[INFO] cloning repository https://github.com/Dfam-consortium/tss_prefilter
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Dfam-consortium/tss_prefilter" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDfam-consortium%2Ftss_prefilter", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDfam-consortium%2Ftss_prefilter'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 06eba9b0acca4e9dc5776165f9f0fea3005cc539
[INFO] building Dfam-consortium/tss_prefilter against try#334963c956d25708feab489a3816ae63f639355d for pr-135216
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDfam-consortium%2Ftss_prefilter" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Dfam-consortium/tss_prefilter on toolchain 334963c956d25708feab489a3816ae63f639355d
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Dfam-consortium/tss_prefilter
[INFO] finished tweaking git repo https://github.com/Dfam-consortium/tss_prefilter
[INFO] tweaked toml for git repo https://github.com/Dfam-consortium/tss_prefilter written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Dfam-consortium/tss_prefilter already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 72a02e75e1dd087380e3d8d9b316f627a0c26514b007385121dfa6bc63d01271
[INFO] running `Command { std: "docker" "start" "-a" "72a02e75e1dd087380e3d8d9b316f627a0c26514b007385121dfa6bc63d01271", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "72a02e75e1dd087380e3d8d9b316f627a0c26514b007385121dfa6bc63d01271", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "72a02e75e1dd087380e3d8d9b316f627a0c26514b007385121dfa6bc63d01271", kill_on_drop: false }`
[INFO] [stdout] 72a02e75e1dd087380e3d8d9b316f627a0c26514b007385121dfa6bc63d01271
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+334963c956d25708feab489a3816ae63f639355d" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4cfda7ab5ea3743c3b03dcf6467c35ccefe3b2941fd1999ba9f1bcb0e936bac5
[INFO] running `Command { std: "docker" "start" "-a" "4cfda7ab5ea3743c3b03dcf6467c35ccefe3b2941fd1999ba9f1bcb0e936bac5", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.82
[INFO] [stderr]    Compiling libc v0.2.154
[INFO] [stderr]    Compiling utf8parse v0.2.1
[INFO] [stderr]    Compiling anstyle-query v1.0.3
[INFO] [stderr]    Compiling faiss-sys v0.6.2
[INFO] [stderr]    Compiling serde v1.0.201
[INFO] [stderr]    Compiling anstyle v1.0.7
[INFO] [stderr]    Compiling colorchoice v1.0.1
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.0
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.4
[INFO] [stderr]    Compiling clap_lex v0.6.0
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling anstream v0.6.14
[INFO] [stderr]    Compiling faiss v0.12.1
[INFO] [stderr]    Compiling clap_builder v4.4.11
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling syn v2.0.63
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling clap_derive v4.4.7
[INFO] [stderr]    Compiling clap v4.4.11
[INFO] [stderr]    Compiling tss_prefilter v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around `if` condition
[INFO] [stdout]    --> src/main.rs:455:12
[INFO] [stdout]     |
[INFO] [stdout] 455 |         if ( use_cosine_similarity == 1 ) {
[INFO] [stdout]     |            ^^                          ^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 455 -         if ( use_cosine_similarity == 1 ) {
[INFO] [stdout] 455 +         if use_cosine_similarity == 1 {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around `if` condition
[INFO] [stdout]    --> src/main.rs:467:12
[INFO] [stdout]     |
[INFO] [stdout] 467 |         if ( use_cosine_similarity == 1 ) {
[INFO] [stdout]     |            ^^                          ^^
[INFO] [stdout]     |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 467 -         if ( use_cosine_similarity == 1 ) {
[INFO] [stdout] 467 +         if use_cosine_similarity == 1 {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around `if` condition
[INFO] [stdout]    --> src/main.rs:559:12
[INFO] [stdout]     |
[INFO] [stdout] 559 |         if ( use_cosine_similarity == 1 ) {
[INFO] [stdout]     |            ^^                          ^^
[INFO] [stdout]     |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 559 -         if ( use_cosine_similarity == 1 ) {
[INFO] [stdout] 559 +         if use_cosine_similarity == 1 {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `k`
[INFO] [stdout]    --> src/tensor_sketch.rs:143:25
[INFO] [stdout]     |
[INFO] [stdout] 143 |                     for k in 0..j {
[INFO] [stdout]     |                         ^ help: if this is intentional, prefix it with an underscore: `_k`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `j`
[INFO] [stdout]    --> src/tensor_sketch.rs:172:17
[INFO] [stdout]     |
[INFO] [stdout] 172 |             for j in (0..=k_size - t_size).step_by(t_stride) {
[INFO] [stdout]     |                 ^ help: if this is intentional, prefix it with an underscore: `_j`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `k`
[INFO] [stdout]    --> src/tensor_sketch.rs:176:21
[INFO] [stdout]     |
[INFO] [stdout] 176 |                 for k in 0..self.sketch_dim {
[INFO] [stdout]     |                     ^ help: if this is intentional, prefix it with an underscore: `_k`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `i`
[INFO] [stdout]    --> src/main.rs:287:21
[INFO] [stdout]     |
[INFO] [stdout] 287 |                 for i in 0..replicates {
[INFO] [stdout]     |                     ^ help: if this is intentional, prefix it with an underscore: `_i`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: value assigned to `distance` is never read
[INFO] [stdout]    --> src/main.rs:394:37
[INFO] [stdout]     |
[INFO] [stdout] 394 | ...                   let mut distance = 0.0;
[INFO] [stdout]     |                               ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = help: maybe it is overwritten before being read?
[INFO] [stdout]     = note: `#[warn(unused_assignments)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `seq_index` and `pos_index` are never read
[INFO] [stdout]    --> src/main.rs:318:13
[INFO] [stdout]     |
[INFO] [stdout] 312 |         struct DistanceInfo {
[INFO] [stdout]     |                ------------ fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 318 |             seq_index: usize,
[INFO] [stdout]     |             ^^^^^^^^^
[INFO] [stdout] 319 |             pos_index: usize,
[INFO] [stdout]     |             ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `DistanceInfo` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `metric` should have an upper case name
[INFO] [stdout]    --> src/main.rs:326:15
[INFO] [stdout]     |
[INFO] [stdout] 326 |         const metric: &str = "edit_distance";
[INFO] [stdout]     |               ^^^^^^ help: convert the identifier to upper case: `METRIC`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_upper_case_globals)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/334963c956d25708feab489a3816ae63f639355d/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/rustup-home/toolchains/334963c956d25708feab489a3816ae63f639355d/lib/rustlib/x86_64-unknown-linux-gnu/bin/self-contained:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcbdM3dL/symbols.o" "<10 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libclap-ea26e0ad85739a98.rlib,libclap_builder-2daa436a99d0c187.rlib,libstrsim-d620f0ade87b0f1f.rlib,libanstream-b09f4cf484dc4dbc.rlib,libanstyle_query-d77782f59053574a.rlib,libis_terminal_polyfill-b4fdeb930bc5725e.rlib,libcolorchoice-53282be104416541.rlib,libanstyle_parse-a3655b76ff66ed48.rlib,libutf8parse-e98db3169219ea11.rlib,libclap_lex-628d2097fa6ffef1.rlib,libanstyle-fed7b219c9cacdc4.rlib,librand-7dad88cf10ae908c.rlib,librand_chacha-7fa61921bb689bf4.rlib,libppv_lite86-4250c766b4729968.rlib,librand_core-b804fb2464e10aca.rlib,libgetrandom-4a93357b20600ab6.rlib,liblibc-61b234a80670f80a.rlib,libcfg_if-33ef6c02a07f9fec.rlib,libfaiss-76e7d78a16d8e2f3.rlib,libfaiss_sys-2a49f783bfb570d5.rlib}" "/opt/rustwide/rustup-home/toolchains/334963c956d25708feab489a3816ae63f639355d/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-d6f1d924b2f4233e.rlib,libpanic_unwind-00eb06e39850f679.rlib,libobject-d0382f11baa011b6.rlib,libmemchr-b7e2e2c1a7e4643d.rlib,libaddr2line-30ced7f1999cfa29.rlib,libgimli-3ee7e14c58e31ebd.rlib,librustc_demangle-a4f649bba77ffcc5.rlib,libstd_detect-c89a3ce7ad7c3dbd.rlib,libhashbrown-e1ce1d3d110c6707.rlib,librustc_std_workspace_alloc-e0604fecbf0f39dc.rlib,libminiz_oxide-0a9c6172f04822cc.rlib,libadler2-14a33f7117abcee7.rlib,libunwind-24c16adbe5e57356.rlib,libcfg_if-d2688d4a5c8e415b.rlib,liblibc-8ff7ba6d97853f27.rlib,liballoc-5c001d095eb077ec.rlib,librustc_std_workspace_core-395a38b8e0851c9b.rlib,libcore-d453bab70303062c.rlib,libcompiler_builtins-dd545221bb4f4734.rlib}" "-Wl,-Bdynamic" "-lc" "-lm" "-lrt" "-lpthread" "-lfaiss_c" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-B/opt/rustwide/rustup-home/toolchains/334963c956d25708feab489a3816ae63f639355d/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/334963c956d25708feab489a3816ae63f639355d/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/tss_prefilter-fc4ef4cf13464405" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: rust-lld: error: unable to find library -lfaiss_c
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `tss_prefilter` (bin "tss_prefilter") due to 1 previous error; 10 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "4cfda7ab5ea3743c3b03dcf6467c35ccefe3b2941fd1999ba9f1bcb0e936bac5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4cfda7ab5ea3743c3b03dcf6467c35ccefe3b2941fd1999ba9f1bcb0e936bac5", kill_on_drop: false }`
[INFO] [stdout] 4cfda7ab5ea3743c3b03dcf6467c35ccefe3b2941fd1999ba9f1bcb0e936bac5
