::test::test_range_parser ... ok [INFO] [stdout] test gsbam::plp_counts_from_records::test::test_plp_within_region ... ok [INFO] [stdout] test poly_n::test::test_find_homopolymer_regions ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- poly_n::test::test_find_homopolymer_regions stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'poly_n::test::test_find_homopolymer_regions' panicked at src/poly_n.rs:259:9: [INFO] [stdout] assertion `left == right` failed [INFO] [stdout] left: [(0, 2, 65), (3, 5, 71)] [INFO] [stdout] right: [(0, 2, 67), (3, 5, 71)] [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x637f5c3b7130 - std::backtrace_rs::backtrace::libunwind::trace::hff7ffeb2055d56f7 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stdout] 1: 0x637f5c3b7130 - std::backtrace_rs::backtrace::trace_unsynchronized::he7b3446d48853094 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x637f5c3b7130 - std::sys::backtrace::_print_fmt::hc2f9f78a9d81f67e [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x637f5c3b7130 - ::fmt::h222ded249a1f0b37 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x637f5c3e1043 - core::fmt::rt::Argument::fmt::hf87ad28cd961f7a3 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/fmt/rt.rs:177:76 [INFO] [stdout] 5: 0x637f5c3e1043 - core::fmt::write::h9275005cf35b8a10 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/fmt/mod.rs:1449:21 [INFO] [stdout] 6: 0x637f5c3b3b63 - std::io::Write::write_fmt::h9c45a7064b117632 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/io/mod.rs:1890:15 [INFO] [stdout] 7: 0x637f5c3b6f82 - std::sys::backtrace::BacktraceLock::print::hd225c6688b44ae93 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 8: 0x637f5c3b855f - std::panicking::default_hook::{{closure}}::h2b0bdfbf5b027ac9 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:298:22 [INFO] [stdout] 9: 0x637f5c3b8378 - std::panicking::default_hook::ha8790851fc656c1a [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:322:9 [INFO] [stdout] 10: 0x637f5bc9f8a5 - as core::ops::function::Fn>::call::hdad4d0506655a157 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/alloc/src/boxed.rs:2030:9 [INFO] [stdout] 11: 0x637f5bc9f8a5 - test::test_main::{{closure}}::hdf61abd52acd3de0 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/test/src/lib.rs:135:21 [INFO] [stdout] 12: 0x637f5c3b9053 - as core::ops::function::Fn>::call::h52c5bf698b1366e5 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/alloc/src/boxed.rs:2030:9 [INFO] [stdout] 13: 0x637f5c3b9053 - std::panicking::rust_panic_with_hook::ha306bc05bdb5b696 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:839:13 [INFO] [stdout] 14: 0x637f5c3b8d0a - std::panicking::begin_panic_handler::{{closure}}::h2c0d6e717a62810c [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:704:13 [INFO] [stdout] 15: 0x637f5c3b7639 - std::sys::backtrace::__rust_end_short_backtrace::h1e7465e8c528d13d [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/sys/backtrace.rs:168:18 [INFO] [stdout] 16: 0x637f5c3b899d - rust_begin_unwind [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:695:5 [INFO] [stdout] 17: 0x637f5c3dec40 - core::panicking::panic_fmt::h0c17c793f18e9c3f [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/panicking.rs:75:14 [INFO] [stdout] 18: 0x637f5c3df06a - core::panicking::assert_failed_inner::h47e6c4468e9a6d85 [INFO] [stdout] 19: 0x637f5bc5683a - core::panicking::assert_failed::h1d0da51f531436ce [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/panicking.rs:380:5 [INFO] [stdout] 20: 0x637f5bc4de00 - gskits::poly_n::test::test_find_homopolymer_regions::h8782180f713e319b [INFO] [stdout] at /opt/rustwide/workdir/src/poly_n.rs:259:9 [INFO] [stdout] 21: 0x637f5bc4d5b7 - gskits::poly_n::test::test_find_homopolymer_regions::{{closure}}::h1ee93922cba2071b [INFO] [stdout] at /opt/rustwide/workdir/src/poly_n.rs:243:39 [INFO] [stdout] 22: 0x637f5bc3cf76 - core::ops::function::FnOnce::call_once::h53ea6dd74b045ac1 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 23: 0x637f5bca509b - core::ops::function::FnOnce::call_once::ha8d13c24f305262f [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 24: 0x637f5bca509b - test::__rust_begin_short_backtrace::hda7ed5913d26b4c3 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/test/src/lib.rs:637:18 [INFO] [stdout] 25: 0x637f5bca3f18 - test::run_test_in_process::{{closure}}::h98799ac8ad05dc17 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/test/src/lib.rs:660:60 [INFO] [stdout] 26: 0x637f5bca3f18 - as core::ops::function::FnOnce<()>>::call_once::h9915be725ed5cec7 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 27: 0x637f5bca3f18 - std::panicking::try::do_call::hdae5166dc0f6479b [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:587:40 [INFO] [stdout] 28: 0x637f5bca3f18 - std::panicking::try::h8fa0f35111734e43 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:550:19 [INFO] [stdout] 29: 0x637f5bca3f18 - std::panic::catch_unwind::h2c5c178909d676e7 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panic.rs:358:14 [INFO] [stdout] 30: 0x637f5bca3f18 - test::run_test_in_process::h2157e57f25733f22 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/test/src/lib.rs:660:27 [INFO] [stdout] 31: 0x637f5bca3f18 - test::run_test::{{closure}}::h22055a3e9dc56ab9 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/test/src/lib.rs:581:43 [INFO] [stdout] 32: 0x637f5bc66ed5 - test::run_test::{{closure}}::h0de666e52c64b314 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/test/src/lib.rs:611:41 [INFO] [stdout] 33: 0x637f5bc66ed5 - std::sys::backtrace::__rust_begin_short_backtrace::hc24dfc6dbc7f5867 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/sys/backtrace.rs:152:18 [INFO] [stdout] 34: 0x637f5bc6a85a - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::h036a075b14c8a889 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 35: 0x637f5bc6a85a - as core::ops::function::FnOnce<()>>::call_once::h77e5e1e1c11b3182 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/panic/unwind_safe.rs:272:9 [INFO] [stdout] 36: 0x637f5bc6a85a - std::panicking::try::do_call::h64009ce4a7d5024a [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:587:40 [INFO] [stdout] 37: 0x637f5bc6a85a - std::panicking::try::h9f253851f45b6cf2 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panicking.rs:550:19 [INFO] [stdout] 38: 0x637f5bc6a85a - std::panic::catch_unwind::hbcdf318df191e0d2 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/panic.rs:358:14 [INFO] [stdout] 39: 0x637f5bc6a85a - std::thread::Builder::spawn_unchecked_::{{closure}}::h1b0514eb1722a9bb [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 40: 0x637f5bc6a85a - core::ops::function::FnOnce::call_once{{vtable.shim}}::h49ed8239622cf2ed [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/core/src/ops/function.rs:250:5 [INFO] [stdout] 41: 0x637f5c3bceeb - as core::ops::function::FnOnce>::call_once::h5d46408001e51da6 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/alloc/src/boxed.rs:2016:9 [INFO] [stdout] 42: 0x637f5c3bceeb - as core::ops::function::FnOnce>::call_once::hfb44b07af29285a8 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/alloc/src/boxed.rs:2016:9 [INFO] [stdout] 43: 0x637f5c3bceeb - std::sys::pal::unix::thread::Thread::new::thread_start::h3fe202b40d9df201 [INFO] [stdout] at /rustc/552a959051cebf8f88a8f558399baf733bec9ce0/library/std/src/sys/pal/unix/thread.rs:106:17 [INFO] [stdout] 44: 0x7c41e3453ac3 - [INFO] [stdout] 45: 0x7c41e34e4a04 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] poly_n::test::test_find_homopolymer_regions [INFO] [stdout] [INFO] [stdout] test result: FAILED. 24 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.17s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--lib` [INFO] running `Command { std: "docker" "inspect" "5653e43055639deff8eaea1eafa08caa227cf75ea177c2074d9a13d7f6c448f0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5653e43055639deff8eaea1eafa08caa227cf75ea177c2074d9a13d7f6c448f0", kill_on_drop: false }` [INFO] [stdout] 5653e43055639deff8eaea1eafa08caa227cf75ea177c2074d9a13d7f6c448f0