[INFO] cloning repository https://github.com/Addimator/deamination
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Addimator/deamination" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAddimator%2Fdeamination", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAddimator%2Fdeamination'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 435e81f7e4dc6d89932a8f19c7b1cf4bc0a4e80f
[INFO] building Addimator/deamination against master#ad211ced81509462cdfe4c29ed10f97279a0acae for pr-135216
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAddimator%2Fdeamination" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Addimator/deamination on toolchain ad211ced81509462cdfe4c29ed10f97279a0acae
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Addimator/deamination
[INFO] finished tweaking git repo https://github.com/Addimator/deamination
[INFO] tweaked toml for git repo https://github.com/Addimator/deamination written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Addimator/deamination already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded thiserror-impl v1.0.50
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded thiserror v1.0.50
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded anyhow v1.0.75
[INFO] [stderr]   Downloaded rust-htslib v0.43.1
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded openssl-sys v0.9.94
[INFO] [stderr]   Downloaded libz-sys v1.1.12
[INFO] [stderr]   Downloaded curl-sys v0.4.68+curl-8.4.0
[INFO] [stderr]   Downloaded hts-sys v2.1.1
[INFO] [stderr]   Downloaded openssl-src v300.1.6+3.1.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 5c86cc33de16da80d1bb3155211e888c8418f85d8a0adfa2464a58752d81a1c7
[INFO] running `Command { std: "docker" "start" "-a" "5c86cc33de16da80d1bb3155211e888c8418f85d8a0adfa2464a58752d81a1c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5c86cc33de16da80d1bb3155211e888c8418f85d8a0adfa2464a58752d81a1c7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5c86cc33de16da80d1bb3155211e888c8418f85d8a0adfa2464a58752d81a1c7", kill_on_drop: false }`
[INFO] [stdout] 5c86cc33de16da80d1bb3155211e888c8418f85d8a0adfa2464a58752d81a1c7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 65a66aa9e28c7ef64bae619be3cb5c24ddfb74e4f743a6590bb3cd0ed45ff420
[INFO] running `Command { std: "docker" "start" "-a" "65a66aa9e28c7ef64bae619be3cb5c24ddfb74e4f743a6590bb3cd0ed45ff420", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.149
[INFO] [stderr]    Compiling proc-macro2 v1.0.69
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling memchr v2.6.4
[INFO] [stderr]    Compiling thiserror v1.0.50
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling unicode-segmentation v1.10.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling tinyvec v1.6.0
[INFO] [stderr]    Compiling unicode-bidi v0.3.13
[INFO] [stderr]    Compiling unicode-width v0.1.11
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling percent-encoding v2.3.0
[INFO] [stderr]    Compiling form_urlencoded v1.2.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling anyhow v1.0.75
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v1.1.2
[INFO] [stderr]    Compiling quote v1.0.33
[INFO] [stderr]    Compiling jobserver v0.1.27
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling syn v2.0.38
[INFO] [stderr]    Compiling unicode-normalization v0.1.22
[INFO] [stderr]    Compiling cc v1.0.83
[INFO] [stderr]    Compiling idna v0.4.0
[INFO] [stderr]    Compiling openssl-src v300.1.6+3.1.4
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling url v2.4.1
[INFO] [stderr]    Compiling openssl-sys v0.9.94
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.68+curl-8.4.0
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.12
[INFO] [stderr]    Compiling regex-automata v0.4.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling thiserror-impl v1.0.50
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling regex v1.10.2
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling rust-htslib v0.43.1
[INFO] [stderr]    Compiling deamination v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: irrefutable `if let` pattern
[INFO] [stdout]   --> src/find_bases.rs:33:20
[INFO] [stdout]    |
[INFO] [stdout] 33 |                 if let Ok(chrom) = fields[0].parse::<String>() {
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this pattern will always match, so the `if let` is useless
[INFO] [stdout]    = help: consider replacing the `if let` with a `let`
[INFO] [stdout]    = note: `#[warn(irrefutable_let_patterns)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: irrefutable `if let` pattern
[INFO] [stdout]   --> src/find_bases.rs:33:20
[INFO] [stdout]    |
[INFO] [stdout] 33 |                 if let Ok(chrom) = fields[0].parse::<String>() {
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this pattern will always match, so the `if let` is useless
[INFO] [stdout]    = help: consider replacing the `if let` with a `let`
[INFO] [stdout]    = note: `#[warn(irrefutable_let_patterns)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 10s
[INFO] running `Command { std: "docker" "inspect" "65a66aa9e28c7ef64bae619be3cb5c24ddfb74e4f743a6590bb3cd0ed45ff420", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "65a66aa9e28c7ef64bae619be3cb5c24ddfb74e4f743a6590bb3cd0ed45ff420", kill_on_drop: false }`
[INFO] [stdout] 65a66aa9e28c7ef64bae619be3cb5c24ddfb74e4f743a6590bb3cd0ed45ff420
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 00673a354843a14065e1a70878d1e1836fc4da1e7e9fcbb26f406d5b18afc006
[INFO] running `Command { std: "docker" "start" "-a" "00673a354843a14065e1a70878d1e1836fc4da1e7e9fcbb26f406d5b18afc006", kill_on_drop: false }`
[INFO] [stderr]    Compiling deamination v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: irrefutable `if let` pattern
[INFO] [stdout]   --> src/find_bases.rs:33:20
[INFO] [stdout]    |
[INFO] [stdout] 33 |                 if let Ok(chrom) = fields[0].parse::<String>() {
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this pattern will always match, so the `if let` is useless
[INFO] [stdout]    = help: consider replacing the `if let` with a `let`
[INFO] [stdout]    = note: `#[warn(irrefutable_let_patterns)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: irrefutable `if let` pattern
[INFO] [stdout]   --> src/find_bases.rs:33:20
[INFO] [stdout]    |
[INFO] [stdout] 33 |                 if let Ok(chrom) = fields[0].parse::<String>() {
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this pattern will always match, so the `if let` is useless
[INFO] [stdout]    = help: consider replacing the `if let` with a `let`
[INFO] [stdout]    = note: `#[warn(irrefutable_let_patterns)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: irrefutable `if let` pattern
[INFO] [stdout]   --> src/find_bases.rs:33:20
[INFO] [stdout]    |
[INFO] [stdout] 33 |                 if let Ok(chrom) = fields[0].parse::<String>() {
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this pattern will always match, so the `if let` is useless
[INFO] [stdout]    = help: consider replacing the `if let` with a `let`
[INFO] [stdout]    = note: `#[warn(irrefutable_let_patterns)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: irrefutable `if let` pattern
[INFO] [stdout]   --> src/find_bases.rs:33:20
[INFO] [stdout]    |
[INFO] [stdout] 33 |                 if let Ok(chrom) = fields[0].parse::<String>() {
[INFO] [stdout]    |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this pattern will always match, so the `if let` is useless
[INFO] [stdout]    = help: consider replacing the `if let` with a `let`
[INFO] [stdout]    = note: `#[warn(irrefutable_let_patterns)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.02s
[INFO] running `Command { std: "docker" "inspect" "00673a354843a14065e1a70878d1e1836fc4da1e7e9fcbb26f406d5b18afc006", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "00673a354843a14065e1a70878d1e1836fc4da1e7e9fcbb26f406d5b18afc006", kill_on_drop: false }`
[INFO] [stdout] 00673a354843a14065e1a70878d1e1836fc4da1e7e9fcbb26f406d5b18afc006
