[INFO] cloning repository https://github.com/tolkit/vcf2msa
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tolkit/vcf2msa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fvcf2msa", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fvcf2msa'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 809cb881b4b4e942de5fb7765cd6b7da8e05505d
[INFO] testing tolkit/vcf2msa against master#9e136a30a965bf4e63f03095c57df7257bf96fd6 for pr-134530
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fvcf2msa" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/tolkit/vcf2msa on toolchain 9e136a30a965bf4e63f03095c57df7257bf96fd6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9e136a30a965bf4e63f03095c57df7257bf96fd6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/tolkit/vcf2msa
[INFO] finished tweaking git repo https://github.com/tolkit/vcf2msa
[INFO] tweaked toml for git repo https://github.com/tolkit/vcf2msa written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/tolkit/vcf2msa already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9e136a30a965bf4e63f03095c57df7257bf96fd6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded getset v0.1.1
[INFO] [stderr]   Downloaded bio-types v0.12.0
[INFO] [stderr]   Downloaded bio v0.37.1
[INFO] [stderr]   Downloaded ndarray v0.15.3
[INFO] [stderr]   Downloaded rust-htslib v0.37.0
[INFO] [stderr]   Downloaded hts-sys v1.11.1-fix2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+9e136a30a965bf4e63f03095c57df7257bf96fd6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7b0ed2ba38c2b9a76ecf79234bac08687faa821947a77be7d89ebb0f76c654e9
[INFO] running `Command { std: "docker" "start" "-a" "7b0ed2ba38c2b9a76ecf79234bac08687faa821947a77be7d89ebb0f76c654e9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7b0ed2ba38c2b9a76ecf79234bac08687faa821947a77be7d89ebb0f76c654e9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7b0ed2ba38c2b9a76ecf79234bac08687faa821947a77be7d89ebb0f76c654e9", kill_on_drop: false }`
[INFO] [stdout] 7b0ed2ba38c2b9a76ecf79234bac08687faa821947a77be7d89ebb0f76c654e9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:f3a9d4ad9d972b27faf3965f35b62e55ba32bbce8f20bc8fe909558a86702fde" "/opt/rustwide/cargo-home/bin/cargo" "+9e136a30a965bf4e63f03095c57df7257bf96fd6" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4ee7d3c376942ff2ded616a844ae74365827d097e3d58453d00b8a7342e892c2
[INFO] running `Command { std: "docker" "start" "-a" "4ee7d3c376942ff2ded616a844ae74365827d097e3d58453d00b8a7342e892c2", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.29
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling syn v1.0.77
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling libc v0.2.103
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling memchr v2.4.1
[INFO] [stderr]    Compiling serde_derive v1.0.130
[INFO] [stderr]    Compiling serde v1.0.130
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling pkg-config v0.3.20
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling jobserver v0.1.24
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling cc v1.0.70
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling typenum v1.14.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling tinyvec v1.5.0
[INFO] [stderr]    Compiling approx v0.5.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling matrixmultiply v0.3.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling matches v0.1.9
[INFO] [stderr]    Compiling paste v1.0.5
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix2
[INFO] [stderr]    Compiling simba v0.5.1
[INFO] [stderr]    Compiling unicode-normalization v0.1.19
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rand_distr v0.4.2
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling regex-automata v0.1.10
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling unicode-bidi v0.3.6
[INFO] [stderr]    Compiling hashbrown v0.11.2
[INFO] [stderr]    Compiling anyhow v1.0.44
[INFO] [stderr]    Compiling idna v0.2.3
[INFO] [stderr]    Compiling form_urlencoded v1.0.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling itoa v0.4.8
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bio v0.37.1
[INFO] [stderr]    Compiling unicode-width v0.1.9
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling url v2.2.2
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling strum v0.21.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.29
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.1
[INFO] [stderr]    Compiling nalgebra v0.27.1
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling strum_macros v0.21.1
[INFO] [stderr]    Compiling thiserror v1.0.29
[INFO] [stderr]    Compiling bio-types v0.12.0
[INFO] [stderr]    Compiling rust-htslib v0.37.0
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: LC_ALL="C" PATH="/opt/rustwide/rustup-home/toolchains/9e136a30a965bf4e63f03095c57df7257bf96fd6/lib/rustlib/x86_64-unknown-linux-gnu/bin:/opt/rustwide/rustup-home/toolchains/9e136a30a965bf4e63f03095c57df7257bf96fd6/lib/rustlib/x86_64-unknown-linux-gnu/bin/self-contained:/opt/rustwide/cargo-home/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" VSLANG="1033" "cc" "-Wl,--version-script=/tmp/rustc8NPtVz/list" "-Wl,--no-undefined-version" "-m64" "/tmp/rustc8NPtVz/symbols.o" "<16 object files omitted>" "/opt/rustwide/target/debug/deps/serde_derive-1ec7393ee37dc617.95hpheehyad844gygiksz503c.rcgu.rmeta" "<1 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libsyn-e46183ba0c18550f.rlib,libquote-9413e8647dcb430a.rlib,libproc_macro2-300115b108c8525c.rlib,libunicode_xid-9a308e948d49b175.rlib}" "/opt/rustwide/rustup-home/toolchains/9e136a30a965bf4e63f03095c57df7257bf96fd6/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libproc_macro-01ad5ef45cde2ef2.rlib,libstd-c961c021679cb080.rlib,libpanic_unwind-cf53e161ed1cff61.rlib,libobject-cb648d8066e1f446.rlib,libmemchr-c5d4f358058ea4b7.rlib,libaddr2line-c3d71356250e6616.rlib,libgimli-f87b04c9c9484f11.rlib,librustc_demangle-bcb6f2ec634b4b7c.rlib,libstd_detect-7c9c37927c8e6d84.rlib,libhashbrown-c2c9b281c2c2a277.rlib,librustc_std_workspace_alloc-436fb8ec294074ae.rlib,libminiz_oxide-8d1606a7c3a02301.rlib,libadler-b9d368accc529045.rlib,libunwind-8fa2d9148abc4bd4.rlib,libcfg_if-04c8eb04b1ca0e2e.rlib,liblibc-ac32c271036f683f.rlib,liballoc-954db56effadca87.rlib,librustc_std_workspace_core-395a38b8e0851c9b.rlib,libcore-d453bab70303062c.rlib,libcompiler_builtins-d643a4794e0b0ebc.rlib}" "-Wl,-Bdynamic" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-B/opt/rustwide/rustup-home/toolchains/9e136a30a965bf4e63f03095c57df7257bf96fd6/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/9e136a30a965bf4e63f03095c57df7257bf96fd6/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libserde_derive-1ec7393ee37dc617.so" "-Wl,--gc-sections" "-shared" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: PLEASE submit a bug report to https://github.com/llvm/llvm-project/issues/ and include the crash backtrace.
[INFO] [stdout]           collect2: fatal error: ld terminated with signal 7 [Bus error], core dumped
[INFO] [stdout]           compilation terminated.
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `serde_derive` (lib) due to 1 previous error
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "4ee7d3c376942ff2ded616a844ae74365827d097e3d58453d00b8a7342e892c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4ee7d3c376942ff2ded616a844ae74365827d097e3d58453d00b8a7342e892c2", kill_on_drop: false }`
[INFO] [stdout] 4ee7d3c376942ff2ded616a844ae74365827d097e3d58453d00b8a7342e892c2