[INFO] cloning repository https://github.com/Benjamin-Lee/circkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Benjamin-Lee/circkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f3ea92a81104619b1d4f93dc836c1a4977a4d128
[INFO] building Benjamin-Lee/circkit against master#ad211ced81509462cdfe4c29ed10f97279a0acae for pr-135216
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Benjamin-Lee/circkit on toolchain ad211ced81509462cdfe4c29ed10f97279a0acae
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Benjamin-Lee/circkit
[INFO] finished tweaking git repo https://github.com/Benjamin-Lee/circkit
[INFO] tweaked toml for git repo https://github.com/Benjamin-Lee/circkit written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Benjamin-Lee/circkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 886b292f9464f4f1d9a395b5c40d48c8a06eb7879887739bcca97ff6dcf1708d
[INFO] running `Command { std: "docker" "start" "-a" "886b292f9464f4f1d9a395b5c40d48c8a06eb7879887739bcca97ff6dcf1708d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "886b292f9464f4f1d9a395b5c40d48c8a06eb7879887739bcca97ff6dcf1708d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "886b292f9464f4f1d9a395b5c40d48c8a06eb7879887739bcca97ff6dcf1708d", kill_on_drop: false }`
[INFO] [stdout] 886b292f9464f4f1d9a395b5c40d48c8a06eb7879887739bcca97ff6dcf1708d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9fb004d2e289170399bb0b928b60539e192e39ffd6f6bc5d682d820571d7f4d1
[INFO] running `Command { std: "docker" "start" "-a" "9fb004d2e289170399bb0b928b60539e192e39ffd6f6bc5d682d820571d7f4d1", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.141
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[INFO] [stderr]    Compiling num_cpus v1.15.0
[INFO] [stderr]    Compiling xxhash-rust v0.8.6
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[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling clap-verbosity-flag v1.0.1
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[INFO] [stderr]    Compiling zstd v0.12.3+zstd.1.5.2
[INFO] [stderr]    Compiling niffler v2.5.0
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.3.1
[INFO] [stderr]    Compiling circkit v0.1.0 (/opt/rustwide/workdir/lib)
[INFO] [stderr]    Compiling circkit-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 |     setup_panic!();
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]    = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 |     setup_panic!();
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 18s
[INFO] running `Command { std: "docker" "inspect" "9fb004d2e289170399bb0b928b60539e192e39ffd6f6bc5d682d820571d7f4d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9fb004d2e289170399bb0b928b60539e192e39ffd6f6bc5d682d820571d7f4d1", kill_on_drop: false }`
[INFO] [stdout] 9fb004d2e289170399bb0b928b60539e192e39ffd6f6bc5d682d820571d7f4d1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a707c9dd344e09d92e2a1370e0c0474bb472bfc09cbe77706a1702ce0c2f2cca
[INFO] running `Command { std: "docker" "start" "-a" "a707c9dd344e09d92e2a1370e0c0474bb472bfc09cbe77706a1702ce0c2f2cca", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling syn v2.0.28
[INFO] [stderr]    Compiling rustix v0.37.12
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[INFO] [stderr]    Compiling bstr v1.4.0
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling predicates-core v1.0.6
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]    Compiling pin-project-lite v0.2.9
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[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling bio-types v1.0.0
[INFO] [stderr]    Compiling futures-executor v0.3.28
[INFO] [stderr]    Compiling darling_macro v0.14.4
[INFO] [stderr]    Compiling futures v0.3.28
[INFO] [stderr]    Compiling darling v0.14.4
[INFO] [stderr]    Compiling derive_builder_core v0.11.2
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]    Compiling rstest v0.15.0
[INFO] [stderr]    Compiling derive_builder_macro v0.11.2
[INFO] [stderr]    Compiling derive_builder v0.11.2
[INFO] [stderr]    Compiling clap-verbosity-flag v1.0.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.3.1
[INFO] [stderr]    Compiling circkit v0.1.0 (/opt/rustwide/workdir/lib)
[INFO] [stderr]    Compiling circkit-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 |     setup_panic!();
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]    = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 |     setup_panic!();
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]    = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 |     setup_panic!();
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated type alias `std::panic::PanicInfo`: use `PanicHookInfo` instead
[INFO] [stdout]   --> src/main.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 |     setup_panic!();
[INFO] [stdout]    |     ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `$crate::setup_panic` which comes from the expansion of the macro `setup_panic` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `check_fasta` is never used
[INFO] [stdout]  --> tests/common.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn check_fasta(directory: &str, cmd: &mut Command) -> anyhow::Result<()> {
[INFO] [stdout]   |        ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `check_fasta` is never used
[INFO] [stdout]  --> tests/common.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn check_fasta(directory: &str, cmd: &mut Command) -> anyhow::Result<()> {
[INFO] [stdout]   |        ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 10s
[INFO] running `Command { std: "docker" "inspect" "a707c9dd344e09d92e2a1370e0c0474bb472bfc09cbe77706a1702ce0c2f2cca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a707c9dd344e09d92e2a1370e0c0474bb472bfc09cbe77706a1702ce0c2f2cca", kill_on_drop: false }`
[INFO] [stdout] a707c9dd344e09d92e2a1370e0c0474bb472bfc09cbe77706a1702ce0c2f2cca
