[INFO] cloning repository https://github.com/noahcape/seqproc-spotcheck
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/noahcape/seqproc-spotcheck" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e7664c7ac35e42f3dde88775f06f76616dd7f772
[INFO] checking noahcape/seqproc-spotcheck against master#cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3 for pr-135841
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/noahcape/seqproc-spotcheck on toolchain cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/noahcape/seqproc-spotcheck
[INFO] finished tweaking git repo https://github.com/noahcape/seqproc-spotcheck
[INFO] tweaked toml for git repo https://github.com/noahcape/seqproc-spotcheck written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/noahcape/seqproc-spotcheck already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded clap v4.5.14
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded clap_builder v4.5.14
[INFO] [stderr]   Downloaded read-structure v0.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c80049f3b88b82089a44e0f06d0d6029d44b96b7257e55a1cd63dbc9f4c33334" "/opt/rustwide/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e859bf3e70deb9f43698446c44e7781c8a033f8b5b388870feafd9aa8c5f03d3
[INFO] running `Command { std: "docker" "start" "-a" "e859bf3e70deb9f43698446c44e7781c8a033f8b5b388870feafd9aa8c5f03d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e859bf3e70deb9f43698446c44e7781c8a033f8b5b388870feafd9aa8c5f03d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e859bf3e70deb9f43698446c44e7781c8a033f8b5b388870feafd9aa8c5f03d3", kill_on_drop: false }`
[INFO] [stdout] e859bf3e70deb9f43698446c44e7781c8a033f8b5b388870feafd9aa8c5f03d3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:c80049f3b88b82089a44e0f06d0d6029d44b96b7257e55a1cd63dbc9f4c33334" "/opt/rustwide/cargo-home/bin/cargo" "+cd805f09ffbfa3896c8f50a619de9b67e1d9f3c3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8277a0f7d9109c5d223d6686fe99661e03912c53d6bee39249751e549ddd5c93
[INFO] running `Command { std: "docker" "start" "-a" "8277a0f7d9109c5d223d6686fe99661e03912c53d6bee39249751e549ddd5c93", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling libc v0.2.155
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling serde v1.0.207
[INFO] [stderr]    Compiling paste v1.0.15
[INFO] [stderr]     Checking bytemuck v1.16.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking lazy_static v1.5.0
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[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking utf8parse v0.2.2
[INFO] [stderr]    Compiling feature-probe v0.1.1
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[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking regex-syntax v0.8.4
[INFO] [stderr]     Checking anstyle-parse v0.2.5
[INFO] [stderr]    Compiling bv v0.11.1
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[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
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[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking triple_accel v0.4.0
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[INFO] [stderr]     Checking regex-automata v0.4.7
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]     Checking regex v1.10.6
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.207
[INFO] [stderr]    Compiling thiserror-impl v1.0.63
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.5.13
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking zerocopy v0.7.35
[INFO] [stderr]     Checking clap v4.5.14
[INFO] [stderr]     Checking read-structure v0.2.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.20
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v1.6.0
[INFO] [stderr]     Checking seqproc_paper_benchmarking v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: function `write_fastqs` is never used
[INFO] [stdout]    --> src/main.rs:498:8
[INFO] [stdout]     |
[INFO] [stdout] 498 |     fn write_fastqs(outf: &mut File, records: Vec<Record>) -> Result<(), Error> {
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `exec` that must be used
[INFO] [stdout]    --> src/main.rs:394:9
[INFO] [stdout]     |
[INFO] [stdout] 394 |         Command::new("rm").arg("-r").arg("out").exec();
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 394 |         let _ = Command::new("rm").arg("-r").arg("out").exec();
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused return value of `exec` that must be used
[INFO] [stdout]    --> src/main.rs:394:9
[INFO] [stdout]     |
[INFO] [stdout] 394 |         Command::new("rm").arg("-r").arg("out").exec();
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_must_use)]` on by default
[INFO] [stdout] help: use `let _ = ...` to ignore the resulting value
[INFO] [stdout]     |
[INFO] [stdout] 394 |         let _ = Command::new("rm").arg("-r").arg("out").exec();
[INFO] [stdout]     |         +++++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 00s
[INFO] running `Command { std: "docker" "inspect" "8277a0f7d9109c5d223d6686fe99661e03912c53d6bee39249751e549ddd5c93", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8277a0f7d9109c5d223d6686fe99661e03912c53d6bee39249751e549ddd5c93", kill_on_drop: false }`
[INFO] [stdout] 8277a0f7d9109c5d223d6686fe99661e03912c53d6bee39249751e549ddd5c93