[INFO] cloning repository https://github.com/Benncs/BioMC_PostProcess
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Benncs/BioMC_PostProcess" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenncs%2FBioMC_PostProcess", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenncs%2FBioMC_PostProcess'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3609d14f79b6ebd70856a6b56617a4eb94a27936
[INFO] building Benncs/BioMC_PostProcess against try#334963c956d25708feab489a3816ae63f639355d for pr-135216
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenncs%2FBioMC_PostProcess" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Benncs/BioMC_PostProcess on toolchain 334963c956d25708feab489a3816ae63f639355d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Benncs/BioMC_PostProcess
[INFO] finished tweaking git repo https://github.com/Benncs/BioMC_PostProcess
[INFO] tweaked toml for git repo https://github.com/Benncs/BioMC_PostProcess written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Benncs/BioMC_PostProcess already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "inspect" "990073fed4a43b9537a7270ec3ab81fda2a03726059b9090cc4a16f9e07cca3d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "990073fed4a43b9537a7270ec3ab81fda2a03726059b9090cc4a16f9e07cca3d", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 683682f9279885bacfffcff0a3bdfb6fba05726e78c916c679639c9ccb75db7f
[INFO] running `Command { std: "docker" "start" "-a" "683682f9279885bacfffcff0a3bdfb6fba05726e78c916c679639c9ccb75db7f", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling shlex v1.3.0
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[INFO] [stderr]    Compiling cc v1.2.0
[INFO] [stderr]    Compiling hdf5 v0.8.1
[INFO] [stderr]    Compiling indoc v2.0.5
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[INFO] [stderr]    Compiling rustc-hash v2.1.0
[INFO] [stderr]    Compiling num-traits v0.2.19
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[INFO] [stderr]    Compiling lock_api v0.4.12
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[INFO] [stderr]    Compiling hdf5-derive v0.8.1
[INFO] [stderr]    Compiling regex v1.11.1
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[INFO] [stdout] warning: unused import: `ArrayView2`
[INFO] [stdout]  --> core/src/datamodel/_impl.rs:2:38
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::{s, Array2, ArrayView1, ArrayView2};
[INFO] [stdout]   |                                      ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> core/src/datamodel/mod.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::Result`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use hdf5::Result;
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MainFInal`, `MainInitial`, `MainRecords`, and `Misc`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:12:21
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub use main_file::{MainFInal, MainInitial, MainRecords, MainResult, Misc};
[INFO] [stdout]    |                     ^^^^^^^^^  ^^^^^^^^^^^  ^^^^^^^^^^^              ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Shape`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:13:47
[INFO] [stdout]    |
[INFO] [stdout] 13 | use ndarray::{Array2, ArrayView2, ArrayView3, Shape};
[INFO] [stdout]    |                                               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Array2` and `ArrayView3`
[INFO] [stdout]  --> core/src/process/mod.rs:1:22
[INFO] [stdout]   |
[INFO] [stdout] 1 | use ndarray::{Array1,Array2, Axis,ArrayView3,ArrayView2};
[INFO] [stdout]   |                      ^^^^^^       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `MainResult`
[INFO] [stdout]  --> core/src/lib.rs:5:62
[INFO] [stdout]   |
[INFO] [stdout] 5 | use datamodel::{vec_to_array_view2, vec_to_array_view3, Dim, MainResult, Results};
[INFO] [stdout]   |                                                              ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i_file`
[INFO] [stdout]   --> core/src/datamodel/_impl.rs:71:10
[INFO] [stdout]    |
[INFO] [stdout] 71 |     for (i_file, filename) in files.iter().enumerate() {
[INFO] [stdout]    |          ^^^^^^ help: if this is intentional, prefix it with an underscore: `_i_file`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `position`
[INFO] [stdout]   --> core/src/lib.rs:86:66
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn get_time_average_concentration(&self, species: usize, position: usize, phase: Phase) -> Result<Array1<f64>,String> {
[INFO] [stdout]    |                                                                  ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `folder`, `root`, and `dest` are never read
[INFO] [stdout]   --> core/src/lib.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct PostProcess {
[INFO] [stdout]    |            ----------- fields in this struct
[INFO] [stdout] 12 |     folder: String,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 13 |     root: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     dest: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PostProcess` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `n_node_thread` is never read
[INFO] [stdout]  --> core/src/datamodel/main_file.rs:7:9
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct Misc {
[INFO] [stdout]   |            ---- field in this struct
[INFO] [stdout] 7 |     pub n_node_thread: u64,
[INFO] [stdout]   |         ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `Misc` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub struct MainInitial {
[INFO] [stdout]    |            ----------- fields in this struct
[INFO] [stdout] 23 |     pub delta_time: f64,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 24 |     pub final_time: f64,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 25 |     pub initial_biomass_concentration: f64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 26 |     pub initial_weight: f64,
[INFO] [stdout] 27 |     pub n_map: usize,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout] 28 |     pub number_compartment: usize,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 29 |     pub number_particles: u64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 30 |     pub t_per_flow_map: f64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainInitial` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `events` and `number_particles` are never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub struct MainFInal {
[INFO] [stdout]    |            --------- fields in this struct
[INFO] [stdout] 35 |     pub events: HashMap<String, u64>,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 36 |     pub number_particles: u64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainFInal` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `cfinal` is never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:43:9
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub struct MainResult {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 43 |     pub cfinal: MainFInal,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling python_wrap v0.1.0 (/opt/rustwide/workdir/python_wrap)
[INFO] [stdout] warning: unused import: `PyString`
[INFO] [stdout]  --> python_wrap/src/lib.rs:3:27
[INFO] [stdout]   |
[INFO] [stdout] 3 | use pyo3::types::{PyList, PyString};
[INFO] [stdout]   |                           ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoPyArray` and `PyArrayLike2`
[INFO] [stdout]  --> python_wrap/src/lib.rs:4:13
[INFO] [stdout]   |
[INFO] [stdout] 4 | use numpy::{IntoPyArray, PyArray1, PyArray2, PyArrayLike2};
[INFO] [stdout]   |             ^^^^^^^^^^^                      ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `PythonPostProcess::__pymethod_get_rtd__::SIGNATURE`: this function has implicit defaults for the trailing `Option<T>` arguments 
[INFO] [stdout]          = note: these implicit defaults are being phased out 
[INFO] [stdout]          = help: add `#[pyo3(signature = (flow, step, is_str=None))]` to this function to silence this warning and keep the current behavior
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:8
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |        ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `pyo3::ToPyObject::to_object`: `ToPyObject` is going to be replaced by `IntoPyObject`. See the migration guide (https://pyo3.rs/v0.23.0/migration) for more information.
[INFO] [stdout]   --> python_wrap/src/lib.rs:79:52
[INFO] [stdout]    |
[INFO] [stdout] 79 |         Python::with_gil(|py| Ok(PyList::empty(py).to_object(py)))
[INFO] [stdout]    |                                                    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name`
[INFO] [stdout]   --> python_wrap/src/lib.rs:77:36
[INFO] [stdout]    |
[INFO] [stdout] 77 |     fn get_spatial_property(&self, name: &str) -> PyResult<PyObject> {
[INFO] [stdout]    |                                    ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `flow`
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:23
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |                       ^^^^ help: if this is intentional, prefix it with an underscore: `_flow`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `step`
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:34
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |                                  ^^^^ help: if this is intentional, prefix it with an underscore: `_step`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `is_str`
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:45
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |                                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 46s
[INFO] running `Command { std: "docker" "inspect" "683682f9279885bacfffcff0a3bdfb6fba05726e78c916c679639c9ccb75db7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "683682f9279885bacfffcff0a3bdfb6fba05726e78c916c679639c9ccb75db7f", kill_on_drop: false }`
[INFO] [stdout] 683682f9279885bacfffcff0a3bdfb6fba05726e78c916c679639c9ccb75db7f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c70cee88abba5345442b1cbafbd0fd00f9a0155f613929835f8f0fa645127983
[INFO] running `Command { std: "docker" "start" "-a" "c70cee88abba5345442b1cbafbd0fd00f9a0155f613929835f8f0fa645127983", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `ArrayView2`
[INFO] [stdout]  --> core/src/datamodel/_impl.rs:2:38
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::{s, Array2, ArrayView1, ArrayView2};
[INFO] [stdout]   |                                      ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> core/src/datamodel/mod.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::Result`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use hdf5::Result;
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MainFInal`, `MainInitial`, `MainRecords`, and `Misc`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:12:21
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub use main_file::{MainFInal, MainInitial, MainRecords, MainResult, Misc};
[INFO] [stdout]    |                     ^^^^^^^^^  ^^^^^^^^^^^  ^^^^^^^^^^^              ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Shape`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:13:47
[INFO] [stdout]    |
[INFO] [stdout] 13 | use ndarray::{Array2, ArrayView2, ArrayView3, Shape};
[INFO] [stdout]    |                                               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Array2` and `ArrayView3`
[INFO] [stdout]  --> core/src/process/mod.rs:1:22
[INFO] [stdout]   |
[INFO] [stdout] 1 | use ndarray::{Array1,Array2, Axis,ArrayView3,ArrayView2};
[INFO] [stdout]   |                      ^^^^^^       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `MainResult`
[INFO] [stdout]  --> core/src/lib.rs:5:62
[INFO] [stdout]   |
[INFO] [stdout] 5 | use datamodel::{vec_to_array_view2, vec_to_array_view3, Dim, MainResult, Results};
[INFO] [stdout]   |                                                              ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i_file`
[INFO] [stdout]   --> core/src/datamodel/_impl.rs:71:10
[INFO] [stdout]    |
[INFO] [stdout] 71 |     for (i_file, filename) in files.iter().enumerate() {
[INFO] [stdout]    |          ^^^^^^ help: if this is intentional, prefix it with an underscore: `_i_file`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `position`
[INFO] [stdout]   --> core/src/lib.rs:86:66
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn get_time_average_concentration(&self, species: usize, position: usize, phase: Phase) -> Result<Array1<f64>,String> {
[INFO] [stdout]    |                                                                  ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `folder`, `root`, and `dest` are never read
[INFO] [stdout]   --> core/src/lib.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct PostProcess {
[INFO] [stdout]    |            ----------- fields in this struct
[INFO] [stdout] 12 |     folder: String,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 13 |     root: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     dest: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PostProcess` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `n_node_thread` is never read
[INFO] [stdout]  --> core/src/datamodel/main_file.rs:7:9
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct Misc {
[INFO] [stdout]   |            ---- field in this struct
[INFO] [stdout] 7 |     pub n_node_thread: u64,
[INFO] [stdout]   |         ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `Misc` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub struct MainInitial {
[INFO] [stdout]    |            ----------- fields in this struct
[INFO] [stdout] 23 |     pub delta_time: f64,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 24 |     pub final_time: f64,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 25 |     pub initial_biomass_concentration: f64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 26 |     pub initial_weight: f64,
[INFO] [stdout] 27 |     pub n_map: usize,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout] 28 |     pub number_compartment: usize,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 29 |     pub number_particles: u64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 30 |     pub t_per_flow_map: f64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainInitial` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `events` and `number_particles` are never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub struct MainFInal {
[INFO] [stdout]    |            --------- fields in this struct
[INFO] [stdout] 35 |     pub events: HashMap<String, u64>,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 36 |     pub number_particles: u64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainFInal` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `cfinal` is never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:43:9
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub struct MainResult {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 43 |     pub cfinal: MainFInal,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bcore v0.1.0 (/opt/rustwide/workdir/core)
[INFO] [stderr]    Compiling examples v0.1.0 (/opt/rustwide/workdir/examples)
[INFO] [stderr]    Compiling python_wrap v0.1.0 (/opt/rustwide/workdir/python_wrap)
[INFO] [stdout] warning: unused import: `ArrayView2`
[INFO] [stdout]  --> core/src/datamodel/_impl.rs:2:38
[INFO] [stdout]   |
[INFO] [stdout] 2 | use ndarray::{s, Array2, ArrayView1, ArrayView2};
[INFO] [stdout]   |                                      ^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> core/src/datamodel/mod.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `hdf5::Result`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:11:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | use hdf5::Result;
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `MainFInal`, `MainInitial`, `MainRecords`, and `Misc`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:12:21
[INFO] [stdout]    |
[INFO] [stdout] 12 | pub use main_file::{MainFInal, MainInitial, MainRecords, MainResult, Misc};
[INFO] [stdout]    |                     ^^^^^^^^^  ^^^^^^^^^^^  ^^^^^^^^^^^              ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Shape`
[INFO] [stdout]   --> core/src/datamodel/mod.rs:13:47
[INFO] [stdout]    |
[INFO] [stdout] 13 | use ndarray::{Array2, ArrayView2, ArrayView3, Shape};
[INFO] [stdout]    |                                               ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Array2` and `ArrayView3`
[INFO] [stdout]  --> core/src/process/mod.rs:1:22
[INFO] [stdout]   |
[INFO] [stdout] 1 | use ndarray::{Array1,Array2, Axis,ArrayView3,ArrayView2};
[INFO] [stdout]   |                      ^^^^^^       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `MainResult`
[INFO] [stdout]  --> core/src/lib.rs:5:62
[INFO] [stdout]   |
[INFO] [stdout] 5 | use datamodel::{vec_to_array_view2, vec_to_array_view3, Dim, MainResult, Results};
[INFO] [stdout]   |                                                              ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PyString`
[INFO] [stdout]  --> python_wrap/src/lib.rs:3:27
[INFO] [stdout]   |
[INFO] [stdout] 3 | use pyo3::types::{PyList, PyString};
[INFO] [stdout]   |                           ^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `IntoPyArray` and `PyArrayLike2`
[INFO] [stdout]  --> python_wrap/src/lib.rs:4:13
[INFO] [stdout]   |
[INFO] [stdout] 4 | use numpy::{IntoPyArray, PyArray1, PyArray2, PyArrayLike2};
[INFO] [stdout]   |             ^^^^^^^^^^^                      ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `PythonPostProcess::__pymethod_get_rtd__::SIGNATURE`: this function has implicit defaults for the trailing `Option<T>` arguments 
[INFO] [stdout]          = note: these implicit defaults are being phased out 
[INFO] [stdout]          = help: add `#[pyo3(signature = (flow, step, is_str=None))]` to this function to silence this warning and keep the current behavior
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:8
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |        ^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i_file`
[INFO] [stdout]   --> core/src/datamodel/_impl.rs:71:10
[INFO] [stdout]    |
[INFO] [stdout] 71 |     for (i_file, filename) in files.iter().enumerate() {
[INFO] [stdout]    |          ^^^^^^ help: if this is intentional, prefix it with an underscore: `_i_file`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `position`
[INFO] [stdout]   --> core/src/lib.rs:86:66
[INFO] [stdout]    |
[INFO] [stdout] 86 |     pub fn get_time_average_concentration(&self, species: usize, position: usize, phase: Phase) -> Result<Array1<f64>,String> {
[INFO] [stdout]    |                                                                  ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `folder`, `root`, and `dest` are never read
[INFO] [stdout]   --> core/src/lib.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 11 | pub struct PostProcess {
[INFO] [stdout]    |            ----------- fields in this struct
[INFO] [stdout] 12 |     folder: String,
[INFO] [stdout]    |     ^^^^^^
[INFO] [stdout] 13 |     root: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 14 |     dest: String,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PostProcess` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `n_node_thread` is never read
[INFO] [stdout]  --> core/src/datamodel/main_file.rs:7:9
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub struct Misc {
[INFO] [stdout]   |            ---- field in this struct
[INFO] [stdout] 7 |     pub n_node_thread: u64,
[INFO] [stdout]   |         ^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `Misc` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: multiple fields are never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:23:9
[INFO] [stdout]    |
[INFO] [stdout] 22 | pub struct MainInitial {
[INFO] [stdout]    |            ----------- fields in this struct
[INFO] [stdout] 23 |     pub delta_time: f64,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 24 |     pub final_time: f64,
[INFO] [stdout]    |         ^^^^^^^^^^
[INFO] [stdout] 25 |     pub initial_biomass_concentration: f64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 26 |     pub initial_weight: f64,
[INFO] [stdout] 27 |     pub n_map: usize,
[INFO] [stdout]    |         ^^^^^
[INFO] [stdout] 28 |     pub number_compartment: usize,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 29 |     pub number_particles: u64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout] 30 |     pub t_per_flow_map: f64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainInitial` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `events` and `number_particles` are never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:35:9
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub struct MainFInal {
[INFO] [stdout]    |            --------- fields in this struct
[INFO] [stdout] 35 |     pub events: HashMap<String, u64>,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 36 |     pub number_particles: u64,
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainFInal` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `cfinal` is never read
[INFO] [stdout]   --> core/src/datamodel/main_file.rs:43:9
[INFO] [stdout]    |
[INFO] [stdout] 40 | pub struct MainResult {
[INFO] [stdout]    |            ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 43 |     pub cfinal: MainFInal,
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `MainResult` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated method `pyo3::ToPyObject::to_object`: `ToPyObject` is going to be replaced by `IntoPyObject`. See the migration guide (https://pyo3.rs/v0.23.0/migration) for more information.
[INFO] [stdout]   --> python_wrap/src/lib.rs:79:52
[INFO] [stdout]    |
[INFO] [stdout] 79 |         Python::with_gil(|py| Ok(PyList::empty(py).to_object(py)))
[INFO] [stdout]    |                                                    ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name`
[INFO] [stdout]   --> python_wrap/src/lib.rs:77:36
[INFO] [stdout]    |
[INFO] [stdout] 77 |     fn get_spatial_property(&self, name: &str) -> PyResult<PyObject> {
[INFO] [stdout]    |                                    ^^^^ help: if this is intentional, prefix it with an underscore: `_name`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `flow`
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:23
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |                       ^^^^ help: if this is intentional, prefix it with an underscore: `_flow`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `step`
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:34
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |                                  ^^^^ help: if this is intentional, prefix it with an underscore: `_step`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `is_str`
[INFO] [stdout]    --> python_wrap/src/lib.rs:105:45
[INFO] [stdout]     |
[INFO] [stdout] 105 |     fn get_rtd(&self, flow: f64, step: f64, is_str: Option<bool>) -> PyResult<PyObject> {
[INFO] [stdout]     |                                             ^^^^^^ help: if this is intentional, prefix it with an underscore: `_is_str`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.66s
[INFO] running `Command { std: "docker" "inspect" "c70cee88abba5345442b1cbafbd0fd00f9a0155f613929835f8f0fa645127983", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c70cee88abba5345442b1cbafbd0fd00f9a0155f613929835f8f0fa645127983", kill_on_drop: false }`
[INFO] [stdout] c70cee88abba5345442b1cbafbd0fd00f9a0155f613929835f8f0fa645127983
