[INFO] fetching crate deepbiop-cli 0.1.16...
[INFO] checking deepbiop-cli-0.1.16 against master#e22dab387f6b4f6a87dfc54ac2f6013dddb41e68 for pr-136776-1
[INFO] extracting crate deepbiop-cli 0.1.16 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.16
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.16 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.16 on toolchain e22dab387f6b4f6a87dfc54ac2f6013dddb41e68
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e22dab387f6b4f6a87dfc54ac2f6013dddb41e68" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.16 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+e22dab387f6b4f6a87dfc54ac2f6013dddb41e68" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-fasta v0.56.0
[INFO] [stderr]   Downloaded noodles-core v0.18.0
[INFO] [stderr]   Downloaded human-panic v2.0.4
[INFO] [stderr]   Downloaded noodles-fastq v0.21.0
[INFO] [stderr]   Downloaded noodles-csi v0.51.0
[INFO] [stderr]   Downloaded gemm-c32 v0.18.2
[INFO] [stderr]   Downloaded enum-as-inner v0.6.1
[INFO] [stderr]   Downloaded malachite v0.4.22
[INFO] [stderr]   Downloaded is-macro v0.3.7
[INFO] [stderr]   Downloaded dyn-stack v0.13.2
[INFO] [stderr]   Downloaded gemm-c64 v0.18.2
[INFO] [stderr]   Downloaded os_info v3.12.0
[INFO] [stderr]   Downloaded clap-markdown v0.1.5
[INFO] [stderr]   Downloaded bon v3.8.1
[INFO] [stderr]   Downloaded clap_complete v4.5.60
[INFO] [stderr]   Downloaded bon-macros v3.8.1
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.16
[INFO] [stderr]   Downloaded numpy v0.27.0
[INFO] [stderr]   Downloaded pyo3-stub-gen v0.17.0
[INFO] [stderr]   Downloaded pulp v0.21.5
[INFO] [stderr]   Downloaded rustpython-parser v0.4.0
[INFO] [stderr]   Downloaded arrow-json v57.0.0
[INFO] [stderr]   Downloaded candle-core v0.9.2-alpha.1
[INFO] [stderr]   Downloaded malachite-q v0.4.22
[INFO] [stderr]   Downloaded arrow v57.0.0
[INFO] [stderr]   Downloaded rustpython-ast v0.4.0
[INFO] [stderr]   Downloaded zip v1.1.4
[INFO] [stderr]   Downloaded arrow-arith v57.0.0
[INFO] [stderr]   Downloaded unicode_names2 v1.3.0
[INFO] [stderr]   Downloaded arrow-ord v57.0.0
[INFO] [stderr]   Downloaded arrow-row v57.0.0
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.16
[INFO] [stderr]   Downloaded arrow-string v57.0.0
[INFO] [stderr]   Downloaded malachite-bigint v0.2.3
[INFO] [stderr]   Downloaded unic-ucd-ident v0.9.0
[INFO] [stderr]   Downloaded unicode_names2_generator v1.3.0
[INFO] [stderr]   Downloaded pyo3-stub-gen-derive v0.17.0
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.16
[INFO] [stderr]   Downloaded ug v0.5.0
[INFO] [stderr]   Downloaded lexical v7.0.5
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded gemm-f16 v0.18.2
[INFO] [stderr]   Downloaded gemm-f32 v0.18.2
[INFO] [stderr]   Downloaded sysctl v0.6.0
[INFO] [stderr]   Downloaded gemm-common v0.18.2
[INFO] [stderr]   Downloaded safetensors v0.4.5
[INFO] [stderr]   Downloaded deepbiop-core v0.1.16
[INFO] [stderr]   Downloaded target-lexicon v0.13.3
[INFO] [stderr]   Downloaded rustpython-parser-vendored v0.4.0
[INFO] [stderr]   Downloaded malachite-base v0.4.22
[INFO] [stderr]   Downloaded gemm v0.18.2
[INFO] [stderr]   Downloaded rustpython-parser-core v0.4.0
[INFO] [stderr]   Downloaded unic-emoji-char v0.9.0
[INFO] [stderr]   Downloaded noodles-bam v0.83.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.43.0
[INFO] [stderr]   Downloaded noodles-sam v0.79.0
[INFO] [stderr]   Downloaded noodles v0.101.0
[INFO] [stderr]   Downloaded dyn-stack-macros v0.1.3
[INFO] [stderr]   Downloaded reborrow v0.5.5
[INFO] [stderr]   Downloaded gemm-f64 v0.18.2
[INFO] [stderr]   Downloaded arrow-csv v57.0.0
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.16
[INFO] [stderr]   Downloaded malachite-nz v0.4.22
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+e22dab387f6b4f6a87dfc54ac2f6013dddb41e68" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3cc65b35df6667fbb6f76aeed48ddbb2817e3ae222f3ed0b608f68d5c1698e84
[INFO] running `Command { std: "docker" "start" "-a" "3cc65b35df6667fbb6f76aeed48ddbb2817e3ae222f3ed0b608f68d5c1698e84", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3cc65b35df6667fbb6f76aeed48ddbb2817e3ae222f3ed0b608f68d5c1698e84", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3cc65b35df6667fbb6f76aeed48ddbb2817e3ae222f3ed0b608f68d5c1698e84", kill_on_drop: false }`
[INFO] [stdout] 3cc65b35df6667fbb6f76aeed48ddbb2817e3ae222f3ed0b608f68d5c1698e84
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+e22dab387f6b4f6a87dfc54ac2f6013dddb41e68" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 01fd5cc57935b34454df4ba42787923238411fbe36600dd3f8de32434a117e75
[INFO] running `Command { std: "docker" "start" "-a" "01fd5cc57935b34454df4ba42787923238411fbe36600dd3f8de32434a117e75", kill_on_drop: false }`
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]     Checking hashbrown v0.16.0
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]     Checking iana-time-zone v0.1.64
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking arrow-schema v57.0.0
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling libm v0.2.15
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling syn v2.0.108
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]     Checking indexmap v2.12.0
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling pyo3-build-config v0.27.1
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]     Checking reborrow v0.5.5
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling cc v1.2.44
[INFO] [stderr]    Compiling malachite-nz v0.4.22
[INFO] [stderr]    Compiling dyn-stack-macros v0.1.3
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling winnow v0.7.13
[INFO] [stderr]    Compiling getopts v0.2.24
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]     Checking rand_core v0.9.3
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[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling flatbuffers v25.9.23
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]     Checking atoi v2.0.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]     Checking noodles-bgzf v0.43.0
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling pyo3-ffi v0.27.1
[INFO] [stderr]    Compiling pyo3-macros-backend v0.27.1
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling pyo3 v0.27.1
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]    Compiling phf v0.11.3
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]     Checking toml_datetime v0.7.3
[INFO] [stderr]     Checking serde_spanned v1.0.3
[INFO] [stderr]    Compiling rustpython-parser-vendored v0.4.0
[INFO] [stderr]    Compiling numpy v0.27.0
[INFO] [stderr]    Compiling unic-emoji-char v0.9.0
[INFO] [stderr]    Compiling unic-ucd-ident v0.9.0
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]     Checking stable_deref_trait v1.2.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling malachite-base v0.4.22
[INFO] [stderr]    Compiling phf_codegen v0.11.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking toml_writer v1.0.4
[INFO] [stderr]     Checking simdutf8 v0.1.5
[INFO] [stderr]    Compiling unicode_names2_generator v1.3.0
[INFO] [stderr]    Compiling rustpython-parser v0.4.0
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling toml_parser v1.0.4
[INFO] [stderr]    Compiling lalrpop-util v0.20.2
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking ordered-float v2.10.1
[INFO] [stderr]     Checking twox-hash v2.1.2
[INFO] [stderr]     Checking integer-encoding v3.0.4
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]     Checking rustc-hash v2.1.1
[INFO] [stderr]     Checking lz4_flex v0.11.5
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking brotli v8.0.2
[INFO] [stderr]     Checking memmap2 v0.9.9
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking itertools v0.14.0
[INFO] [stderr]     Checking thrift v0.17.0
[INFO] [stderr]    Compiling unicode_names2 v1.3.0
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking libloading v0.8.9
[INFO] [stderr]     Checking inventory v0.3.21
[INFO] [stderr]    Compiling toml_edit v0.23.7
[INFO] [stderr]     Checking maplit v1.0.2
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]     Checking linux-raw-sys v0.11.0
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking lexical v7.0.5
[INFO] [stderr]     Checking smawk v0.3.2
[INFO] [stderr]     Checking unicode-linebreak v0.1.5
[INFO] [stderr]     Checking clap_builder v4.5.51
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking object v0.37.3
[INFO] [stderr]     Checking textwrap v0.16.2
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]    Compiling proc-macro-crate v3.4.0
[INFO] [stderr]     Checking uuid v1.18.1
[INFO] [stderr]     Checking bstr v1.12.1
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking toml v0.9.8
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling darling_core v0.21.3
[INFO] [stderr]     Checking noodles-core v0.18.0
[INFO] [stderr]     Checking noodles-csi v0.51.0
[INFO] [stderr]     Checking noodles-fasta v0.56.0
[INFO] [stderr]     Checking noodles-fastq v0.21.0
[INFO] [stderr]     Checking env_filter v0.1.4
[INFO] [stderr]     Checking ctrlc v3.5.1
[INFO] [stderr]     Checking tempfile v3.23.0
[INFO] [stderr]     Checking noodles-sam v0.79.0
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]    Compiling bytemuck_derive v1.10.2
[INFO] [stderr]    Compiling zerocopy-derive v0.8.27
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling derive_more-impl v1.0.0
[INFO] [stderr]    Compiling is-macro v0.3.7
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling rustpython-parser-core v0.4.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling tracing-attributes v0.1.30
[INFO] [stderr]     Checking bytemuck v1.24.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr] error: could not compile `malachite-base` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/e22dab387f6b4f6a87dfc54ac2f6013dddb41e68/bin/rustc --crate-name malachite_base --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/malachite-base-0.4.22/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("bin_build", "clap", "getrandom", "gnuplot", "rand", "rand_chacha", "random", "sha3", "test_build", "time", "walkdir"))' -C metadata=575eacae318bc2d0 -C extra-filename=-3214a605d80ec73c --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern hashbrown=/opt/rustwide/target/debug/deps/libhashbrown-dd570d4a8f59a2d9.rmeta --extern itertools=/opt/rustwide/target/debug/deps/libitertools-0090cd0f20508b6c.rmeta --extern libm=/opt/rustwide/target/debug/deps/liblibm-16cd945f38d10569.rmeta --extern ryu=/opt/rustwide/target/debug/deps/libryu-0fc417cbd813222a.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "01fd5cc57935b34454df4ba42787923238411fbe36600dd3f8de32434a117e75", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "01fd5cc57935b34454df4ba42787923238411fbe36600dd3f8de32434a117e75", kill_on_drop: false }`
[INFO] [stdout] 01fd5cc57935b34454df4ba42787923238411fbe36600dd3f8de32434a117e75