[INFO] cloning repository https://github.com/keithyin/mm2 [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/mm2" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] f419997b6b1e967e0de1f345021f3fdf0fc05fcd [INFO] checking keithyin/mm2 against try#da0275e101cdc809ce291ed8b64d6f82c6b65467 for pr-134276 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] error: unable to write file test_data/GCF_000005845.2_ASM584v2_genomic.fna [INFO] [stderr] error: unable to write file test_data/ch11-6000.fa [INFO] [stderr] error: unable to write file test_data/ecoli_query.fa [INFO] [stderr] error: unable to write file test_data/query_of_ch11.fa [INFO] [stderr] error: unable to write file test_data/seq.fasta [INFO] [stderr] fatal: unable to checkout working tree [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] [INFO] checking keithyin/mm2 against try#da0275e101cdc809ce291ed8b64d6f82c6b65467 for pr-134276 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] error: unable to write file test_data/ch11-6000.fa [INFO] [stderr] error: unable to write file test_data/ecoli_query.fa [INFO] [stderr] error: unable to write file test_data/query_of_ch11.fa [INFO] [stderr] error: unable to write file test_data/seq.fasta [INFO] [stderr] fatal: unable to checkout working tree [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] [INFO] checking keithyin/mm2 against try#da0275e101cdc809ce291ed8b64d6f82c6b65467 for pr-134276 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/keithyin/mm2 on toolchain da0275e101cdc809ce291ed8b64d6f82c6b65467 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da0275e101cdc809ce291ed8b64d6f82c6b65467" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/keithyin/mm2 [INFO] finished tweaking git repo https://github.com/keithyin/mm2 [INFO] tweaked toml for git repo https://github.com/keithyin/mm2 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/keithyin/mm2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da0275e101cdc809ce291ed8b64d6f82c6b65467" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] error: failed to download `needletail v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] unable to get packages from source [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack package `needletail v0.6.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack entry at `needletail-0.6.0/tests/data/28S.fasta` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `/workspace/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/needletail-0.6.0/tests/data/28S.fasta` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `needletail-0.6.0/tests/data/28S.fasta` into `/workspace/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/needletail-0.6.0/tests/data/28S.fasta` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) [INFO] checking keithyin/mm2 against try#da0275e101cdc809ce291ed8b64d6f82c6b65467 for pr-134276 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] [stderr] fatal: sha1 file '/workspace/builds/worker-1-tc2/source/.git/index.lock' write error. Out of diskspace [INFO] [stderr] warning: Clone succeeded, but checkout failed. [INFO] [stderr] You can inspect what was checked out with 'git status' [INFO] [stderr] and retry with 'git restore --source=HEAD :/' [INFO] [stderr] [INFO] checking keithyin/mm2 against try#da0275e101cdc809ce291ed8b64d6f82c6b65467 for pr-134276 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fmm2" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/keithyin/mm2 on toolchain da0275e101cdc809ce291ed8b64d6f82c6b65467 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da0275e101cdc809ce291ed8b64d6f82c6b65467" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/keithyin/mm2 [INFO] finished tweaking git repo https://github.com/keithyin/mm2 [INFO] tweaked toml for git repo https://github.com/keithyin/mm2 written to /workspace/builds/worker-1-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/keithyin/mm2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+da0275e101cdc809ce291ed8b64d6f82c6b65467" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] error: failed to unpack package `hts-sys v2.2.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack entry at `hts-sys-2.2.0/htslib/test/ce#large_seq.sam` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `/workspace/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/hts-sys-2.2.0/htslib/test/ce#large_seq.sam` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] failed to unpack `hts-sys-2.2.0/htslib/test/ce#large_seq.sam` into `/workspace/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/hts-sys-2.2.0/htslib/test/ce#large_seq.sam` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] No space left on device (os error 28) ExecutionFailed(ExitStatus(unix_wait_status(25856)))