[INFO] cloning repository https://github.com/COMBINE-lab/piscem
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0e8ba08d092be9660d6aee2d5b568f75253473cf
[INFO] building COMBINE-lab/piscem against master#ad211ced81509462cdfe4c29ed10f97279a0acae for pr-135216
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem on toolchain ad211ced81509462cdfe4c29ed10f97279a0acae
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/COMBINE-lab/piscem already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded cmake v0.1.52
[INFO] [stderr]   Downloaded bytecount v0.6.8
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded xz2 v0.1.7
[INFO] [stderr]   Downloaded sha2-asm v0.6.4
[INFO] [stderr]   Downloaded lzma-sys v0.1.20
[INFO] [stderr]   Downloaded prepare_fasta v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3c8802930dccae7114607a31c944d5fbb9eb482b7584c9ae139469db101bf194
[INFO] running `Command { std: "docker" "start" "-a" "3c8802930dccae7114607a31c944d5fbb9eb482b7584c9ae139469db101bf194", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3c8802930dccae7114607a31c944d5fbb9eb482b7584c9ae139469db101bf194", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3c8802930dccae7114607a31c944d5fbb9eb482b7584c9ae139469db101bf194", kill_on_drop: false }`
[INFO] [stdout] 3c8802930dccae7114607a31c944d5fbb9eb482b7584c9ae139469db101bf194
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+ad211ced81509462cdfe4c29ed10f97279a0acae" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] a6701c520c3d079d8431b014c8a118246d462ceef73b8204f553cbb3b934485f
[INFO] running `Command { std: "docker" "start" "-a" "a6701c520c3d079d8431b014c8a118246d462ceef73b8204f553cbb3b934485f", kill_on_drop: false }`
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling pkg-config v0.3.31
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling libc v0.2.166
[INFO] [stderr]    Compiling unicode-ident v1.0.14
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling version_check v0.9.5
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling rustix v0.38.41
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.14
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling serde v1.0.215
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling cc v1.2.1
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling miniz_oxide v0.8.0
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling anyhow v1.0.93
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling clap_lex v0.7.3
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling regex-syntax v0.6.29
[INFO] [stderr]    Compiling serde_json v1.0.133
[INFO] [stderr]    Compiling itoa v1.0.14
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling overload v0.1.1
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling pin-project-lite v0.2.15
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling ryu v1.0.18
[INFO] [stderr]    Compiling cpufeatures v0.2.16
[INFO] [stderr]    Compiling sharded-slab v0.1.7
[INFO] [stderr]    Compiling nu-ansi-term v0.46.0
[INFO] [stderr]    Compiling thread_local v1.1.8
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling syn v2.0.89
[INFO] [stderr]    Compiling terminal_size v0.4.0
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling flate2 v1.0.35
[INFO] [stderr]    Compiling clap_builder v4.5.21
[INFO] [stderr]    Compiling tracing-log v0.2.0
[INFO] [stderr]    Compiling hex v0.4.3
[INFO] [stderr]    Compiling smallvec v1.13.2
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling sha2-asm v0.6.4
[INFO] [stderr]    Compiling piscem v0.11.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling crypto-common v0.1.6
[INFO] [stderr] error: failed to run custom build command for `piscem v0.11.0 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/piscem-8b582afd9e4301ca/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=cuttlefish/CMakeLists.txt
[INFO] [stderr]   cargo:rerun-if-changed=piscem-cpp/CMakeLists.txt
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/piscem-cb0afa7fe6b34799/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/workdir/piscem-cpp" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/piscem-cb0afa7fe6b34799/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Error: The source directory "/opt/rustwide/workdir/piscem-cpp" does not appear to contain CMakeLists.txt.
[INFO] [stderr]   Specify --help for usage, or press the help button on the CMake GUI.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.52/src/lib.rs:1115:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x63b6c7beac3a - std::backtrace_rs::backtrace::libunwind::trace::h65cc9476dea42f04
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/../../backtrace/src/backtrace/libunwind.rs:116:5
[INFO] [stderr]      1:     0x63b6c7beac3a - std::backtrace_rs::backtrace::trace_unsynchronized::h31307b22853da5cb
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x63b6c7beac3a - std::sys::backtrace::_print_fmt::h1d1ec741e9afb97a
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x63b6c7beac3a - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::he389a1126db3ba75
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x63b6c7c0f0c3 - core::fmt::rt::Argument::fmt::h0df11dc86b5adf75
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/core/src/fmt/rt.rs:177:76
[INFO] [stderr]      5:     0x63b6c7c0f0c3 - core::fmt::write::hb735a44de60d4775
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/core/src/fmt/mod.rs:1440:21
[INFO] [stderr]      6:     0x63b6c7be73b3 - std::io::Write::write_fmt::h7e55554e3b601464
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/io/mod.rs:1887:15
[INFO] [stderr]      7:     0x63b6c7beaa82 - std::sys::backtrace::BacktraceLock::print::h1b2403acafb4a9ce
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      8:     0x63b6c7bebd20 - std::panicking::default_hook::{{closure}}::h1331b39f8c22272c
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:295:22
[INFO] [stderr]      9:     0x63b6c7bebb00 - std::panicking::default_hook::h412b1b8b79d13729
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:322:9
[INFO] [stderr]     10:     0x63b6c7bec4c2 - std::panicking::rust_panic_with_hook::he422ff96d7e46154
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:828:13
[INFO] [stderr]     11:     0x63b6c7bec24a - std::panicking::begin_panic_handler::{{closure}}::h48ed6f472c90914b
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:701:13
[INFO] [stderr]     12:     0x63b6c7beb139 - std::sys::backtrace::__rust_end_short_backtrace::hb3ec7f756cf60e78
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/sys/backtrace.rs:168:18
[INFO] [stderr]     13:     0x63b6c7bebedd - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:692:5
[INFO] [stderr]     14:     0x63b6c7c0de90 - core::panicking::panic_fmt::h14762d721bf3d8f4
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/core/src/panicking.rs:75:14
[INFO] [stderr]     15:     0x63b6c7b6611f - cmake::fail::h901e6516ba6c5749
[INFO] [stderr]     16:     0x63b6c7b65962 - cmake::run::h7e3f1a7ab0365a30
[INFO] [stderr]     17:     0x63b6c7b61d1c - cmake::Config::build::h9760c496eef30a46
[INFO] [stderr]     18:     0x63b6c7b5a056 - build_script_build::main::h4ce4c548757c06c7
[INFO] [stderr]     19:     0x63b6c7b576e3 - core::ops::function::FnOnce::call_once::h7388394291bc3e75
[INFO] [stderr]     20:     0x63b6c7b576b6 - std::sys::backtrace::__rust_begin_short_backtrace::h699d2a0d10ffe455
[INFO] [stderr]     21:     0x63b6c7b575f9 - std::rt::lang_start::{{closure}}::hfc0f312dc633dcfd
[INFO] [stderr]     22:     0x63b6c7be34b7 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::he65d3dc22beac451
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/core/src/ops/function.rs:284:13
[INFO] [stderr]     23:     0x63b6c7be34b7 - std::panicking::try::do_call::h06981c1fa5ca7e3e
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:584:40
[INFO] [stderr]     24:     0x63b6c7be34b7 - std::panicking::try::h69dc3282503f57f9
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:547:19
[INFO] [stderr]     25:     0x63b6c7be34b7 - std::panic::catch_unwind::h92970ef9ef5c92ae
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panic.rs:358:14
[INFO] [stderr]     26:     0x63b6c7be34b7 - std::rt::lang_start_internal::{{closure}}::h1b78dd850ae1293d
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/rt.rs:174:48
[INFO] [stderr]     27:     0x63b6c7be34b7 - std::panicking::try::do_call::h027346d9b0cbd7c7
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:584:40
[INFO] [stderr]     28:     0x63b6c7be34b7 - std::panicking::try::h91dc055514206193
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panicking.rs:547:19
[INFO] [stderr]     29:     0x63b6c7be34b7 - std::panic::catch_unwind::ha551d86c182ebce0
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/panic.rs:358:14
[INFO] [stderr]     30:     0x63b6c7be34b7 - std::rt::lang_start_internal::h19b9f2ab21592fb1
[INFO] [stderr]                                  at /rustc/ad211ced81509462cdfe4c29ed10f97279a0acae/library/std/src/rt.rs:174:20
[INFO] [stderr]     31:     0x63b6c7b575d7 - std::rt::lang_start::ha4ed9b7a3f97526f
[INFO] [stderr]     32:     0x63b6c7b5be85 - main
[INFO] [stderr]     33:     0x763c05845d90 - <unknown>
[INFO] [stderr]     34:     0x763c05845e40 - __libc_start_main
[INFO] [stderr]     35:     0x63b6c7b57405 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "a6701c520c3d079d8431b014c8a118246d462ceef73b8204f553cbb3b934485f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a6701c520c3d079d8431b014c8a118246d462ceef73b8204f553cbb3b934485f", kill_on_drop: false }`
[INFO] [stdout] a6701c520c3d079d8431b014c8a118246d462ceef73b8204f553cbb3b934485f
