[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] de5c893f6232b62240d5e0b11582eda25af856ab
[INFO] building ARU-life-sciences/extract_nhmmer_tblout against master#ad211ced81509462cdfe4c29ed10f97279a0acae for pr-135216
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain ad211ced81509462cdfe4c29ed10f97279a0acae
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded bitflags v2.5.0
[INFO] [stderr]   Downloaded noodles-fasta v0.37.0
[INFO] [stderr]   Downloaded anstyle-query v1.0.3
[INFO] [stderr]   Downloaded noodles-bgzf v0.29.0
[INFO] [stderr]   Downloaded proc-macro2 v1.0.82
[INFO] [stderr]   Downloaded serde v1.0.201
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.12
[INFO] [stderr]   Downloaded serde_derive v1.0.201
[INFO] [stderr]   Downloaded hmm_tblout v0.2.1
[INFO] [stderr]   Downloaded crc32fast v1.4.0
[INFO] [stderr]   Downloaded syn v2.0.61
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded libc v0.2.154
[INFO] [stderr]   Downloaded linux-raw-sys v0.4.13
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ef578d9eed8d5bbec2b40d73f0cfcffb90cc75b1a92998127c0ed07b61cd1feb
[INFO] running `Command { std: "docker" "start" "-a" "ef578d9eed8d5bbec2b40d73f0cfcffb90cc75b1a92998127c0ed07b61cd1feb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ef578d9eed8d5bbec2b40d73f0cfcffb90cc75b1a92998127c0ed07b61cd1feb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef578d9eed8d5bbec2b40d73f0cfcffb90cc75b1a92998127c0ed07b61cd1feb", kill_on_drop: false }`
[INFO] [stdout] ef578d9eed8d5bbec2b40d73f0cfcffb90cc75b1a92998127c0ed07b61cd1feb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5bdafff0d672d0a56d128811db797fe16ce6feb0521a4564321287930c1c6b8a
[INFO] running `Command { std: "docker" "start" "-a" "5bdafff0d672d0a56d128811db797fe16ce6feb0521a4564321287930c1c6b8a", kill_on_drop: false }`
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling anstyle v1.0.7
[INFO] [stderr]    Compiling colorchoice v1.0.1
[INFO] [stderr]    Compiling anstyle-query v1.0.3
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling miniz_oxide v0.7.2
[INFO] [stderr]    Compiling bytes v1.6.0
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling anstyle-parse v0.2.4
[INFO] [stderr]    Compiling fastrand v2.1.0
[INFO] [stderr]    Compiling hmm_tblout v0.2.1
[INFO] [stderr]    Compiling anstream v0.6.14
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-bgzf v0.29.0
[INFO] [stderr]    Compiling noodles-fasta v0.37.0
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling extract_nhmmer_tblout v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6.22s
[INFO] running `Command { std: "docker" "inspect" "5bdafff0d672d0a56d128811db797fe16ce6feb0521a4564321287930c1c6b8a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5bdafff0d672d0a56d128811db797fe16ce6feb0521a4564321287930c1c6b8a", kill_on_drop: false }`
[INFO] [stdout] 5bdafff0d672d0a56d128811db797fe16ce6feb0521a4564321287930c1c6b8a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 199689fa6555aaf05aed778bb569fbcc17224c37f52b5b2699655c1049300fc8
[INFO] running `Command { std: "docker" "start" "-a" "199689fa6555aaf05aed778bb569fbcc17224c37f52b5b2699655c1049300fc8", kill_on_drop: false }`
[INFO] [stderr]    Compiling extract_nhmmer_tblout v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.55s
[INFO] running `Command { std: "docker" "inspect" "199689fa6555aaf05aed778bb569fbcc17224c37f52b5b2699655c1049300fc8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "199689fa6555aaf05aed778bb569fbcc17224c37f52b5b2699655c1049300fc8", kill_on_drop: false }`
[INFO] [stdout] 199689fa6555aaf05aed778bb569fbcc17224c37f52b5b2699655c1049300fc8
