[INFO] fetching crate deepbiop-core 0.1.14... [INFO] checking deepbiop-core-0.1.14 against master#cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3 for pr-135841 [INFO] extracting crate deepbiop-core 0.1.14 into /workspace/builds/worker-4-tc1/source [INFO] validating manifest of crates.io crate deepbiop-core 0.1.14 on toolchain cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate deepbiop-core 0.1.14 [INFO] finished tweaking crates.io crate deepbiop-core 0.1.14 [INFO] tweaked toml for crates.io crate deepbiop-core 0.1.14 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate crates.io crate deepbiop-core 0.1.14 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-stub-gen v0.6.2 [INFO] [stderr] Downloaded pyo3-stub-gen-derive v0.6.2 [INFO] [stderr] Downloaded numpy v0.23.0 [INFO] [stderr] Downloaded arrow-schema v54.0.0 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded noodles-fastq v0.16.0 [INFO] [stderr] Downloaded ug v0.0.2 [INFO] [stderr] Downloaded noodles-bgzf v0.34.0 [INFO] [stderr] Downloaded arrow-row v54.0.0 [INFO] [stderr] Downloaded noodles-fasta v0.46.0 [INFO] [stderr] Downloaded arrow-arith v54.0.0 [INFO] [stderr] Downloaded arrow-data v54.0.0 [INFO] [stderr] Downloaded arrow v54.0.0 [INFO] [stderr] Downloaded noodles-sam v0.68.0 [INFO] [stderr] Downloaded arrow-cast v54.0.0 [INFO] [stderr] Downloaded arrow-ipc v54.0.0 [INFO] [stderr] Downloaded noodles-bam v0.72.0 [INFO] [stderr] Downloaded bio v2.0.3 [INFO] [stderr] Downloaded arrow-buffer v54.0.0 [INFO] [stderr] Downloaded arrow-array v54.0.0 [INFO] [stderr] Downloaded candle-core v0.8.2 [INFO] [stderr] Downloaded arrow-select v54.0.0 [INFO] [stderr] Downloaded arrow-csv v54.0.0 [INFO] [stderr] Downloaded arrow-json v54.0.0 [INFO] [stderr] Downloaded arrow-ord v54.0.0 [INFO] [stderr] Downloaded arrow-string v54.0.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded lexical v7.0.4 [INFO] [stderr] Downloaded noodles-csi v0.41.0 [INFO] [stderr] Downloaded needletail v0.6.1 [INFO] [stderr] Downloaded noodles v0.87.0 [INFO] [stderr] Downloaded parquet v54.0.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c80049f3b88b82089a44e0f06d0d6029d44b96b7257e55a1cd63dbc9f4c33334" "/opt/rustwide/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 92e219f8e84b9642df88e1b8465000906ae52d96300e709ec5cf88836d0b8fb5 [INFO] running `Command { std: "docker" "start" "-a" "92e219f8e84b9642df88e1b8465000906ae52d96300e709ec5cf88836d0b8fb5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "92e219f8e84b9642df88e1b8465000906ae52d96300e709ec5cf88836d0b8fb5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "92e219f8e84b9642df88e1b8465000906ae52d96300e709ec5cf88836d0b8fb5", kill_on_drop: false }` [INFO] [stdout] 92e219f8e84b9642df88e1b8465000906ae52d96300e709ec5cf88836d0b8fb5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c80049f3b88b82089a44e0f06d0d6029d44b96b7257e55a1cd63dbc9f4c33334" "/opt/rustwide/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f7a30d344d20cb52e6d922192ee6c21727396b14ee088a34f57bc50c3e8cd694 [INFO] running `Command { std: "docker" "start" "-a" "f7a30d344d20cb52e6d922192ee6c21727396b14ee088a34f57bc50c3e8cd694", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.93 [INFO] [stderr] Compiling unicode-ident v1.0.14 [INFO] [stderr] Compiling libc v0.2.169 [INFO] [stderr] Compiling autocfg v1.4.0 [INFO] [stderr] Checking cfg-if v1.0.0 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Checking once_cell v1.20.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking hashbrown v0.15.2 [INFO] [stderr] Compiling serde v1.0.217 [INFO] [stderr] Checking bytes v1.9.0 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling version_check v0.9.5 [INFO] [stderr] Checking regex-syntax v0.8.5 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking lexical-util v1.0.6 [INFO] [stderr] Checking iana-time-zone v0.1.61 [INFO] [stderr] Checking equivalent v1.0.1 [INFO] [stderr] Checking arrow-schema v54.0.0 [INFO] [stderr] Checking indexmap v2.7.0 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] error: failed to write `/opt/rustwide/target/debug/.fingerprint/target-lexicon-d5f577a92b0e7cc3/invoked.timestamp` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error: failed to build archive at `/opt/rustwide/target/debug/deps/libpkg_config-98fee3b6192f743b.rlib`: No space left on device (os error 28) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] rustc-LLVM ERROR: IO failure on output stream: No space left on device [INFO] [stderr] rustc-LLVM ERROR: IO failure on output stream: No space left on device [INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmetaozPsmW" [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `arrow-schema` (lib) due to 1 previous error [INFO] [stderr] error: could not compile `proc-macro2` (lib) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to parse process output: `/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/bin/rustc --crate-name proc_macro2 --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.93/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "nightly", "proc-macro", "span-locations"))' -C metadata=c85d4169c35be17d -C extra-filename=-95e4d661616b1f0b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-13328ff8d6cc16fd.rmeta --cap-lints allow --cap-lints=forbid --cfg wrap_proc_macro --cfg proc_macro_span --check-cfg 'cfg(fuzzing)' --check-cfg 'cfg(no_is_available)' --check-cfg 'cfg(no_literal_byte_character)' --check-cfg 'cfg(no_literal_c_string)' --check-cfg 'cfg(no_source_text)' --check-cfg 'cfg(proc_macro_span)' --check-cfg 'cfg(procmacro2_backtrace)' --check-cfg 'cfg(procmacro2_nightly_testing)' --check-cfg 'cfg(procmacro2_semver_exempt)' --check-cfg 'cfg(randomize_layout)' --check-cfg 'cfg(span_locations)' --check-cfg 'cfg(super_unstable)' --check-cfg 'cfg(wrap_proc_macro)'` (exit status: 101) [INFO] [stderr] error: could not compile `pkg-config` (lib) due to 1 previous error [INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmetaBUtZ6H" [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `paste` (lib) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to parse process output: `/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/bin/rustc --crate-name paste --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/paste-1.0.15/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type proc-macro --emit=dep-info,link -C prefer-dynamic -C embed-bitcode=no --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values())' -C metadata=1c74c5eaee20d79f -C extra-filename=-a7d55195f43d4871 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro --cap-lints allow --cap-lints=forbid --check-cfg 'cfg(no_literal_fromstr)' --check-cfg 'cfg(feature, values("protocol_feature_paste"))'` (exit status: 101) [INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmetaBxJVBL" [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `quote` (lib) due to 1 previous error [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/bin/self-contained:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcqK9ply/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libversion_check-9366c3982144fcbd.rlib}" "/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-43b59670b7ad3fb9.rlib,libpanic_unwind-e1447e1efa6f1e57.rlib,libobject-f6963a4916fcf097.rlib,libmemchr-49a2d9af912f4524.rlib,libaddr2line-04d19aad3936869d.rlib,libgimli-483c235edb789db0.rlib,librustc_demangle-294281af50b8f748.rlib,libstd_detect-3b08295250aabc2a.rlib,libhashbrown-4472d1e05ba0dfaf.rlib,librustc_std_workspace_alloc-2ef099fac590e457.rlib,libminiz_oxide-272b52256eba70cf.rlib,libadler2-3d3fa22b868db521.rlib,libunwind-0ffda8b08e22dbea.rlib,libcfg_if-b08f62458fdd43b9.rlib,liblibc-559675126e63b890.rlib,liballoc-fcf21c8d1c9c7b75.rlib,librustc_std_workspace_core-e0b0460135bcf21d.rlib,libcore-d4097fdcbddd3bc7.rlib,libcompiler_builtins-fea484ac1eed7881.rlib}" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-B/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/build/ahash-e6e27bd24b2ea259/build_script_build-e6e27bd24b2ea259" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace. [INFO] [stdout] collect2: fatal error: ld terminated with signal 7 [Bus error], core dumped [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: couldn't create a temp dir: No space left on device (os error 28) at path "/opt/rustwide/target/debug/deps/rmetaJtuYZy" [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `crossbeam-utils` (lib) due to 1 previous error [INFO] [stderr] error: could not compile `ahash` (build script) due to 1 previous error [INFO] [stderr] error: could not compile `lexical-util` (lib) due to 1 previous error [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/bin/self-contained:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcXg9Aky/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libautocfg-edb41dba5c1eb139.rlib}" "/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-43b59670b7ad3fb9.rlib,libpanic_unwind-e1447e1efa6f1e57.rlib,libobject-f6963a4916fcf097.rlib,libmemchr-49a2d9af912f4524.rlib,libaddr2line-04d19aad3936869d.rlib,libgimli-483c235edb789db0.rlib,librustc_demangle-294281af50b8f748.rlib,libstd_detect-3b08295250aabc2a.rlib,libhashbrown-4472d1e05ba0dfaf.rlib,librustc_std_workspace_alloc-2ef099fac590e457.rlib,libminiz_oxide-272b52256eba70cf.rlib,libadler2-3d3fa22b868db521.rlib,libunwind-0ffda8b08e22dbea.rlib,libcfg_if-b08f62458fdd43b9.rlib,liblibc-559675126e63b890.rlib,liballoc-fcf21c8d1c9c7b75.rlib,librustc_std_workspace_core-e0b0460135bcf21d.rlib,libcore-d4097fdcbddd3bc7.rlib,libcompiler_builtins-fea484ac1eed7881.rlib}" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-B/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/build/num-traits-6bd7a80e6ddcde6e/build_script_build-6bd7a80e6ddcde6e" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: collect2: fatal error: ld terminated with signal 7 [Bus error], core dumped [INFO] [stdout] compilation terminated. [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `num-traits` (build script) due to 1 previous error [INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmetaz8Ecbe/lib.rmeta`: No space left on device (os error 28) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `libc` (lib) due to 1 previous error [INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmeta54WcOW/lib.rmeta`: No space left on device (os error 28) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `libc` (lib) due to 1 previous error [INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmetaV6jWTU/lib.rmeta`: No space left on device (os error 28) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `indexmap` (lib) due to 1 previous error [INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmeta3gaRlU/lib.rmeta`: No space left on device (os error 28) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `aho-corasick` (lib) due to 1 previous error [INFO] [stdout] error: failed to write to `/opt/rustwide/target/debug/deps/rmeta8RQ98G/lib.rmeta`: No space left on device (os error 28) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `regex-syntax` (lib) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "f7a30d344d20cb52e6d922192ee6c21727396b14ee088a34f57bc50c3e8cd694", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f7a30d344d20cb52e6d922192ee6c21727396b14ee088a34f57bc50c3e8cd694", kill_on_drop: false }` [INFO] [stdout] f7a30d344d20cb52e6d922192ee6c21727396b14ee088a34f57bc50c3e8cd694