[INFO] cloning repository https://github.com/ntBre/rdkit-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ntBre/rdkit-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fdc320774d101f4cc84f964bef9547af88f5d2c9 [INFO] checking ntBre/rdkit-rs/fdc320774d101f4cc84f964bef9547af88f5d2c9 against master#a9e7b30487235621751cc628f170c0f15fb215c4 for pr-136539 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/ntBre/rdkit-rs on toolchain a9e7b30487235621751cc628f170c0f15fb215c4 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a9e7b30487235621751cc628f170c0f15fb215c4" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] finished tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] tweaked toml for git repo https://github.com/ntBre/rdkit-rs written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/ntBre/rdkit-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a9e7b30487235621751cc628f170c0f15fb215c4" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/ntBre/rdkit-sys` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+a9e7b30487235621751cc628f170c0f15fb215c4" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 672d52820bb100601527efbeec3a95b4b2f47cd1e424b90b4df05cd19e1f083a [INFO] running `Command { std: "docker" "start" "-a" "672d52820bb100601527efbeec3a95b4b2f47cd1e424b90b4df05cd19e1f083a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "672d52820bb100601527efbeec3a95b4b2f47cd1e424b90b4df05cd19e1f083a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "672d52820bb100601527efbeec3a95b4b2f47cd1e424b90b4df05cd19e1f083a", kill_on_drop: false }` [INFO] [stdout] 672d52820bb100601527efbeec3a95b4b2f47cd1e424b90b4df05cd19e1f083a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3959728d45483eb673ba100a951a6b9f5012970368db2a9e08e0ac9b67c8a5ad" "/opt/rustwide/cargo-home/bin/cargo" "+a9e7b30487235621751cc628f170c0f15fb215c4" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 43321aaffc3b6b22510bc4d909d43d1045bc465952bd3fed4cbff86202d46cea [INFO] running `Command { std: "docker" "start" "-a" "43321aaffc3b6b22510bc4d909d43d1045bc465952bd3fed4cbff86202d46cea", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.79 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling prettyplease v0.2.16 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling libloading v0.8.3 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling serde_json v1.0.122 [INFO] [stderr] Checking itoa v1.0.10 [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea) [INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-8389fbd597782f89/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=include/shim.h [INFO] [stderr] cargo:rerun-if-changed=include/shim.cpp [INFO] [stderr] cargo:rerun-if-changed=include/Makefile [INFO] [stderr] cargo:rerun-if-changed=wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=RDROOT [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/git/checkouts/rdkit-sys-f8b7de60bf7e6bc2/dc5d75e/build.rs:15:9: [INFO] [stderr] rdkit-sys: RDROOT must be set in the environment [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x642aee8fa290 - std::backtrace_rs::backtrace::libunwind::trace::h626a8badf8c267bd [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5 [INFO] [stderr] 1: 0x642aee8fa290 - std::backtrace_rs::backtrace::trace_unsynchronized::h7f66f36294f024ce [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x642aee8fa290 - std::sys::backtrace::_print_fmt::h10761aeb47b8892e [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x642aee8fa290 - ::fmt::h79c31beba6a7c2fe [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x642aee923303 - core::fmt::rt::Argument::fmt::h5edc82cb90f5faa5 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/core/src/fmt/rt.rs:177:76 [INFO] [stderr] 5: 0x642aee923303 - core::fmt::write::hed835d0088748ccc [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/core/src/fmt/mod.rs:1449:21 [INFO] [stderr] 6: 0x642aee8f6a43 - std::io::Write::write_fmt::h4715eac8558d7115 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/io/mod.rs:1890:15 [INFO] [stderr] 7: 0x642aee8fa0e2 - std::sys::backtrace::BacktraceLock::print::h4f67c28a66c235eb [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 8: 0x642aee8fb1ef - std::panicking::default_hook::{{closure}}::h00fffb7c38fe30b0 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:298:22 [INFO] [stderr] 9: 0x642aee8fb05a - std::panicking::default_hook::h054f162ebfe7023f [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:325:9 [INFO] [stderr] 10: 0x642aee8fbc12 - std::panicking::rust_panic_with_hook::hc1e0e8729adb340b [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:831:13 [INFO] [stderr] 11: 0x642aee8fb966 - std::panicking::begin_panic_handler::{{closure}}::h0e97695e953c84e8 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:697:13 [INFO] [stderr] 12: 0x642aee8fa799 - std::sys::backtrace::__rust_end_short_backtrace::h1a8935bf67b7fa7b [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/sys/backtrace.rs:168:18 [INFO] [stderr] 13: 0x642aee8fb62d - rust_begin_unwind [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:695:5 [INFO] [stderr] 14: 0x642aee921590 - core::panicking::panic_fmt::h95839affdbfc5d63 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/core/src/panicking.rs:75:14 [INFO] [stderr] 15: 0x642aee3ba7d0 - build_script_build::main::haf85b1c9f77dcbcd [INFO] [stderr] 16: 0x642aee3b7363 - core::ops::function::FnOnce::call_once::h0ffe2d9b40f44a58 [INFO] [stderr] 17: 0x642aee3b6fd6 - std::sys::backtrace::__rust_begin_short_backtrace::h20182686f063d7dd [INFO] [stderr] 18: 0x642aee3b6fb9 - std::rt::lang_start::{{closure}}::hdfb92908af07a022 [INFO] [stderr] 19: 0x642aee8f1900 - core::ops::function::impls:: for &F>::call_once::h7a1c2cf5d4be4fd9 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/core/src/ops/function.rs:284:13 [INFO] [stderr] 20: 0x642aee8f1900 - std::panicking::try::do_call::h09d3f2c09a05b4f1 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:587:40 [INFO] [stderr] 21: 0x642aee8f1900 - std::panicking::try::h884a0b397ac3c18d [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:550:19 [INFO] [stderr] 22: 0x642aee8f1900 - std::panic::catch_unwind::h0a8701771299eda1 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panic.rs:358:14 [INFO] [stderr] 23: 0x642aee8f1900 - std::rt::lang_start_internal::{{closure}}::h28f2dba4c4762d65 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/rt.rs:168:24 [INFO] [stderr] 24: 0x642aee8f1900 - std::panicking::try::do_call::h61ab4012798bc74c [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:587:40 [INFO] [stderr] 25: 0x642aee8f1900 - std::panicking::try::h0c725e93c75ea2e9 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panicking.rs:550:19 [INFO] [stderr] 26: 0x642aee8f1900 - std::panic::catch_unwind::hd9459afb4ea5e8f7 [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/panic.rs:358:14 [INFO] [stderr] 27: 0x642aee8f1900 - std::rt::lang_start_internal::hed3d49c115269fcc [INFO] [stderr] at /rustc/a9e7b30487235621751cc628f170c0f15fb215c4/library/std/src/rt.rs:164:5 [INFO] [stderr] 28: 0x642aee3b6fa1 - std::rt::lang_start::hb374494e4f8cf3da [INFO] [stderr] 29: 0x642aee3ba815 - main [INFO] [stderr] 30: 0x767738c37d90 - [INFO] [stderr] 31: 0x767738c37e40 - __libc_start_main [INFO] [stderr] 32: 0x642aee3b6725 - _start [INFO] [stderr] 33: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "43321aaffc3b6b22510bc4d909d43d1045bc465952bd3fed4cbff86202d46cea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "43321aaffc3b6b22510bc4d909d43d1045bc465952bd3fed4cbff86202d46cea", kill_on_drop: false }` [INFO] [stdout] 43321aaffc3b6b22510bc4d909d43d1045bc465952bd3fed4cbff86202d46cea