[INFO] cloning repository https://github.com/IMTMarburg/mbf_bam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/IMTMarburg/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 22cc70bbefa50c1df11b5ee376fe6d5d2560db07 [INFO] checking IMTMarburg/mbf_bam/22cc70bbefa50c1df11b5ee376fe6d5d2560db07 against master#613bdd49978298648ed05ace086bd1ecad54b44a for pr-136458 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/IMTMarburg/mbf_bam on toolchain 613bdd49978298648ed05ace086bd1ecad54b44a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+613bdd49978298648ed05ace086bd1ecad54b44a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/IMTMarburg/mbf_bam [INFO] finished tweaking git repo https://github.com/IMTMarburg/mbf_bam [INFO] tweaked toml for git repo https://github.com/IMTMarburg/mbf_bam written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/IMTMarburg/mbf_bam already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+613bdd49978298648ed05ace086bd1ecad54b44a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded ex v0.1.3 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded ordered-float v4.4.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded rust-htslib v0.46.0 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded libc v0.2.160 [INFO] [stderr] Downloaded curl-sys v0.4.77+curl-8.10.1 [INFO] [stderr] Downloaded hts-sys v2.1.4 [INFO] [stderr] Downloaded openssl-src v300.3.2+3.3.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c80049f3b88b82089a44e0f06d0d6029d44b96b7257e55a1cd63dbc9f4c33334" "/opt/rustwide/cargo-home/bin/cargo" "+613bdd49978298648ed05ace086bd1ecad54b44a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 709d60268da26236ce0798429d38a3d68c4e8a021423f4c85391653f83e38d4e [INFO] running `Command { std: "docker" "start" "-a" "709d60268da26236ce0798429d38a3d68c4e8a021423f4c85391653f83e38d4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "709d60268da26236ce0798429d38a3d68c4e8a021423f4c85391653f83e38d4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "709d60268da26236ce0798429d38a3d68c4e8a021423f4c85391653f83e38d4e", kill_on_drop: false }` [INFO] [stdout] 709d60268da26236ce0798429d38a3d68c4e8a021423f4c85391653f83e38d4e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c80049f3b88b82089a44e0f06d0d6029d44b96b7257e55a1cd63dbc9f4c33334" "/opt/rustwide/cargo-home/bin/cargo" "+613bdd49978298648ed05ace086bd1ecad54b44a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 76c48d20ffd3d68d90895e18e1c9b363ff6fa197be665811e75a7a185f2ce519 [INFO] running `Command { std: "docker" "start" "-a" "76c48d20ffd3d68d90895e18e1c9b363ff6fa197be665811e75a7a185f2ce519", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.160 [INFO] [stderr] Compiling proc-macro2 v1.0.88 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] 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scopeguard v1.2.0 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking unicode-normalization v0.1.24 [INFO] [stderr] Compiling unicode-xid v0.2.6 [INFO] [stderr] Checking getrandom v0.2.15 [INFO] [stderr] Compiling cc v1.1.30 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking form_urlencoded v1.2.1 [INFO] [stderr] Checking crossbeam-deque v0.8.5 [INFO] [stderr] Checking object v0.36.5 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking itoa v1.0.11 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking ryu v1.0.18 [INFO] [stderr] Checking regex-automata v0.4.8 [INFO] [stderr] Checking rustc-demangle v0.1.24 [INFO] [stderr] Checking indexmap v2.6.0 [INFO] [stderr] Compiling rustix v0.38.37 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Compiling pyo3-ffi v0.20.3 [INFO] [stderr] Compiling pyo3 v0.20.3 [INFO] [stderr] Checking ordered-float v4.4.0 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking crc32fast v1.4.2 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking url v2.5.2 [INFO] [stderr] Checking linux-raw-sys v0.4.14 [INFO] [stderr] Compiling cmake v0.1.51 [INFO] [stderr] Compiling openssl-src v300.3.2+3.3.2 [INFO] [stderr] Compiling indoc v2.0.5 [INFO] [stderr] Compiling synstructure v0.12.6 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Checking bitflags v2.6.0 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking ex v0.1.3 [INFO] [stderr] Checking flate2 v1.0.34 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking fastrand v2.1.1 [INFO] [stderr] Compiling libz-sys v1.1.20 [INFO] [stderr] Compiling openssl-sys v0.9.104 [INFO] [stderr] Compiling curl-sys v0.4.77+curl-8.10.1 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking regex v1.11.0 [INFO] [stderr] Compiling hts-sys v2.1.4 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking tempfile v3.13.0 [INFO] [stderr] Checking addr2line v0.24.2 [INFO] [stderr] Compiling pyo3-macros-backend v0.20.3 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.210 [INFO] [stderr] Compiling thiserror-impl v1.0.64 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking backtrace v0.3.74 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Compiling pyo3-macros v0.20.3 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking bio v2.0.3 [INFO] [stderr] Checking rust-htslib v0.46.0 [INFO] [stderr] Checking mbf_bam v0.6.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/lib.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)] [INFO] [stdout] | ^--- [INFO] [stdout] | | [INFO] [stdout] | `Fail` is not local [INFO] [stdout] | move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError` [INFO] [stdout] 21 | pub enum BamError { [INFO] [stdout] | -------- `BamError` is not local [INFO] [stdout] | [INFO] [stdout] = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint [INFO] [stdout] = note: `#[warn(non_local_definitions)]` on by default [INFO] [stdout] = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/lib.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)] [INFO] [stdout] | ^--- [INFO] [stdout] | | [INFO] [stdout] | `Display` is not local [INFO] [stdout] | move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError` [INFO] [stdout] 21 | pub enum BamError { [INFO] [stdout] | -------- `BamError` is not local [INFO] [stdout] | [INFO] [stdout] = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint [INFO] [stdout] = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/lib.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)] [INFO] [stdout] | ^--- [INFO] [stdout] | | [INFO] [stdout] | `Fail` is not local [INFO] [stdout] | move the `impl` block outside of this constant `_DERIVE_failure_Fail_FOR_BamError` [INFO] [stdout] 21 | pub enum BamError { [INFO] [stdout] | -------- `BamError` is not local [INFO] [stdout] | [INFO] [stdout] = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint [INFO] [stdout] = note: `#[warn(non_local_definitions)]` on by default [INFO] [stdout] = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: non-local `impl` definition, `impl` blocks should be written at the same level as their item [INFO] [stdout] --> src/lib.rs:20:17 [INFO] [stdout] | [INFO] [stdout] 20 | #[derive(Debug, Fail, Clone)] [INFO] [stdout] | ^--- [INFO] [stdout] | | [INFO] [stdout] | `Display` is not local [INFO] [stdout] | move the `impl` block outside of this constant `_DERIVE_failure_core_fmt_Display_FOR_BamError` [INFO] [stdout] 21 | pub enum BamError { [INFO] [stdout] | -------- `BamError` is not local [INFO] [stdout] | [INFO] [stdout] = note: the derive macro `Fail` defines the non-local `impl`, and may need to be changed [INFO] [stdout] = note: the derive macro `Fail` may come from an old version of the `failure_derive` crate, try updating your dependency with `cargo update -p failure_derive` [INFO] [stdout] = note: an `impl` is never scoped, even when it is nested inside an item, as it may impact type checking outside of that item, which can be the case if neither the trait or the self type are at the same nesting level as the `impl` [INFO] [stdout] = note: items in an anonymous const item (`const _: () = { ... }`) are treated as in the same scope as the anonymous const's declaration for the purpose of this lint [INFO] [stdout] = note: this warning originates in the derive macro `Fail` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 08s [INFO] running `Command { std: "docker" "inspect" "76c48d20ffd3d68d90895e18e1c9b363ff6fa197be665811e75a7a185f2ce519", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "76c48d20ffd3d68d90895e18e1c9b363ff6fa197be665811e75a7a185f2ce519", kill_on_drop: false }` [INFO] [stdout] 76c48d20ffd3d68d90895e18e1c9b363ff6fa197be665811e75a7a185f2ce519