[INFO] cloning repository https://github.com/stela2502/quantify_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/quantify_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fquantify_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fquantify_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b5b14ba0411712589877900018d199c7b590d837
[INFO] checking stela2502/quantify_bam against try#8cf44c88fc5805dc578c5c987397615b47d2e2b2 for pr-136764
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fquantify_bam" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/stela2502/quantify_bam on toolchain 8cf44c88fc5805dc578c5c987397615b47d2e2b2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8cf44c88fc5805dc578c5c987397615b47d2e2b2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/stela2502/quantify_bam
[INFO] finished tweaking git repo https://github.com/stela2502/quantify_bam
[INFO] tweaked toml for git repo https://github.com/stela2502/quantify_bam written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/stela2502/quantify_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8cf44c88fc5805dc578c5c987397615b47d2e2b2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/stela2502/Rustody`
[INFO] [stderr]     Updating git repository `https://github.com/COMBINE-lab/kmers`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] checking stela2502/quantify_bam against try#8cf44c88fc5805dc578c5c987397615b47d2e2b2 for pr-136764
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fquantify_bam" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/stela2502/quantify_bam on toolchain 8cf44c88fc5805dc578c5c987397615b47d2e2b2
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8cf44c88fc5805dc578c5c987397615b47d2e2b2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/stela2502/quantify_bam
[INFO] finished tweaking git repo https://github.com/stela2502/quantify_bam
[INFO] tweaked toml for git repo https://github.com/stela2502/quantify_bam written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/stela2502/quantify_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8cf44c88fc5805dc578c5c987397615b47d2e2b2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.10.0
[INFO] [stderr]   Downloaded noodles-fasta v0.18.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.19.0
[INFO] [stderr]   Downloaded bam v0.1.4
[INFO] [stderr]   Downloaded noodles-csi v0.13.0
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.26.0
[INFO] [stderr]   Downloaded noodles-sam v0.23.0
[INFO] [stderr]   Downloaded noodles-bam v0.26.0
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+8cf44c88fc5805dc578c5c987397615b47d2e2b2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c96cdc80646272963670bb94e616c9cb5a4d91e1b63866737b686263fc63e59f
[INFO] running `Command { std: "docker" "start" "-a" "c96cdc80646272963670bb94e616c9cb5a4d91e1b63866737b686263fc63e59f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c96cdc80646272963670bb94e616c9cb5a4d91e1b63866737b686263fc63e59f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c96cdc80646272963670bb94e616c9cb5a4d91e1b63866737b686263fc63e59f", kill_on_drop: false }`
[INFO] [stdout] c96cdc80646272963670bb94e616c9cb5a4d91e1b63866737b686263fc63e59f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+8cf44c88fc5805dc578c5c987397615b47d2e2b2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3db53d3132236dab256f1e98106ad533b789fa4ecf8ff1ca4d53e733bbee6fc0
[INFO] running `Command { std: "docker" "start" "-a" "3db53d3132236dab256f1e98106ad533b789fa4ecf8ff1ca4d53e733bbee6fc0", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling libc v0.2.169
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]    Compiling serde v1.0.217
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]     Checking bytes v1.9.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]     Checking lexical-util v0.8.5
[INFO] [stderr]     Checking miniz_oxide v0.8.3
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling cc v1.2.10
[INFO] [stderr]     Checking itoa v1.0.14
[INFO] [stderr]     Checking once_cell v1.20.2
[INFO] [stderr]     Checking noodles-core v0.10.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling serde_json v1.0.137
[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking lexical-write-integer v0.8.5
[INFO] [stderr]     Checking lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling semver v1.0.25
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling portable-atomic v1.10.0
[INFO] [stderr]     Checking ryu v1.0.18
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking crossbeam-channel v0.5.14
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking lexical-write-float v0.8.5
[INFO] [stderr]     Checking lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling camino v1.1.9
[INFO] [stderr]     Checking flate2 v1.0.35
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling ahash v0.7.8
[INFO] [stderr]     Checking crossbeam-deque v0.8.6
[INFO] [stderr]     Checking unicode-width v0.2.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking os_str_bytes v6.6.1
[INFO] [stderr]    Compiling anyhow v1.0.95
[INFO] [stderr]     Checking regex-syntax v0.8.5
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]     Checking noodles-bgzf v0.19.0
[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking console v0.15.10
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]    Compiling syn v2.0.96
[INFO] [stderr]     Checking noodles-fasta v0.18.0
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking noodles-csi v0.13.0
[INFO] [stderr]     Checking iana-time-zone v0.1.61
[INFO] [stderr]     Checking textwrap v0.16.1
[INFO] [stderr]     Checking termcolor v1.4.1
[INFO] [stderr]     Checking bit_field v0.10.2
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking noodles-sam v0.23.0
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking arrayvec v0.7.6
[INFO] [stderr]     Checking num_cpus v1.16.0
[INFO] [stderr]     Checking noodles-bgzf v0.26.0
[INFO] [stderr]     Checking glob v0.3.2
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]     Checking bam v0.1.4
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking chrono v0.4.39
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking num-bigint v0.4.6
[INFO] [stderr]     Checking num-iter v0.1.45
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking noodles-bam v0.26.0
[INFO] [stderr]     Checking regex-automata v0.4.9
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling serde_derive v1.0.217
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]     Checking num v0.4.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking indicatif v0.17.9
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]     Checking regex v1.11.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]     Checking cargo-platform v0.1.9
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking kmers v0.1.0 (https://github.com/COMBINE-lab/kmers#efe56f7b)
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking cargo_metadata v0.17.0
[INFO] [stderr]     Checking rustody v2.2.2 (https://github.com/stela2502/Rustody?branch=main2#7f693211)
[INFO] [stderr]     Checking quantify_bam v0.4.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.06s
[INFO] running `Command { std: "docker" "inspect" "3db53d3132236dab256f1e98106ad533b789fa4ecf8ff1ca4d53e733bbee6fc0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3db53d3132236dab256f1e98106ad533b789fa4ecf8ff1ca4d53e733bbee6fc0", kill_on_drop: false }`
[INFO] [stdout] 3db53d3132236dab256f1e98106ad533b789fa4ecf8ff1ca4d53e733bbee6fc0