[INFO] cloning repository https://github.com/sriram98v/seq_class [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/sriram98v/seq_class" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fseq_class", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fseq_class'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 523e39bf814d4acd2f79c345e1224f05e0cf86ba [INFO] checking sriram98v/seq_class against try#a0cd57eba5d417638d3351ba13fc414ad1a24bec for pr-134688-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fsriram98v%2Fseq_class" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/sriram98v/seq_class on toolchain a0cd57eba5d417638d3351ba13fc414ad1a24bec [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a0cd57eba5d417638d3351ba13fc414ad1a24bec" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/sriram98v/seq_class [INFO] finished tweaking git repo https://github.com/sriram98v/seq_class [INFO] tweaked toml for git repo https://github.com/sriram98v/seq_class written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/sriram98v/seq_class already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a0cd57eba5d417638d3351ba13fc414ad1a24bec" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+a0cd57eba5d417638d3351ba13fc414ad1a24bec" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bb07011346b5ce1414b673dea671666c2e3098daeb6f92ba9058da0820a99bcc [INFO] running `Command { std: "docker" "start" "-a" "bb07011346b5ce1414b673dea671666c2e3098daeb6f92ba9058da0820a99bcc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bb07011346b5ce1414b673dea671666c2e3098daeb6f92ba9058da0820a99bcc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb07011346b5ce1414b673dea671666c2e3098daeb6f92ba9058da0820a99bcc", kill_on_drop: false }` [INFO] [stdout] bb07011346b5ce1414b673dea671666c2e3098daeb6f92ba9058da0820a99bcc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+a0cd57eba5d417638d3351ba13fc414ad1a24bec" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8697307158aa87e088d92807ee0680a72cc470bdf65ea22895b6c11635f68c88 [INFO] running `Command { std: "docker" "start" "-a" "8697307158aa87e088d92807ee0680a72cc470bdf65ea22895b6c11635f68c88", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling proc-macro2 v1.0.67 [INFO] [stderr] Compiling libc v0.2.148 [INFO] [stderr] Compiling libm v0.2.7 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking memchr v2.6.3 [INFO] [stderr] Compiling version_check v0.9.4 [INFO] [stderr] Compiling serde v1.0.188 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling paste v1.0.14 [INFO] [stderr] Compiling num-traits v0.2.16 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling matrixmultiply v0.3.7 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Checking bytemuck v1.14.0 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking ryu v1.0.15 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking itoa v1.0.9 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Checking getrandom v0.2.10 [INFO] [stderr] Compiling syn v2.0.37 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking wide v0.7.11 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking aho-corasick v1.0.5 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking num-complex v0.4.4 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking regex-syntax v0.7.5 [INFO] [stderr] Compiling thiserror v1.0.48 [INFO] [stderr] Checking unicode-width v0.1.10 [INFO] [stderr] Compiling backtrace v0.3.69 [INFO] [stderr] Checking anstyle-parse v0.2.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking either v1.9.0 [INFO] [stderr] Compiling anyhow 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v0.1.7 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking bytecount v0.6.3 [INFO] [stderr] Checking encode_unicode v0.3.6 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking indicatif v0.17.6 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking glob v0.3.1 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking clap v4.4.3 [INFO] [stderr] Checking csv v1.2.2 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking prettytable-rs v0.8.0 [INFO] [stderr] Checking shrust v0.0.7 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.4.0 [INFO] [stderr] Checking generalized_suffix_tree v0.1.0 (https://github.com/sriram98v/generalized_suffix_tree#46349b91) [INFO] [stderr] Checking seq_class v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition name: `has_error_description_deprecated` [INFO] [stdout] --> src/main.rs:14:1 [INFO] [stdout] | [INFO] [stdout] 14 | / error_chain! { [INFO] [stdout] 15 | | foreign_links { [INFO] [stdout] 16 | | Glob(glob::GlobError); [INFO] [stdout] 17 | | Pattern(glob::PatternError); [INFO] [stdout] 18 | | } [INFO] [stdout] 19 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows` [INFO] [stdout] = note: using a cfg inside a macro will use the cfgs from the destination crate and not the ones from the defining crate [INFO] [stdout] = help: try referring to `impl_error_chain_processed` crate for guidance on how handle this unexpected cfg [INFO] [stdout] = help: the macro `impl_error_chain_processed` may come from an old version of the `error_chain` crate, try updating your dependency with `cargo update -p error_chain` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] = note: this warning originates in the macro `impl_error_chain_processed` which comes from the expansion of the macro `error_chain` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition name: `has_error_description_deprecated` [INFO] [stdout] --> src/main.rs:14:1 [INFO] [stdout] | [INFO] [stdout] 14 | / error_chain! { [INFO] [stdout] 15 | | foreign_links { [INFO] [stdout] 16 | | Glob(glob::GlobError); [INFO] [stdout] 17 | | Pattern(glob::PatternError); [INFO] [stdout] 18 | | } [INFO] [stdout] 19 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `fmt_debug`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows` [INFO] [stdout] = note: using a cfg inside a macro will use the cfgs from the destination crate and not the ones from the defining crate [INFO] [stdout] = help: try referring to `impl_error_chain_processed` crate for guidance on how handle this unexpected cfg [INFO] [stdout] = help: the macro `impl_error_chain_processed` may come from an old version of the `error_chain` crate, try updating your dependency with `cargo update -p error_chain` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] = note: this warning originates in the macro `impl_error_chain_processed` which comes from the expansion of the macro `error_chain` (in Nightly builds, run with -Z macro-backtrace for more info) [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `read_id` [INFO] [stdout] --> src/main.rs:143:13 [INFO] [stdout] | [INFO] [stdout] 143 | let read_id: String = read_data.id().to_string(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_read_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `hit` [INFO] [stdout] --> src/main.rs:158:13 [INFO] [stdout] | [INFO] [stdout] 158 | for hit in hits.iter(){ [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_hit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let mut matches: HashSet<(String, String, usize, usize, String)> = HashSet::new(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `hamming_distance` is never used [INFO] [stdout] --> src/main.rs:59:4 [INFO] [stdout] | [INFO] [stdout] 59 | fn hamming_distance(ref_seq: &[char], read_seq: &[char])->(usize, String){ [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&usize` instead of cloning the inner type [INFO] [stdout] --> src/main.rs:87:110 [INFO] [stdout] | [INFO] [stdout] 87 | ... .filter(|start_pos| start_pos>=&&depth||start_pos.clone()+q_seq.len() src/main.rs:143:13 [INFO] [stdout] | [INFO] [stdout] 143 | let read_id: String = read_data.id().to_string(); [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_read_id` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `hit` [INFO] [stdout] --> src/main.rs:158:13 [INFO] [stdout] | [INFO] [stdout] 158 | for hit in hits.iter(){ [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_hit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let mut matches: HashSet<(String, String, usize, usize, String)> = HashSet::new(); [INFO] [stdout] | ----^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `hamming_distance` is never used [INFO] [stdout] --> src/main.rs:59:4 [INFO] [stdout] | [INFO] [stdout] 59 | fn hamming_distance(ref_seq: &[char], read_seq: &[char])->(usize, String){ [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: using `.clone()` on a double reference, which returns `&usize` instead of cloning the inner type [INFO] [stdout] --> src/main.rs:87:110 [INFO] [stdout] | [INFO] [stdout] 87 | ... .filter(|start_pos| start_pos>=&&depth||start_pos.clone()+q_seq.len()